10 20 30 40 50 60 70 80 2YS3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 03-APR-07 2YS3
TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF KINDLIN-3 FROM HUMAN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNC-112-RELATED PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN, UNP RESIDUES 349-478; COMPND 5 SYNONYM: KINDLIN-3, MIG2-LIKE; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: URP2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060904-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PH DOMAIN, UNC-112-RELATED PROTEIN 2, KINDLIN-3, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2YS3 1 VERSN REVDAT 1 09-OCT-07 2YS3 0
JRNL AUTH H.LI,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF KINDLIN-3 JRNL TITL 2 FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YS3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027063.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18MM PH DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 13 139.80 -172.61 REMARK 500 1 ARG A 21 36.86 -96.95 REMARK 500 1 GLN A 46 -34.35 -34.27 REMARK 500 1 GLN A 55 111.18 -165.30 REMARK 500 1 LYS A 60 92.32 -51.04 REMARK 500 1 CYS A 62 174.98 -59.67 REMARK 500 1 SER A 71 -38.34 -38.29 REMARK 500 1 GLN A 73 45.12 38.25 REMARK 500 1 ARG A 114 174.31 -56.86 REMARK 500 1 ARG A 136 162.11 -42.38 REMARK 500 2 PRO A 9 96.51 -69.76 REMARK 500 2 ASP A 13 139.86 -174.71 REMARK 500 2 LEU A 23 74.00 -67.67 REMARK 500 2 GLU A 37 -71.02 -33.13 REMARK 500 2 LEU A 59 -33.14 -36.40 REMARK 500 2 CYS A 62 -176.75 -67.48 REMARK 500 2 MET A 104 -70.64 -46.08 REMARK 500 2 ARG A 114 155.40 -48.59 REMARK 500 3 LYS A 26 136.60 -37.17 REMARK 500 3 GLU A 37 -71.68 -32.13 REMARK 500 3 GLN A 46 -33.25 -34.09 REMARK 500 3 MET A 87 164.28 -41.94 REMARK 500 3 ARG A 136 -175.38 -51.70 REMARK 500 4 ASP A 13 138.88 -171.94 REMARK 500 4 ARG A 21 46.30 -85.29 REMARK 500 4 LEU A 25 109.82 -40.80 REMARK 500 4 GLU A 37 -72.86 -32.49 REMARK 500 4 GLN A 55 105.01 -173.87 REMARK 500 4 LYS A 60 105.55 -56.51 REMARK 500 4 VAL A 70 -38.28 -36.06 REMARK 500 4 GLN A 73 54.55 36.90 REMARK 500 4 MET A 87 129.17 -172.44 REMARK 500 4 ARG A 114 153.35 -40.43 REMARK 500 5 ASP A 13 142.73 -174.00 REMARK 500 5 PRO A 20 -170.07 -69.73 REMARK 500 5 LYS A 26 121.29 -37.61 REMARK 500 5 GLU A 37 -70.67 -31.57 REMARK 500 5 LYS A 60 90.01 -68.06 REMARK 500 5 CYS A 62 -175.52 -51.97 REMARK 500 5 GLN A 73 39.85 39.36 REMARK 500 5 ARG A 136 -176.15 -55.70 REMARK 500 6 SER A 3 173.92 -54.08 REMARK 500 6 ASP A 13 141.47 -174.38 REMARK 500 6 TYR A 28 51.51 36.50 REMARK 500 6 GLU A 37 -71.52 -31.11 REMARK 500 6 LEU A 59 -36.42 -34.69 REMARK 500 6 CYS A 62 178.20 -57.83 REMARK 500 6 ASP A 67 35.82 -95.57 REMARK 500 6 GLN A 73 51.37 36.71 REMARK 500 6 ARG A 114 162.62 -45.33 REMARK 500 7 ILE A 8 103.23 -40.64 REMARK 500 7 ASP A 13 141.53 -172.48 REMARK 500 7 LYS A 26 98.96 -69.33 REMARK 500 7 GLU A 37 -70.06 -32.99 REMARK 500 7 ALA A 49 151.54 -45.41 REMARK 500 7 GLN A 55 113.21 -165.60 REMARK 500 7 CYS A 62 171.73 -47.48 REMARK 500 7 VAL A 70 -30.42 -37.43 REMARK 500 7 GLN A 73 46.41 35.04 REMARK 500 7 ALA A 105 -38.13 -39.87 REMARK 500 7 TYR A 121 -74.27 -53.30 REMARK 500 8 PRO A 9 96.76 -69.73 REMARK 500 8 ASP A 13 142.03 -175.11 REMARK 500 8 PRO A 20 1.63 -69.75 REMARK 500 8 CYS A 62 -176.56 -67.82 REMARK 500 8 ASN A 69 79.33 -117.45 REMARK 500 9 SER A 5 109.29 -169.51 REMARK 500 9 ILE A 8 103.28 -38.42 REMARK 500 9 ASP A 13 142.64 -173.74 REMARK 500 9 GLU A 37 -75.08 -32.18 REMARK 500 9 GLN A 55 105.64 -163.76 REMARK 500 9 ASP A 67 35.40 -97.87 REMARK 500 9 GLN A 73 38.92 35.06 REMARK 500 9 MET A 104 -70.14 -36.93 REMARK 500 9 ALA A 105 -33.61 -38.42 REMARK 500 10 SER A 5 108.38 -169.87 REMARK 500 10 SER A 6 40.57 74.78 REMARK 500 10 ASP A 13 138.22 -172.67 REMARK 500 10 LYS A 22 116.18 -174.20 REMARK 500 10 GLU A 37 -71.38 -29.32 REMARK 500 10 LYS A 60 95.01 -57.89 REMARK 500 10 VAL A 70 -38.34 -37.56 REMARK 500 10 GLN A 73 39.36 34.87 REMARK 500 10 ARG A 114 150.60 -44.90 REMARK 500 10 ALA A 117 -36.56 -36.30 REMARK 500 10 TYR A 121 -70.09 -38.30 REMARK 500 11 ILE A 8 105.52 -39.68 REMARK 500 11 ASP A 13 142.65 -173.28 REMARK 500 11 PRO A 20 2.50 -69.71 REMARK 500 11 LEU A 23 -176.20 -55.42 REMARK 500 11 THR A 24 32.69 35.81 REMARK 500 11 LEU A 25 101.77 -41.14 REMARK 500 11 LYS A 26 -62.87 -97.88 REMARK 500 11 GLN A 30 87.09 -59.10 REMARK 500 11 GLU A 37 -73.00 -33.16 REMARK 500 11 ALA A 49 152.81 -48.28 REMARK 500 11 GLN A 55 107.35 -161.98 REMARK 500 11 LYS A 60 97.70 -66.86 REMARK 500 11 GLN A 73 48.03 36.60 REMARK 500 11 MET A 104 -71.51 -37.57 REMARK 500 11 ALA A 117 -27.15 -37.88 REMARK 500 11 ARG A 136 157.90 -39.32 REMARK 500 12 SER A 5 86.30 -55.00 REMARK 500 12 ASP A 13 142.44 -175.05 REMARK 500 12 LEU A 23 98.41 -60.79 REMARK 500 12 THR A 24 -56.87 -125.63 REMARK 500 12 TYR A 28 148.70 -37.17 REMARK 500 12 GLU A 37 -72.64 -33.21 REMARK 500 12 GLN A 55 114.46 -174.97 REMARK 500 12 LYS A 60 107.56 -57.45 REMARK 500 12 ALA A 105 -35.05 -38.90 REMARK 500 13 ASP A 13 147.29 -171.07 REMARK 500 13 PRO A 20 2.82 -69.78 REMARK 500 13 LYS A 26 -51.67 -130.43 REMARK 500 13 GLN A 30 97.93 -66.40 REMARK 500 13 GLN A 55 139.72 -175.00 REMARK 500 13 LYS A 60 99.19 -65.28 REMARK 500 13 CYS A 62 177.13 -52.96 REMARK 500 14 ILE A 8 103.43 -42.08 REMARK 500 14 ASP A 13 148.04 -174.80 REMARK 500 14 PRO A 20 3.22 -69.80 REMARK 500 14 ARG A 21 80.83 -57.72 REMARK 500 14 GLU A 37 -74.57 -32.44 REMARK 500 14 GLN A 73 52.40 34.84 REMARK 500 14 ARG A 114 160.48 -49.48 REMARK 500 14 SER A 119 31.74 38.43 REMARK 500 14 SER A 120 -33.75 -134.02 REMARK 500 15 ILE A 8 102.86 -36.37 REMARK 500 15 ASP A 13 144.26 -175.01 REMARK 500 15 ARG A 21 169.16 -44.54 REMARK 500 15 GLU A 37 -75.29 -32.80 REMARK 500 15 GLN A 46 -19.52 -48.04 REMARK 500 15 GLN A 55 108.89 -160.24 REMARK 500 15 LYS A 60 99.60 -61.18 REMARK 500 15 ASN A 69 73.38 -119.11 REMARK 500 15 GLN A 73 47.75 36.82 REMARK 500 15 ALA A 105 -33.74 -38.09 REMARK 500 15 TYR A 121 -72.43 -58.92 REMARK 500 15 ARG A 136 -175.79 -54.94 REMARK 500 16 ILE A 8 103.11 -42.95 REMARK 500 16 ASP A 13 145.77 -173.58 REMARK 500 16 PRO A 20 -170.48 -69.75 REMARK 500 16 ARG A 21 -176.58 -175.23 REMARK 500 16 LYS A 22 159.89 -42.55 REMARK 500 16 LEU A 23 94.95 -37.21 REMARK 500 16 TYR A 28 -179.22 -53.56 REMARK 500 16 GLU A 37 -71.32 -31.39 REMARK 500 16 GLN A 55 136.94 -175.31 REMARK 500 16 ASN A 58 93.95 -62.29 REMARK 500 16 LEU A 59 -19.17 -48.94 REMARK 500 16 LYS A 60 82.69 -61.84 REMARK 500 16 GLN A 73 45.00 36.58 REMARK 500 16 PRO A 84 0.11 -69.79 REMARK 500 16 MET A 87 136.88 -34.52 REMARK 500 16 ALA A 105 -38.53 -39.14 REMARK 500 16 ARG A 136 -176.01 -52.11 REMARK 500 17 PRO A 9 95.78 -69.74 REMARK 500 17 PRO A 20 -165.35 -69.71 REMARK 500 17 LEU A 25 91.48 -48.56 REMARK 500 17 GLN A 30 95.41 -61.94 REMARK 500 17 GLU A 37 -73.70 -32.68 REMARK 500 17 GLN A 55 112.44 -161.43 REMARK 500 17 LYS A 60 88.66 -68.39 REMARK 500 17 ASP A 67 34.52 -96.48 REMARK 500 17 GLN A 73 52.85 35.57 REMARK 500 17 SER A 120 -28.46 -38.27 REMARK 500 18 ILE A 8 102.57 -40.94 REMARK 500 18 ASP A 13 143.62 -174.95 REMARK 500 18 GLU A 37 -72.48 -31.87 REMARK 500 18 ALA A 49 151.89 -38.08 REMARK 500 18 LYS A 60 96.59 -49.34 REMARK 500 18 VAL A 70 -36.62 -35.10 REMARK 500 18 GLN A 73 47.36 37.80 REMARK 500 18 TYR A 121 -70.79 -38.68 REMARK 500 18 ARG A 136 171.73 -45.76 REMARK 500 19 SER A 2 146.11 -170.40 REMARK 500 19 ILE A 8 101.92 -38.22 REMARK 500 19 PRO A 9 98.75 -69.79 REMARK 500 19 ASP A 13 142.30 -174.49 REMARK 500 19 LYS A 22 164.08 -47.73 REMARK 500 19 LEU A 25 107.00 -48.86 REMARK 500 19 GLU A 37 -75.09 -32.40 REMARK 500 19 GLN A 55 107.23 -166.85 REMARK 500 19 LYS A 60 104.33 -59.60 REMARK 500 19 ASP A 67 75.06 -117.43 REMARK 500 19 ASN A 69 68.28 -115.48 REMARK 500 19 VAL A 70 -28.36 -39.58 REMARK 500 19 ALA A 105 -36.22 -39.22 REMARK 500 19 SER A 111 -32.21 -39.82 REMARK 500 20 ILE A 8 101.77 -36.58 REMARK 500 20 PRO A 9 97.83 -69.70 REMARK 500 20 ASP A 13 149.07 -174.68 REMARK 500 20 PRO A 20 -170.95 -69.70 REMARK 500 20 ARG A 21 123.46 -175.29 REMARK 500 20 GLN A 55 118.09 -167.18 REMARK 500 20 ARG A 136 151.65 -46.12 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003005630.1 RELATED DB: TARGETDB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS BASED ON REFERENCE 2 IN THE REMARK 999 DATABASE, URP2_HUMAN.
DBREF 2YS3 A 8 137 UNP Q86UX7 URP2_HUMAN 349 478
SEQADV 2YS3 GLY A 1 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 SER A 2 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 SER A 3 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 GLY A 4 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 SER A 5 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 SER A 6 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 GLY A 7 UNP Q86UX7 EXPRESSION TAG
SEQRES 1 A 137 GLY SER SER GLY SER SER GLY ILE PRO GLU LEU LYS ASP SEQRES 2 A 137 HIS LEU ARG ILE PHE ARG PRO ARG LYS LEU THR LEU LYS SEQRES 3 A 137 GLY TYR ARG GLN HIS TRP VAL VAL PHE LYS GLU THR THR SEQRES 4 A 137 LEU SER TYR TYR LYS SER GLN ASP GLU ALA PRO GLY ASP SEQRES 5 A 137 PRO ILE GLN GLN LEU ASN LEU LYS GLY CYS GLU VAL VAL SEQRES 6 A 137 PRO ASP VAL ASN VAL SER GLY GLN LYS PHE CYS ILE LYS SEQRES 7 A 137 LEU LEU VAL PRO SER PRO GLU GLY MET SER GLU ILE TYR SEQRES 8 A 137 LEU ARG CYS GLN ASP GLU GLN GLN TYR ALA ARG TRP MET SEQRES 9 A 137 ALA GLY CYS ARG LEU ALA SER LYS GLY ARG THR MET ALA SEQRES 10 A 137 ASP SER SER TYR THR SER GLU VAL GLN ALA ILE LEU ALA SEQRES 11 A 137 PHE LEU SER LEU GLN ARG THR
HELIX 1 2 GLU A 97 SER A 111 1 15 HELIX 2 3 SER A 120 GLN A 135 1 16
SHEET 1 A 3 GLU A 10 LYS A 12 0 SHEET 2 A 3 GLN A 55 LEU A 57 -1 SHEET 3 A 3 TRP A 32 LYS A 36 -1 O PHE A 35 N LEU A 11 SHEET 4 A 3 THR A 39 TYR A 43 0 SHEET 1 B 4 ARG A 16 ILE A 17 0 SHEET 2 B 4 MET A 87 CYS A 94 -1 O ARG A 93 N ARG A 16 SHEET 3 B 4 PHE A 75 PRO A 82 -1 N PHE A 75 O CYS A 94 SHEET 4 B 4 GLU A 63 PRO A 66 -1 N GLU A 63 O LEU A 80
CISPEP 1 ALA A 49 PRO A 50 1 0.05 CISPEP 2 ALA A 49 PRO A 50 2 0.02 CISPEP 3 ALA A 49 PRO A 50 3 -0.04 CISPEP 4 ALA A 49 PRO A 50 4 0.04 CISPEP 5 ALA A 49 PRO A 50 5 0.03 CISPEP 6 ALA A 49 PRO A 50 6 -0.06 CISPEP 7 ALA A 49 PRO A 50 7 0.03 CISPEP 8 ALA A 49 PRO A 50 8 0.01 CISPEP 9 ALA A 49 PRO A 50 9 0.04 CISPEP 10 ALA A 49 PRO A 50 10 0.11 CISPEP 11 ALA A 49 PRO A 50 11 -0.01 CISPEP 12 ALA A 49 PRO A 50 12 -0.05 CISPEP 13 ALA A 49 PRO A 50 13 -0.03 CISPEP 14 ALA A 49 PRO A 50 14 -0.03 CISPEP 15 ALA A 49 PRO A 50 15 -0.01 CISPEP 16 ALA A 49 PRO A 50 16 0.06 CISPEP 17 ALA A 49 PRO A 50 17 -0.03 CISPEP 18 ALA A 49 PRO A 50 18 -0.02 CISPEP 19 ALA A 49 PRO A 50 19 0.00 CISPEP 20 ALA A 49 PRO A 50 20 0.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000