10 20 30 40 50 60 70 80 2YRD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN TRANSPORT 02-APR-07 2YRD
TITLE SOLUTION STRUCTURE OF THE ZF-SEC23_SEC24 FROM HUMAN SEC23A TITLE 2 MUTANT V69A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC23A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-SEC23_SEC24; COMPND 5 SYNONYM: SEC23-RELATED PROTEIN A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEC23A; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060613-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ZINC BINDING, COPII, COAT PROTEIN COMPLEX-II, ENDOPLASMIC KEYWDS 2 RETICULUM, GOLGI, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 PROTEIN TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2YRD 1 VERSN REVDAT 1 02-OCT-07 2YRD 0
JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZF-SEC23_SEC24 FROM JRNL TITL 2 HUMAN SEC23A MUTANT V69A JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YRD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027037.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM UNIFORMLY 13C, 15N- REMARK 210 LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% REMARK 210 NAN3, 0.05MM ZNCL2, 1MM IDA, REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9822, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 61 149.93 -39.42 REMARK 500 1 PRO A 72 0.85 -69.80 REMARK 500 1 LYS A 81 46.43 34.72 REMARK 500 1 PHE A 87 -74.95 -103.86 REMARK 500 1 SER A 97 58.83 -110.33 REMARK 500 1 TYR A 98 45.78 -86.74 REMARK 500 1 ILE A 101 109.36 -40.19 REMARK 500 2 GLN A 75 105.10 -59.15 REMARK 500 2 PHE A 87 -72.62 -100.62 REMARK 500 2 ALA A 99 132.60 -37.86 REMARK 500 3 CYS A 61 149.62 -34.90 REMARK 500 3 CYS A 66 -70.33 -79.33 REMARK 500 3 ALA A 69 155.58 -42.11 REMARK 500 3 PRO A 72 0.77 -69.78 REMARK 500 3 TYR A 78 -30.31 -37.82 REMARK 500 3 LYS A 81 43.69 34.91 REMARK 500 3 PHE A 87 -73.87 -107.12 REMARK 500 3 ASN A 105 -66.53 -105.31 REMARK 500 4 ARG A 67 44.59 37.49 REMARK 500 4 PRO A 72 2.79 -69.77 REMARK 500 4 ASP A 77 70.75 -104.21 REMARK 500 4 LYS A 81 41.52 35.11 REMARK 500 4 PHE A 87 -74.68 -99.99 REMARK 500 4 TYR A 98 37.48 -85.47 REMARK 500 5 SER A 52 42.92 -81.21 REMARK 500 5 ARG A 67 41.82 37.98 REMARK 500 5 CYS A 74 165.57 -48.37 REMARK 500 5 ASP A 77 70.70 -117.32 REMARK 500 5 LYS A 81 37.65 36.11 REMARK 500 5 PHE A 87 -74.93 -101.76 REMARK 500 5 ILE A 101 111.96 -36.76 REMARK 500 6 SER A 51 42.69 70.54 REMARK 500 6 CYS A 66 -70.40 -85.75 REMARK 500 6 TYR A 78 -32.17 -37.65 REMARK 500 6 PHE A 87 -75.18 -113.41 REMARK 500 7 ARG A 63 109.60 -47.93 REMARK 500 7 ALA A 69 172.64 -53.73 REMARK 500 7 GLN A 75 88.25 -66.81 REMARK 500 7 ASP A 77 70.72 -113.84 REMARK 500 7 LYS A 81 49.91 34.11 REMARK 500 7 PHE A 87 -75.26 -98.33 REMARK 500 7 ILE A 101 133.78 -38.58 REMARK 500 7 GLN A 106 54.17 34.43 REMARK 500 8 SER A 51 104.39 -53.80 REMARK 500 8 ARG A 67 42.73 39.65 REMARK 500 8 GLN A 75 97.88 -64.31 REMARK 500 8 ASP A 77 72.81 -113.00 REMARK 500 8 LYS A 81 37.41 34.83 REMARK 500 8 PHE A 87 -75.13 -96.89 REMARK 500 8 LEU A 104 44.20 -85.18 REMARK 500 9 ARG A 63 126.92 -37.11 REMARK 500 9 ARG A 67 41.16 35.53 REMARK 500 9 GLN A 75 99.94 -64.17 REMARK 500 9 ASP A 77 79.57 -108.02 REMARK 500 9 TYR A 78 -33.55 -34.10 REMARK 500 9 LYS A 81 51.10 36.37 REMARK 500 9 PHE A 87 -75.02 -96.99 REMARK 500 9 SER A 97 39.68 -86.94 REMARK 500 9 TYR A 98 35.87 -84.43 REMARK 500 9 ALA A 99 42.77 -93.46 REMARK 500 10 SER A 52 103.18 -52.68 REMARK 500 10 CYS A 74 154.59 -45.89 REMARK 500 10 LYS A 81 50.71 36.16 REMARK 500 10 PHE A 87 -72.11 -99.21 REMARK 500 11 ARG A 63 158.57 -44.90 REMARK 500 11 CYS A 66 -65.67 -104.84 REMARK 500 11 PRO A 72 2.91 -69.68 REMARK 500 11 ASP A 77 55.67 -105.92 REMARK 500 11 LYS A 81 43.18 34.26 REMARK 500 11 PHE A 87 -75.59 -89.15 REMARK 500 12 CYS A 61 149.49 -34.96 REMARK 500 12 CYS A 66 -71.75 -79.67 REMARK 500 12 PRO A 72 1.39 -69.77 REMARK 500 12 ASP A 77 54.44 -95.56 REMARK 500 12 TYR A 78 -39.13 -34.64 REMARK 500 12 ALA A 80 30.41 -98.57 REMARK 500 12 LYS A 81 39.17 34.35 REMARK 500 12 PHE A 87 -75.57 -85.98 REMARK 500 12 TYR A 89 48.29 73.44 REMARK 500 12 ALA A 99 41.02 -108.50 REMARK 500 13 CYS A 61 162.84 -45.17 REMARK 500 13 CYS A 66 -64.49 -90.18 REMARK 500 13 ARG A 67 42.59 37.37 REMARK 500 13 LYS A 81 42.69 37.71 REMARK 500 13 PHE A 87 -75.03 -97.85 REMARK 500 14 SER A 54 87.20 -58.56 REMARK 500 14 LYS A 81 42.14 35.31 REMARK 500 14 PHE A 87 -75.05 -100.10 REMARK 500 14 TYR A 89 52.82 71.52 REMARK 500 14 ALA A 99 -71.53 -73.39 REMARK 500 15 ARG A 67 44.40 36.45 REMARK 500 15 ASP A 77 72.56 -100.85 REMARK 500 15 LYS A 81 47.94 34.75 REMARK 500 15 PHE A 87 -75.12 -97.74 REMARK 500 16 ARG A 67 41.64 37.53 REMARK 500 16 ASP A 77 58.76 -92.89 REMARK 500 16 TYR A 78 -39.91 -34.49 REMARK 500 16 LYS A 81 43.01 34.44 REMARK 500 16 PHE A 87 -74.99 -104.50 REMARK 500 16 SER A 97 41.97 -90.16 REMARK 500 17 SER A 51 133.71 -37.37 REMARK 500 17 SER A 55 120.89 -37.03 REMARK 500 17 ARG A 67 41.24 37.15 REMARK 500 17 ALA A 69 171.64 -52.40 REMARK 500 17 ASP A 77 53.82 -91.54 REMARK 500 17 TYR A 78 -37.54 -34.36 REMARK 500 17 ALA A 80 32.53 -96.97 REMARK 500 17 LYS A 81 45.19 34.88 REMARK 500 17 PHE A 87 -75.63 -87.20 REMARK 500 17 TYR A 89 50.30 72.21 REMARK 500 17 SER A 97 52.78 -107.78 REMARK 500 17 TYR A 98 45.44 -82.07 REMARK 500 17 ILE A 101 134.17 -34.97 REMARK 500 17 LEU A 104 -70.72 -69.43 REMARK 500 18 CYS A 66 -67.02 -91.02 REMARK 500 18 PRO A 72 1.22 -69.77 REMARK 500 18 PHE A 87 -75.09 -96.99 REMARK 500 18 SER A 97 45.96 -91.00 REMARK 500 18 TYR A 98 39.02 -81.99 REMARK 500 19 SER A 54 93.79 -64.00 REMARK 500 19 CYS A 66 -70.03 -80.63 REMARK 500 19 ALA A 69 162.03 -40.67 REMARK 500 19 PRO A 72 1.72 -69.74 REMARK 500 19 ASP A 77 52.70 -90.52 REMARK 500 19 ALA A 80 33.92 -90.78 REMARK 500 19 LYS A 81 36.62 34.43 REMARK 500 19 PHE A 87 -74.90 -97.43 REMARK 500 19 TYR A 98 41.81 -98.96 REMARK 500 20 PHE A 87 -73.60 -97.92 REMARK 500 20 ALA A 99 -60.52 -100.12 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 CYS A 66 SG 114.3 REMARK 620 3 CYS A 85 SG 111.6 104.9 REMARK 620 4 CYS A 88 SG 106.2 115.1 104.3 REMARK 620 N 1 2 3
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002022249.2 RELATED DB: TARGETDB
DBREF 2YRD A 57 108 UNP Q15436 SC23A_HUMAN 57 108
SEQADV 2YRD GLY A 50 UNP Q15436 EXPRESSION TAG SEQADV 2YRD SER A 51 UNP Q15436 EXPRESSION TAG SEQADV 2YRD SER A 52 UNP Q15436 EXPRESSION TAG SEQADV 2YRD GLY A 53 UNP Q15436 EXPRESSION TAG SEQADV 2YRD SER A 54 UNP Q15436 EXPRESSION TAG SEQADV 2YRD SER A 55 UNP Q15436 EXPRESSION TAG SEQADV 2YRD GLY A 56 UNP Q15436 EXPRESSION TAG SEQADV 2YRD ALA A 69 UNP Q15436 VAL 69 ENGINEERED
SEQRES 1 A 59 GLY SER SER GLY SER SER GLY GLU PRO VAL LEU CYS SER SEQRES 2 A 59 ARG THR THR CYS ARG ALA ALA LEU ASN PRO LEU CYS GLN SEQRES 3 A 59 VAL ASP TYR ARG ALA LYS LEU TRP ALA CYS ASN PHE CYS SEQRES 4 A 59 TYR GLN ARG ASN GLN PHE PRO PRO SER TYR ALA GLY ILE SEQRES 5 A 59 SER GLU LEU ASN GLN PRO ALA
HET ZN A 200 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 ILE A 101 GLN A 106 1 6
SHEET 1 A 3 GLN A 75 ASP A 77 0 SHEET 2 A 3 LEU A 82 ALA A 84 -1 O ALA A 84 N GLN A 75 SHEET 3 A 3 ARG A 91 GLN A 93 -1 O ASN A 92 N TRP A 83
LINK SG CYS A 61 ZN ZN A 200 1555 1555 2.29 LINK SG CYS A 66 ZN ZN A 200 1555 1555 2.26 LINK SG CYS A 85 ZN ZN A 200 1555 1555 2.35 LINK SG CYS A 88 ZN ZN A 200 1555 1555 2.28
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000