10 20 30 40 50 60 70 80 2YQI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 30-MAR-07 2YQI
TITLE SOLUTION STRUCTURE OF THE SECOND HMG-BOX DOMAIN FROM HIGH TITLE 2 MOBILITY GROUP PROTEIN B3
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN B3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG-BOX DOMAIN; COMPND 5 SYNONYM: HIGH MOBILITY GROUP PROTEIN 4, HMG-4, HIGH COMPND 6 MOBILITY GROUP PROTEIN 2A, HMG-2A; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HMGB3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061030-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HMG-BOX DOMAIN; HIGH MOBILITY GROUP PROTEIN B3; MOBILITY KEYWDS 2 GROUP PROTEIN 4; MOBILITY GROUP PROTEIN 2A, STRUCTURAL KEYWDS 3 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,F.HAYAHSI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2YQI 1 VERSN REVDAT 1 01-APR-08 2YQI 0
JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND HMG-BOX DOMAIN JRNL TITL 2 FROM HIGH MOBILITY GROUP PROTEIN B3 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YQI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027006.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.68MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20030801, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9820, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 19 -39.44 -37.77 REMARK 500 1 LEU A 51 161.02 -45.74 REMARK 500 2 LEU A 51 153.45 -43.84 REMARK 500 2 SER A 79 49.36 -96.80 REMARK 500 3 LEU A 51 151.33 -47.62 REMARK 500 3 LYS A 78 51.90 -99.25 REMARK 500 3 SER A 79 79.09 -58.40 REMARK 500 4 SER A 6 121.29 -173.78 REMARK 500 4 SER A 79 93.43 -42.83 REMARK 500 5 ILE A 37 -39.53 -34.18 REMARK 500 5 LYS A 72 -70.21 -64.99 REMARK 500 5 LYS A 78 92.61 -42.83 REMARK 500 6 SER A 2 97.29 -54.99 REMARK 500 6 ARG A 12 143.75 -35.85 REMARK 500 6 ILE A 37 -38.66 -39.25 REMARK 500 7 LEU A 19 -34.84 -39.21 REMARK 500 8 ASN A 8 148.78 -34.64 REMARK 500 9 ASN A 8 -61.91 -99.78 REMARK 500 9 LEU A 19 -37.18 -39.28 REMARK 500 9 LEU A 51 161.75 -40.85 REMARK 500 10 ARG A 12 135.44 -34.25 REMARK 500 10 LEU A 51 154.28 -48.69 REMARK 500 10 LYS A 80 108.51 -59.95 REMARK 500 11 SER A 6 53.41 38.83 REMARK 500 11 ASN A 8 47.07 37.91 REMARK 500 11 ASP A 73 -65.93 -94.14 REMARK 500 12 SER A 3 -55.97 -122.73 REMARK 500 12 GLU A 71 -35.36 -37.82 REMARK 500 13 LEU A 51 156.34 -41.81 REMARK 500 13 SER A 79 45.94 -100.64 REMARK 500 14 ILE A 37 -37.86 -35.65 REMARK 500 14 LEU A 51 160.77 -47.91 REMARK 500 14 LYS A 78 37.58 -86.29 REMARK 500 14 SER A 79 -53.84 -122.42 REMARK 500 14 LYS A 80 50.05 33.30 REMARK 500 15 ARG A 12 146.50 -34.82 REMARK 500 16 ASN A 8 -60.85 -105.93 REMARK 500 16 ARG A 12 143.56 -34.55 REMARK 500 17 SER A 5 131.95 -37.57 REMARK 500 17 ASN A 8 95.74 -62.30 REMARK 500 17 ILE A 35 150.23 -41.35 REMARK 500 17 ILE A 37 -39.18 -37.37 REMARK 500 17 SER A 79 31.47 35.50 REMARK 500 17 LYS A 80 171.77 -51.98 REMARK 500 18 SER A 6 133.84 -38.68 REMARK 500 18 SER A 79 94.49 -64.08 REMARK 500 19 PRO A 14 -170.79 -69.74 REMARK 500 19 LYS A 78 47.96 -90.84 REMARK 500 20 ASN A 8 -54.90 -131.28 REMARK 500 20 ILE A 37 -37.09 -36.67 REMARK 500 20 LEU A 51 156.53 -48.41 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002002696.2 RELATED DB: TARGETDB
DBREF 2YQI A 8 81 UNP O15347 HMGB3_HUMAN 91 164
SEQADV 2YQI GLY A 1 UNP O15347 EXPRESSION TAG SEQADV 2YQI SER A 2 UNP O15347 EXPRESSION TAG SEQADV 2YQI SER A 3 UNP O15347 EXPRESSION TAG SEQADV 2YQI GLY A 4 UNP O15347 EXPRESSION TAG SEQADV 2YQI SER A 5 UNP O15347 EXPRESSION TAG SEQADV 2YQI SER A 6 UNP O15347 EXPRESSION TAG SEQADV 2YQI GLY A 7 UNP O15347 EXPRESSION TAG
SEQRES 1 A 81 GLY SER SER GLY SER SER GLY ASN ALA PRO LYS ARG PRO SEQRES 2 A 81 PRO SER GLY PHE PHE LEU PHE CYS SER GLU PHE ARG PRO SEQRES 3 A 81 LYS ILE LYS SER THR ASN PRO GLY ILE SER ILE GLY ASP SEQRES 4 A 81 VAL ALA LYS LYS LEU GLY GLU MET TRP ASN ASN LEU ASN SEQRES 5 A 81 ASP SER GLU LYS GLN PRO TYR ILE THR LYS ALA ALA LYS SEQRES 6 A 81 LEU LYS GLU LYS TYR GLU LYS ASP VAL ALA ASP TYR LYS SEQRES 7 A 81 SER LYS GLY
HELIX 1 1 SER A 15 ASN A 32 1 18 HELIX 2 2 SER A 36 LEU A 51 1 16 HELIX 3 3 ASN A 52 LYS A 78 1 27
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000