10 20 30 40 50 60 70 80 2YRJ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL CYCLE 02-APR-07 2YRJ
TITLE SOLUTION STRUCTURE OF THE C2H2-TYPE ZINC FINGER DOMAIN (781- TITLE 2 813) FROM ZINC FINGER PROTEIN 473
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 473; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2H2-TYPE ZINC FINGER; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 100 HOMOLOG, ZFP-100; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF473; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P070115-35; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS C2H2-TYPE ZINC FINGER, ZINC FINGER PROTEIN 473, ZINC FINGER KEYWDS 2 PROTEIN 100 HOMOLOG ZFP-100, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI, CELL CYCLE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,K.IZUMI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2YRJ 1 VERSN REVDAT 1 02-OCT-07 2YRJ 0
JRNL AUTH X.R.QIN,K.IZUMI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C2H2-TYPE ZINC FINGER JRNL TITL 2 DOMAIN (781-813) FROM ZINC FINGER PROTEIN 473 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YRJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027043.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.08MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL(PH REMARK 210 7.0); 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 0.05MM ZNCL2+1MM REMARK 210 IDA, 90% H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DELTA 4.3, NMRPIPE 20030801, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9820, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 10 170.89 -53.30 REMARK 500 1 CYS A 15 153.33 -48.30 REMARK 500 1 LYS A 20 -174.99 -60.87 REMARK 500 1 THR A 36 94.55 -56.13 REMARK 500 1 PRO A 43 96.61 -69.77 REMARK 500 1 SER A 45 42.24 38.12 REMARK 500 2 PRO A 40 94.24 -69.74 REMARK 500 2 SER A 45 41.86 -91.90 REMARK 500 3 CYS A 15 153.19 -49.54 REMARK 500 3 LYS A 20 -175.03 -61.65 REMARK 500 4 CYS A 15 153.93 -48.82 REMARK 500 4 LYS A 20 -176.44 -62.00 REMARK 500 4 PRO A 40 80.81 -69.73 REMARK 500 5 SER A 3 108.62 -165.83 REMARK 500 5 CYS A 15 151.49 -47.20 REMARK 500 5 LYS A 20 -174.94 -61.68 REMARK 500 5 THR A 36 110.23 -38.07 REMARK 500 5 PRO A 40 96.69 -69.78 REMARK 500 6 SER A 5 42.62 -90.82 REMARK 500 6 SER A 6 42.06 -81.94 REMARK 500 6 CYS A 15 155.26 -48.17 REMARK 500 6 LYS A 20 -176.57 -62.03 REMARK 500 6 PRO A 43 93.85 -69.75 REMARK 500 7 CYS A 15 152.38 -49.07 REMARK 500 7 LYS A 20 -175.03 -62.33 REMARK 500 7 PRO A 40 92.41 -69.79 REMARK 500 7 SER A 45 48.68 -82.79 REMARK 500 8 SER A 2 135.80 -173.43 REMARK 500 8 CYS A 15 154.54 -48.72 REMARK 500 8 LYS A 20 -174.82 -61.57 REMARK 500 8 THR A 36 94.82 -69.92 REMARK 500 9 CYS A 15 152.97 -48.97 REMARK 500 9 LYS A 20 -177.82 -62.37 REMARK 500 11 SER A 6 133.84 -35.11 REMARK 500 11 CYS A 15 152.70 -47.58 REMARK 500 11 LYS A 20 -174.94 -63.25 REMARK 500 11 GLU A 38 106.93 -56.88 REMARK 500 12 SER A 5 150.34 -44.29 REMARK 500 12 CYS A 15 153.48 -48.14 REMARK 500 12 LYS A 20 -174.52 -63.13 REMARK 500 12 HIS A 35 30.78 -89.17 REMARK 500 13 THR A 8 40.04 36.25 REMARK 500 13 LYS A 20 -174.83 -61.20 REMARK 500 13 SER A 44 104.83 -51.62 REMARK 500 14 THR A 8 -50.40 -130.35 REMARK 500 14 CYS A 15 151.84 -47.69 REMARK 500 14 LYS A 20 -174.89 -61.33 REMARK 500 14 PRO A 40 1.51 -69.77 REMARK 500 14 SER A 41 107.65 -37.06 REMARK 500 15 THR A 8 99.33 -50.75 REMARK 500 15 CYS A 15 150.71 -47.66 REMARK 500 15 LYS A 20 -175.56 -61.96 REMARK 500 15 PRO A 40 1.96 -69.76 REMARK 500 16 LYS A 20 -175.10 -58.94 REMARK 500 17 CYS A 15 152.54 -49.14 REMARK 500 17 LYS A 20 -174.49 -59.92 REMARK 500 17 GLU A 38 119.67 -37.69 REMARK 500 18 SER A 2 104.75 -59.87 REMARK 500 18 SER A 5 175.57 -56.69 REMARK 500 18 CYS A 15 154.60 -48.04 REMARK 500 18 LYS A 20 -174.94 -62.64 REMARK 500 18 SER A 41 119.60 -36.76 REMARK 500 18 PRO A 43 2.16 -69.72 REMARK 500 19 CYS A 15 154.72 -47.97 REMARK 500 19 LYS A 20 -176.04 -62.24 REMARK 500 19 SER A 45 42.84 -99.88 REMARK 500 20 CYS A 15 154.17 -49.40 REMARK 500 20 LYS A 20 -179.08 -60.30 REMARK 500 20 THR A 36 87.72 -60.70 REMARK 500 20 PRO A 40 85.06 -69.73 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 CYS A 18 SG 105.0 REMARK 620 3 HIS A 31 NE2 104.9 108.7 REMARK 620 4 HIS A 35 NE2 114.0 117.2 106.4 REMARK 620 N 1 2 3
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YRH RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: HSO003003493.2 RELATED DB: TARGETDB
DBREF 2YRJ A 8 40 UNP Q8WTR7 ZN473_HUMAN 781 813
SEQADV 2YRJ GLY A 1 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ SER A 2 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ SER A 3 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ GLY A 4 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ SER A 5 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ SER A 6 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ GLY A 7 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ SER A 41 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ GLY A 42 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ PRO A 43 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ SER A 44 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ SER A 45 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YRJ GLY A 46 UNP Q8WTR7 EXPRESSION TAG
SEQRES 1 A 46 GLY SER SER GLY SER SER GLY THR GLY GLU LYS PRO TYR SEQRES 2 A 46 ARG CYS GLY GLU CYS GLY LYS ALA PHE ALA GLN LYS ALA SEQRES 3 A 46 ASN LEU THR GLN HIS GLN ARG ILE HIS THR GLY GLU LYS SEQRES 4 A 46 PRO SER GLY PRO SER SER GLY
HET ZN A 200 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 GLN A 24 ARG A 33 1 10
SHEET 1 A 2 TYR A 13 ARG A 14 0 SHEET 2 A 2 ALA A 21 PHE A 22 -1 O PHE A 22 N TYR A 13
LINK SG CYS A 15 ZN ZN A 200 1555 1555 2.35 LINK SG CYS A 18 ZN ZN A 200 1555 1555 2.25 LINK NE2 HIS A 31 ZN ZN A 200 1555 1555 2.06 LINK NE2 HIS A 35 ZN ZN A 200 1555 1555 2.05
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000