10 20 30 40 50 60 70 80 2YS4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-APR-07 2YS4
TITLE SOLUTION STRUCTURE OF THE N-TERMINAL PAPD-LIKE DOMAIN OF TITLE 2 HYDIN PROTEIN FROM HUMAN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROCEPHALUS-INDUCING PROTEIN HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PAPD-LIKE, UNP RESIDUES 182-296; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HYDIN; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060327-16; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HYDIN, PAPD-LIKE, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, KEYWDS 4 UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,T.TOMIZAWA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2YS4 1 VERSN REVDAT 1 08-APR-08 2YS4 0
JRNL AUTH H.LI,T.TOMIZAWA,S.KOSHIBA,S.WATANABE,T.HARADA, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL PAPD-LIKE JRNL TITL 2 DOMAIN OF HYDIN PROTEIN FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YS4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027064.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.19MM SAMPLE U-15N,13C PAPD- REMARK 210 LIKE DOMAIN; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 35 175.22 -51.98 REMARK 500 1 THR A 36 106.17 -52.80 REMARK 500 1 PRO A 66 0.04 -69.74 REMARK 500 1 PRO A 90 90.22 -69.75 REMARK 500 1 MET A 121 -28.13 -37.47 REMARK 500 2 SER A 35 176.17 -52.05 REMARK 500 2 THR A 36 107.38 -52.07 REMARK 500 2 PRO A 90 86.37 -69.76 REMARK 500 2 ALA A 117 107.14 -52.00 REMARK 500 3 SER A 35 178.43 -52.53 REMARK 500 3 PRO A 66 0.30 -69.77 REMARK 500 3 ALA A 117 102.12 -51.86 REMARK 500 4 SER A 35 178.63 -52.04 REMARK 500 4 THR A 36 106.38 -52.05 REMARK 500 4 PRO A 66 3.55 -69.77 REMARK 500 4 PRO A 90 86.91 -69.79 REMARK 500 4 ALA A 117 105.43 -52.08 REMARK 500 5 SER A 35 170.28 -52.02 REMARK 500 5 TYR A 41 172.93 -51.99 REMARK 500 5 ALA A 117 104.24 -51.98 REMARK 500 6 SER A 35 174.64 -52.12 REMARK 500 6 THR A 36 106.05 -52.04 REMARK 500 6 ASN A 54 -65.44 -97.91 REMARK 500 6 LYS A 55 -68.82 -97.83 REMARK 500 6 PRO A 90 -174.93 -69.79 REMARK 500 6 ALA A 117 106.88 -52.03 REMARK 500 7 SER A 35 178.13 -51.98 REMARK 500 7 THR A 36 107.47 -52.00 REMARK 500 7 PRO A 66 0.54 -69.79 REMARK 500 7 PRO A 90 86.92 -69.80 REMARK 500 7 ALA A 117 109.27 -52.00 REMARK 500 8 PRO A 16 -179.89 -69.79 REMARK 500 8 SER A 35 173.80 -52.82 REMARK 500 8 ALA A 117 104.09 -52.12 REMARK 500 8 ASP A 120 109.40 -55.05 REMARK 500 9 SER A 35 177.21 -51.99 REMARK 500 9 ALA A 117 102.03 -51.99 REMARK 500 10 PRO A 16 -174.85 -69.69 REMARK 500 10 SER A 35 178.75 -52.04 REMARK 500 11 SER A 35 177.37 -51.67 REMARK 500 11 THR A 36 108.46 -53.89 REMARK 500 11 ALA A 117 102.00 -51.97 REMARK 500 12 SER A 35 172.18 -51.99 REMARK 500 12 THR A 36 104.71 -52.08 REMARK 500 12 PRO A 90 -174.55 -69.73 REMARK 500 12 ALA A 117 102.04 -52.22 REMARK 500 13 ARG A 10 109.72 -58.81 REMARK 500 13 SER A 35 178.50 -52.68 REMARK 500 13 PRO A 66 0.77 -69.84 REMARK 500 13 ALA A 117 102.42 -52.60 REMARK 500 14 SER A 35 173.73 -52.26 REMARK 500 14 ALA A 117 106.99 -52.03 REMARK 500 15 GLU A 11 175.23 -52.10 REMARK 500 15 SER A 35 175.24 -52.02 REMARK 500 15 ALA A 117 104.35 -52.00 REMARK 500 16 SER A 35 176.33 -51.97 REMARK 500 16 PRO A 66 1.21 -69.67 REMARK 500 16 ALA A 117 102.21 -52.09 REMARK 500 17 SER A 35 178.68 -51.19 REMARK 500 17 ALA A 117 102.01 -52.02 REMARK 500 18 SER A 35 -70.37 -32.64 REMARK 500 18 ASN A 56 109.80 -52.09 REMARK 500 18 PRO A 90 79.56 -69.75 REMARK 500 18 ALA A 117 103.80 -51.97 REMARK 500 19 PRO A 16 -169.89 -69.80 REMARK 500 19 SER A 35 173.86 -51.93 REMARK 500 19 ALA A 117 102.05 -51.94 REMARK 500 19 ASP A 120 -17.00 -49.81 REMARK 500 20 SER A 35 173.77 -52.16 REMARK 500 20 PRO A 90 77.37 -69.75 REMARK 500 20 ALA A 117 106.95 -51.98 REMARK 500 20 MET A 121 -25.75 -39.37 REMARK 500 REMARK 500 REMARK: NULL
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002011753.1 RELATED DB: TARGETDB
DBREF 2YS4 A 8 122 UNP Q4G0P3 HYDIN_HUMAN 182 296
SEQADV 2YS4 GLY A 1 UNP Q4G0P3 EXPRESSION TAG SEQADV 2YS4 SER A 2 UNP Q4G0P3 EXPRESSION TAG SEQADV 2YS4 SER A 3 UNP Q4G0P3 EXPRESSION TAG SEQADV 2YS4 GLY A 4 UNP Q4G0P3 EXPRESSION TAG SEQADV 2YS4 SER A 5 UNP Q4G0P3 EXPRESSION TAG SEQADV 2YS4 SER A 6 UNP Q4G0P3 EXPRESSION TAG SEQADV 2YS4 GLY A 7 UNP Q4G0P3 EXPRESSION TAG
SEQRES 1 A 122 GLY SER SER GLY SER SER GLY THR GLU ARG GLU LYS PHE SEQRES 2 A 122 ILE VAL PRO ILE LYS ALA ARG GLY ALA ARG ALA ILE LEU SEQRES 3 A 122 ASP PHE PRO ASP LYS LEU ASN PHE SER THR CYS PRO VAL SEQRES 4 A 122 LYS TYR SER THR GLN LYS ILE LEU LEU VAL ARG ASN ILE SEQRES 5 A 122 GLY ASN LYS ASN ALA VAL PHE HIS ILE LYS THR CYS ARG SEQRES 6 A 122 PRO PHE SER ILE GLU PRO ALA ILE GLY THR LEU ASN VAL SEQRES 7 A 122 GLY GLU SER MET GLN LEU GLU VAL GLU PHE GLU PRO GLN SEQRES 8 A 122 SER VAL GLY ASP HIS SER GLY ARG LEU ILE VAL CYS TYR SEQRES 9 A 122 ASP THR GLY GLU LYS VAL PHE VAL SER LEU TYR GLY ALA SEQRES 10 A 122 ALA ILE ASP MET ASN
SHEET 1 A 2 LYS A 31 ASN A 33 0 SHEET 2 A 2 SER A 113 TYR A 115 1 O SER A 113 N LEU A 32 SHEET 1 B 2 CYS A 37 PRO A 38 0 SHEET 2 B 2 ALA A 118 ILE A 119 1 O ILE A 119 N CYS A 37 SHEET 1 C 3 THR A 43 ARG A 50 0 SHEET 2 C 3 SER A 81 PHE A 88 -1 O PHE A 88 N THR A 43 SHEET 3 C 3 PHE A 67 GLU A 70 -1 N SER A 68 O GLU A 87 SHEET 1 D 4 ILE A 73 LEU A 76 0 SHEET 2 D 4 ALA A 57 LYS A 62 -1 N ALA A 57 O LEU A 76 SHEET 3 D 4 SER A 97 TYR A 104 -1 O CYS A 103 N HIS A 60 SHEET 4 D 4 LYS A 109 TYR A 115 -1 O VAL A 110 N VAL A 102
CISPEP 1 ARG A 65 PRO A 66 1 0.00 CISPEP 2 GLU A 70 PRO A 71 1 -0.01 CISPEP 3 ARG A 65 PRO A 66 2 -0.01 CISPEP 4 GLU A 70 PRO A 71 2 0.03 CISPEP 5 ARG A 65 PRO A 66 3 -0.01 CISPEP 6 GLU A 70 PRO A 71 3 0.04 CISPEP 7 ARG A 65 PRO A 66 4 -0.01 CISPEP 8 GLU A 70 PRO A 71 4 0.03 CISPEP 9 ARG A 65 PRO A 66 5 -0.02 CISPEP 10 GLU A 70 PRO A 71 5 0.03 CISPEP 11 ARG A 65 PRO A 66 6 0.04 CISPEP 12 GLU A 70 PRO A 71 6 0.05 CISPEP 13 ARG A 65 PRO A 66 7 -0.02 CISPEP 14 GLU A 70 PRO A 71 7 0.03 CISPEP 15 ARG A 65 PRO A 66 8 0.05 CISPEP 16 GLU A 70 PRO A 71 8 0.03 CISPEP 17 ARG A 65 PRO A 66 9 -0.02 CISPEP 18 GLU A 70 PRO A 71 9 0.02 CISPEP 19 ARG A 65 PRO A 66 10 -0.02 CISPEP 20 GLU A 70 PRO A 71 10 0.05 CISPEP 21 ARG A 65 PRO A 66 11 0.03 CISPEP 22 GLU A 70 PRO A 71 11 0.00 CISPEP 23 ARG A 65 PRO A 66 12 -0.01 CISPEP 24 GLU A 70 PRO A 71 12 -0.02 CISPEP 25 ARG A 65 PRO A 66 13 0.07 CISPEP 26 GLU A 70 PRO A 71 13 -0.04 CISPEP 27 ARG A 65 PRO A 66 14 -0.04 CISPEP 28 GLU A 70 PRO A 71 14 0.00 CISPEP 29 ARG A 65 PRO A 66 15 -0.03 CISPEP 30 GLU A 70 PRO A 71 15 0.04 CISPEP 31 ARG A 65 PRO A 66 16 -0.08 CISPEP 32 GLU A 70 PRO A 71 16 0.06 CISPEP 33 ARG A 65 PRO A 66 17 0.05 CISPEP 34 GLU A 70 PRO A 71 17 0.05 CISPEP 35 ARG A 65 PRO A 66 18 0.02 CISPEP 36 GLU A 70 PRO A 71 18 0.06 CISPEP 37 ARG A 65 PRO A 66 19 0.07 CISPEP 38 GLU A 70 PRO A 71 19 0.03 CISPEP 39 ARG A 65 PRO A 66 20 -0.01 CISPEP 40 GLU A 70 PRO A 71 20 -0.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000