10 20 30 40 50 60 70 80 2YS1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 03-APR-07 2YS1
TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF DYNAMIN-2 FROM HUMAN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNAMIN-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNM2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060904-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PH DOMAIN, DYNAMIN 2, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,M.SATO,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2YS1 1 VERSN REVDAT 1 08-APR-08 2YS1 0
JRNL AUTH H.LI,M.SATO,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF DYNAMIN-2 JRNL TITL 2 FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YS1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027061.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM PH DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 8 150.19 -35.46 REMARK 500 1 LYS A 47 -67.34 -92.24 REMARK 500 1 PRO A 54 -179.80 -69.78 REMARK 500 1 MET A 68 134.99 -172.43 REMARK 500 1 GLU A 80 30.79 -88.87 REMARK 500 1 GLN A 81 47.60 38.24 REMARK 500 2 ILE A 16 83.18 -68.78 REMARK 500 2 ILE A 19 102.65 -40.79 REMARK 500 2 LEU A 21 123.71 -35.09 REMARK 500 2 MET A 22 54.44 -94.60 REMARK 500 2 ALA A 35 -33.61 -35.58 REMARK 500 2 THR A 79 -28.56 -37.09 REMARK 500 2 GLU A 80 32.67 -83.56 REMARK 500 2 GLN A 81 39.22 34.01 REMARK 500 2 ASN A 83 165.20 -47.67 REMARK 500 2 VAL A 84 -60.28 -127.40 REMARK 500 2 VAL A 101 -70.32 -43.32 REMARK 500 3 SER A 6 76.60 -101.93 REMARK 500 3 LEU A 21 42.48 -97.56 REMARK 500 3 LYS A 27 49.69 -88.03 REMARK 500 3 ASP A 56 -60.05 -97.22 REMARK 500 3 GLU A 64 55.03 -104.50 REMARK 500 3 PHE A 67 153.33 -48.01 REMARK 500 3 LYS A 71 -177.19 -52.34 REMARK 500 3 THR A 79 176.66 -53.45 REMARK 500 4 SER A 6 143.27 -34.53 REMARK 500 4 VAL A 8 155.80 -42.22 REMARK 500 4 LYS A 23 165.96 -45.19 REMARK 500 4 GLU A 44 45.91 -79.54 REMARK 500 4 GLU A 46 43.10 38.19 REMARK 500 4 LYS A 71 -176.23 -63.55 REMARK 500 4 ARG A 82 160.59 -44.03 REMARK 500 4 LYS A 86 -71.46 -48.36 REMARK 500 5 SER A 2 130.39 -35.07 REMARK 500 5 VAL A 8 148.87 -36.50 REMARK 500 5 ILE A 16 89.08 -58.09 REMARK 500 5 MET A 22 -56.00 -127.57 REMARK 500 5 SER A 26 -175.78 -60.71 REMARK 500 5 ALA A 35 -17.94 -49.61 REMARK 500 5 LYS A 50 -68.54 -91.52 REMARK 500 5 SER A 69 145.88 -35.14 REMARK 500 5 GLU A 80 -178.37 -65.24 REMARK 500 6 SER A 3 52.21 -91.73 REMARK 500 6 SER A 6 114.83 -171.56 REMARK 500 6 VAL A 8 135.72 -39.59 REMARK 500 6 ILE A 19 -50.71 -133.34 REMARK 500 6 ASN A 57 33.05 -93.58 REMARK 500 6 PHE A 67 45.70 -108.11 REMARK 500 6 GLU A 80 172.72 -55.70 REMARK 500 6 VAL A 84 -74.30 -73.40 REMARK 500 7 LYS A 50 -70.56 -83.93 REMARK 500 7 PHE A 67 34.80 39.88 REMARK 500 7 SER A 69 118.64 -161.14 REMARK 500 8 ARG A 10 146.80 -173.50 REMARK 500 8 SER A 20 49.92 -76.44 REMARK 500 8 LEU A 21 38.79 34.73 REMARK 500 8 SER A 26 154.38 -43.30 REMARK 500 8 LYS A 27 40.38 -84.63 REMARK 500 8 GLU A 44 30.99 -85.75 REMARK 500 8 TYR A 51 117.48 -168.63 REMARK 500 8 PHE A 67 167.74 -48.90 REMARK 500 8 MET A 68 153.48 -40.25 REMARK 500 8 SER A 69 156.50 -43.62 REMARK 500 8 GLU A 80 -178.49 -59.17 REMARK 500 8 GLN A 81 40.40 -90.11 REMARK 500 8 VAL A 84 -75.12 -119.33 REMARK 500 8 GLN A 98 -35.48 -37.20 REMARK 500 8 ASP A 102 -38.46 -34.57 REMARK 500 9 SER A 2 135.37 -37.90 REMARK 500 9 LYS A 23 49.48 -81.57 REMARK 500 9 LYS A 50 -70.02 -80.03 REMARK 500 9 GLU A 64 46.65 -104.39 REMARK 500 9 GLU A 80 37.61 -84.75 REMARK 500 9 GLN A 81 30.37 36.82 REMARK 500 10 SER A 5 96.55 -65.00 REMARK 500 10 SER A 6 147.38 -37.13 REMARK 500 10 SER A 26 170.13 -55.34 REMARK 500 10 GLU A 44 45.31 -81.44 REMARK 500 10 GLU A 46 51.83 70.03 REMARK 500 10 TYR A 51 135.62 -174.94 REMARK 500 10 GLU A 64 135.73 -38.53 REMARK 500 10 VAL A 84 -65.78 -99.91 REMARK 500 10 VAL A 101 -71.22 -40.72 REMARK 500 11 ILE A 16 94.81 -67.35 REMARK 500 11 ASN A 18 -70.48 -54.99 REMARK 500 11 ILE A 19 106.21 -51.46 REMARK 500 11 MET A 22 -179.70 -56.88 REMARK 500 11 LYS A 23 141.57 -36.70 REMARK 500 11 LYS A 47 -60.72 -104.22 REMARK 500 11 LYS A 50 -65.80 -98.53 REMARK 500 11 LYS A 65 108.93 -162.46 REMARK 500 11 LYS A 71 169.90 -45.91 REMARK 500 11 GLU A 80 -178.77 -54.97 REMARK 500 11 GLN A 81 36.09 -90.64 REMARK 500 12 VAL A 8 150.37 -39.66 REMARK 500 12 ASN A 18 -73.00 -51.07 REMARK 500 12 TYR A 51 148.99 -173.38 REMARK 500 12 GLN A 81 49.26 -76.96 REMARK 500 12 VAL A 84 -71.22 -45.73 REMARK 500 12 ASP A 87 -49.35 -130.59 REMARK 500 13 SER A 2 101.05 -58.53 REMARK 500 13 ILE A 19 104.00 -45.97 REMARK 500 13 LYS A 23 34.45 -95.65 REMARK 500 13 PRO A 54 -177.50 -69.79 REMARK 500 13 ASN A 57 32.99 -92.37 REMARK 500 13 GLN A 81 43.74 -88.05 REMARK 500 14 VAL A 8 150.00 -34.91 REMARK 500 14 ASN A 18 -70.95 -56.29 REMARK 500 14 ILE A 19 151.59 -44.91 REMARK 500 14 MET A 22 170.13 -57.52 REMARK 500 14 LYS A 23 106.67 -41.38 REMARK 500 14 ASN A 57 34.97 -92.22 REMARK 500 14 GLU A 64 43.05 31.63 REMARK 500 14 PHE A 67 53.87 37.61 REMARK 500 14 ASN A 70 132.82 -170.80 REMARK 500 14 GLU A 80 32.60 -95.58 REMARK 500 14 GLN A 81 42.69 34.35 REMARK 500 15 ARG A 10 143.42 -174.08 REMARK 500 15 ASN A 18 -72.84 -37.26 REMARK 500 15 ILE A 19 154.59 -43.85 REMARK 500 15 LYS A 27 61.50 -114.14 REMARK 500 15 GLU A 64 133.72 -35.29 REMARK 500 15 LYS A 65 58.06 -107.31 REMARK 500 15 LYS A 71 -179.75 -55.73 REMARK 500 15 ASP A 87 -34.38 -130.02 REMARK 500 16 SER A 5 173.95 -52.99 REMARK 500 16 SER A 6 41.61 37.05 REMARK 500 16 VAL A 8 138.83 -38.71 REMARK 500 16 ILE A 16 90.67 -66.81 REMARK 500 16 ASN A 18 -70.52 -34.34 REMARK 500 16 ILE A 19 137.75 -36.59 REMARK 500 16 SER A 20 159.23 -39.22 REMARK 500 16 GLU A 36 -62.75 -94.79 REMARK 500 16 LYS A 59 145.43 -170.22 REMARK 500 16 GLU A 80 -176.88 -62.33 REMARK 500 17 VAL A 8 148.50 -34.70 REMARK 500 17 ILE A 19 83.15 -55.64 REMARK 500 17 SER A 20 -175.31 -60.32 REMARK 500 17 LYS A 23 97.76 -64.00 REMARK 500 17 LYS A 71 143.73 -35.75 REMARK 500 17 GLN A 81 79.05 -64.51 REMARK 500 18 ILE A 16 87.89 -63.09 REMARK 500 18 SER A 20 153.11 -40.21 REMARK 500 18 MET A 22 34.88 34.07 REMARK 500 18 LYS A 23 126.49 -34.79 REMARK 500 18 PRO A 54 -178.88 -69.82 REMARK 500 18 HIS A 72 91.31 -65.79 REMARK 500 18 LYS A 86 -71.80 -40.50 REMARK 500 19 ILE A 16 93.24 -56.91 REMARK 500 19 MET A 22 -71.89 -78.72 REMARK 500 19 LYS A 23 171.19 -46.55 REMARK 500 19 LYS A 50 -69.76 -91.85 REMARK 500 19 ASN A 57 33.10 -96.45 REMARK 500 19 SER A 69 124.68 -39.07 REMARK 500 19 LYS A 71 152.44 -37.89 REMARK 500 20 SER A 3 95.90 -58.97 REMARK 500 20 VAL A 8 138.75 -39.97 REMARK 500 20 ASN A 18 -71.11 -34.46 REMARK 500 20 ILE A 19 150.64 -44.15 REMARK 500 20 VAL A 63 158.45 -42.02 REMARK 500 20 GLN A 81 95.42 -57.77 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSB001040670.1 RELATED DB: TARGETDB
DBREF 2YS1 A 8 113 UNP P50570 DYN2_HUMAN 520 625
SEQADV 2YS1 GLY A 1 UNP P50570 EXPRESSION TAG SEQADV 2YS1 SER A 2 UNP P50570 EXPRESSION TAG SEQADV 2YS1 SER A 3 UNP P50570 EXPRESSION TAG SEQADV 2YS1 GLY A 4 UNP P50570 EXPRESSION TAG SEQADV 2YS1 SER A 5 UNP P50570 EXPRESSION TAG SEQADV 2YS1 SER A 6 UNP P50570 EXPRESSION TAG SEQADV 2YS1 GLY A 7 UNP P50570 EXPRESSION TAG
SEQRES 1 A 113 GLY SER SER GLY SER SER GLY VAL ILE ARG ARG GLY TRP SEQRES 2 A 113 LEU THR ILE ASN ASN ILE SER LEU MET LYS GLY GLY SER SEQRES 3 A 113 LYS GLU TYR TRP PHE VAL LEU THR ALA GLU SER LEU SER SEQRES 4 A 113 TRP TYR LYS ASP GLU GLU GLU LYS GLU LYS LYS TYR MET SEQRES 5 A 113 LEU PRO LEU ASP ASN LEU LYS ILE ARG ASP VAL GLU LYS SEQRES 6 A 113 GLY PHE MET SER ASN LYS HIS VAL PHE ALA ILE PHE ASN SEQRES 7 A 113 THR GLU GLN ARG ASN VAL TYR LYS ASP LEU ARG GLN ILE SEQRES 8 A 113 GLU LEU ALA CYS ASP SER GLN GLU ASP VAL ASP SER TRP SEQRES 9 A 113 LYS ALA SER PHE LEU ARG ALA GLY VAL
HELIX 1 1 GLN A 98 ALA A 111 1 14
SHEET 1 A 7 LYS A 49 LEU A 53 0 SHEET 2 A 7 SER A 37 TYR A 41 -1 N LEU A 38 O LEU A 53 SHEET 3 A 7 GLU A 28 THR A 34 -1 N TRP A 30 O TYR A 41 SHEET 4 A 7 ARG A 10 ILE A 16 -1 N ARG A 10 O LEU A 33 SHEET 5 A 7 GLN A 90 ALA A 94 -1 O ALA A 94 N THR A 15 SHEET 6 A 7 VAL A 73 ASN A 78 -1 N PHE A 74 O LEU A 93 SHEET 7 A 7 LEU A 58 ASP A 62 -1 N LYS A 59 O PHE A 77
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000