10 20 30 40 50 60 70 80 2YS0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 03-APR-07 2YS0
TITLE SOLUTION STRUCTURE OF THE SOMATOMEDIN B DOMAIN OF HUMAN TITLE 2 ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY TITLE 3 MEMBER
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE COMPND 3 FAMILY MEMBER 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SOMATOMEDIN_B; COMPND 6 SYNONYM: 'ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE COMPND 7 1, E-NPP 1, PHOSPHODIESTERASE I/NUCLEOTIDE PYROPHOSPHATASE COMPND 8 1, PLASMA-CELL MEMBRANE GLYCOPROTEIN PC-1; COMPND 9 EC: 3.1.4.1, 3.6.1.9; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENPP1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050118-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS E-NPP 1, PHOSPHODIESTERASE I/NUCLEOTIDE PYROPHOSPHATASE 1, KEYWDS 2 PLASMA-CELL MEMBRANE GLYCOPROTEIN PC-1, STRUCTURAL GENOMICS, KEYWDS 3 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 4 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.ABE,A.SASAGAWA,N.TOCHIO,T.TOMIZAWA,S.KOSHIBA,M.INOUE, AUTHOR 2 T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2YS0 1 VERSN REVDAT 1 09-OCT-07 2YS0 0
JRNL AUTH H.ABE,A.SASAGAWA,N.TOCHIO,T.TOMIZAWA,S.KOSHIBA, JRNL AUTH 2 M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SOMATOMEDIN B DOMAIN OF JRNL TITL 2 HUMAN ECTONUCLEOTIDE JRNL TITL 3 PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YS0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027060.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.80MM SAMPLE U-15N,13C; 20MM REMARK 210 D-TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 8 41.84 -82.94 REMARK 500 1 CYS A 27 40.39 -101.19 REMARK 500 1 CYS A 38 155.45 -43.71 REMARK 500 1 ASN A 40 41.83 -107.43 REMARK 500 1 GLN A 46 48.38 -78.95 REMARK 500 1 SER A 50 119.02 -164.55 REMARK 500 1 SER A 55 48.66 -81.74 REMARK 500 2 THR A 9 164.21 -47.70 REMARK 500 2 CYS A 15 99.35 -44.25 REMARK 500 2 CYS A 27 42.74 -96.84 REMARK 500 3 TRP A 8 40.95 -96.08 REMARK 500 3 CYS A 15 107.93 -42.09 REMARK 500 3 CYS A 38 159.61 -41.54 REMARK 500 3 GLN A 46 43.73 -79.87 REMARK 500 3 SER A 54 153.65 -36.88 REMARK 500 4 TRP A 8 42.12 -82.42 REMARK 500 4 CYS A 15 108.26 -40.37 REMARK 500 4 SER A 23 159.57 -39.55 REMARK 500 4 ASP A 29 44.32 -80.30 REMARK 500 4 ASP A 30 -38.37 -131.48 REMARK 500 4 GLN A 46 43.92 -79.96 REMARK 500 4 SER A 50 105.70 -174.95 REMARK 500 5 CYS A 15 101.65 -36.13 REMARK 500 5 ARG A 19 46.28 35.77 REMARK 500 5 LEU A 20 66.06 -102.84 REMARK 500 5 SER A 23 119.87 -165.45 REMARK 500 5 CYS A 27 39.68 -92.68 REMARK 500 5 CYS A 38 170.52 -45.40 REMARK 500 5 SER A 50 41.30 -98.63 REMARK 500 5 PRO A 53 2.01 -69.73 REMARK 500 6 SER A 3 124.43 -172.70 REMARK 500 6 SER A 5 79.47 -111.31 REMARK 500 6 SER A 6 41.78 -86.00 REMARK 500 6 CYS A 15 89.88 -48.66 REMARK 500 6 LYS A 18 41.91 -105.68 REMARK 500 6 CYS A 27 40.76 -106.54 REMARK 500 6 ASP A 30 35.93 -84.54 REMARK 500 6 ASN A 40 42.10 -106.98 REMARK 500 6 SER A 51 141.14 -39.94 REMARK 500 6 PRO A 53 85.99 -69.72 REMARK 500 7 CYS A 15 105.49 -45.76 REMARK 500 7 ARG A 19 125.18 -37.64 REMARK 500 7 CYS A 27 42.72 -91.36 REMARK 500 7 ASP A 29 42.87 -80.76 REMARK 500 7 ASP A 30 -33.68 -133.11 REMARK 500 7 CYS A 38 157.34 -39.95 REMARK 500 7 PRO A 53 89.95 -69.78 REMARK 500 8 CYS A 15 100.70 -33.47 REMARK 500 8 LYS A 18 154.99 -41.22 REMARK 500 8 ARG A 22 98.78 -38.86 REMARK 500 8 CYS A 27 42.99 -96.84 REMARK 500 8 ASP A 30 -33.16 -130.14 REMARK 500 8 CYS A 38 137.78 -39.26 REMARK 500 8 ASN A 40 43.56 -103.10 REMARK 500 8 PRO A 53 91.21 -69.78 REMARK 500 9 THR A 9 145.09 -37.12 REMARK 500 9 CYS A 15 124.56 -34.35 REMARK 500 9 THR A 21 -31.79 -39.90 REMARK 500 9 ARG A 22 50.25 -100.48 REMARK 500 9 CYS A 37 132.50 -35.32 REMARK 500 9 ASN A 40 45.46 -106.70 REMARK 500 9 SER A 43 -37.52 -36.96 REMARK 500 9 CYS A 45 -73.86 -81.59 REMARK 500 9 GLN A 46 44.28 -80.05 REMARK 500 9 SER A 50 -60.69 -92.35 REMARK 500 10 SER A 2 174.26 -56.69 REMARK 500 10 SER A 6 135.58 -34.61 REMARK 500 10 CYS A 10 164.40 -49.61 REMARK 500 10 CYS A 15 98.31 -34.15 REMARK 500 10 THR A 21 175.81 -49.56 REMARK 500 10 ARG A 22 101.46 -34.52 REMARK 500 10 CYS A 27 44.63 -92.21 REMARK 500 10 ASP A 29 47.52 -77.29 REMARK 500 10 ASP A 30 -37.76 -132.00 REMARK 500 10 CYS A 38 150.17 -48.40 REMARK 500 10 SER A 50 137.91 -171.98 REMARK 500 10 SER A 55 126.15 -35.14 REMARK 500 11 TRP A 8 41.95 -108.73 REMARK 500 11 CYS A 15 103.56 -34.14 REMARK 500 11 CYS A 27 40.29 -89.80 REMARK 500 11 CYS A 37 119.24 -34.49 REMARK 500 11 CYS A 38 154.84 -43.78 REMARK 500 11 SER A 50 135.17 -36.56 REMARK 500 11 PRO A 53 2.84 -69.75 REMARK 500 12 TRP A 8 42.95 -102.18 REMARK 500 12 CYS A 15 116.00 -38.35 REMARK 500 12 ARG A 19 113.84 -36.66 REMARK 500 12 LEU A 20 174.85 -47.46 REMARK 500 12 ARG A 22 43.56 38.63 REMARK 500 12 CYS A 27 43.05 -88.45 REMARK 500 12 CYS A 38 152.05 -35.03 REMARK 500 12 ASN A 40 45.20 -97.71 REMARK 500 12 PRO A 53 -175.69 -69.69 REMARK 500 13 SER A 6 -62.32 -95.48 REMARK 500 13 CYS A 15 93.59 -32.37 REMARK 500 13 CYS A 27 44.46 -92.88 REMARK 500 13 ASP A 30 36.15 -87.89 REMARK 500 13 CYS A 37 115.21 -33.92 REMARK 500 13 ASN A 40 35.47 -95.31 REMARK 500 13 CYS A 45 -70.38 -72.30 REMARK 500 13 PRO A 53 86.66 -69.78 REMARK 500 14 SER A 3 -62.29 -106.07 REMARK 500 14 CYS A 15 105.52 -34.42 REMARK 500 14 CYS A 27 42.43 -90.10 REMARK 500 14 LYS A 49 42.13 -93.51 REMARK 500 14 SER A 55 135.03 -34.74 REMARK 500 15 SER A 6 97.27 -52.37 REMARK 500 15 TRP A 8 41.03 -101.09 REMARK 500 15 ARG A 22 40.80 34.40 REMARK 500 15 CYS A 27 40.26 -103.64 REMARK 500 15 ASP A 29 36.17 -83.68 REMARK 500 16 CYS A 15 133.18 -34.50 REMARK 500 16 LEU A 20 36.88 -83.96 REMARK 500 16 THR A 21 101.76 -51.99 REMARK 500 16 CYS A 27 40.01 -82.17 REMARK 500 16 ASP A 30 -33.26 -37.92 REMARK 500 16 CYS A 38 149.16 -36.31 REMARK 500 16 ASN A 40 51.60 -110.02 REMARK 500 16 GLN A 46 81.66 -63.80 REMARK 500 16 PRO A 53 2.74 -69.76 REMARK 500 16 SER A 55 42.19 -90.73 REMARK 500 17 CYS A 15 99.30 -44.03 REMARK 500 17 ARG A 22 43.79 -81.50 REMARK 500 17 CYS A 27 37.40 -88.16 REMARK 500 17 CYS A 37 129.19 -36.57 REMARK 500 17 CYS A 38 168.56 -43.97 REMARK 500 17 ASN A 40 55.39 -115.02 REMARK 500 17 GLU A 48 100.23 -59.02 REMARK 500 17 SER A 51 90.72 -64.09 REMARK 500 18 CYS A 15 93.48 -33.13 REMARK 500 18 ARG A 19 110.14 -171.65 REMARK 500 18 ASN A 40 40.35 -106.20 REMARK 500 18 LYS A 49 83.00 -68.17 REMARK 500 18 PRO A 53 2.74 -69.71 REMARK 500 18 SER A 54 109.03 -34.37 REMARK 500 19 SER A 5 43.27 39.34 REMARK 500 19 LYS A 12 -70.52 -52.09 REMARK 500 19 CYS A 15 94.70 -33.29 REMARK 500 19 ARG A 22 39.12 30.72 REMARK 500 19 CYS A 27 41.76 -85.24 REMARK 500 19 CYS A 38 172.26 -59.55 REMARK 500 20 CYS A 15 109.34 -34.45 REMARK 500 20 ARG A 19 144.86 -34.57 REMARK 500 20 THR A 21 -62.50 -101.62 REMARK 500 20 ARG A 22 81.31 -69.97 REMARK 500 20 SER A 23 136.77 -171.37 REMARK 500 20 CYS A 27 39.87 -99.47 REMARK 500 20 ASN A 40 40.89 -105.38 REMARK 500 20 GLN A 46 43.70 -83.09 REMARK 500 20 PRO A 53 2.84 -69.75 REMARK 500 20 SER A 54 101.28 -59.42 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000477.1 RELATED DB: TARGETDB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 SWISSPROT SHOWS THAT THERE IS VARIANT AT THIS POSITION
DBREF 2YS0 A 8 50 UNP P22413 ENPP1_HUMAN 147 189
SEQADV 2YS0 GLY A 1 UNP P22413 EXPRESSION TAG SEQADV 2YS0 SER A 2 UNP P22413 EXPRESSION TAG SEQADV 2YS0 SER A 3 UNP P22413 EXPRESSION TAG SEQADV 2YS0 GLY A 4 UNP P22413 EXPRESSION TAG SEQADV 2YS0 SER A 5 UNP P22413 EXPRESSION TAG SEQADV 2YS0 SER A 6 UNP P22413 EXPRESSION TAG SEQADV 2YS0 GLY A 7 UNP P22413 EXPRESSION TAG SEQADV 2YS0 GLN A 34 UNP P22413 LYS 173 SEE REMARK 999 SEQADV 2YS0 SER A 51 UNP P22413 EXPRESSION TAG SEQADV 2YS0 GLY A 52 UNP P22413 EXPRESSION TAG SEQADV 2YS0 PRO A 53 UNP P22413 EXPRESSION TAG SEQADV 2YS0 SER A 54 UNP P22413 EXPRESSION TAG SEQADV 2YS0 SER A 55 UNP P22413 EXPRESSION TAG SEQADV 2YS0 GLY A 56 UNP P22413 EXPRESSION TAG
SEQRES 1 A 56 GLY SER SER GLY SER SER GLY TRP THR CYS ASN LYS PHE SEQRES 2 A 56 ARG CYS GLY GLU LYS ARG LEU THR ARG SER LEU CYS ALA SEQRES 3 A 56 CYS SER ASP ASP CYS LYS ASP GLN GLY ASP CYS CYS ILE SEQRES 4 A 56 ASN TYR SER SER VAL CYS GLN GLY GLU LYS SER SER GLY SEQRES 5 A 56 PRO SER SER GLY
HELIX 1 1 SER A 28 GLY A 35 1 8 HELIX 2 2 ASN A 40 CYS A 45 1 6
SSBOND 1 CYS A 10 CYS A 27 1555 1555 2.01 SSBOND 2 CYS A 15 CYS A 45 1555 1555 2.07 SSBOND 3 CYS A 25 CYS A 38 1555 1555 2.02 SSBOND 4 CYS A 31 CYS A 37 1555 1555 2.07
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000