10 20 30 40 50 60 70 80 2YQD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION 30-MAR-07 2YQD
TITLE SOLUTION STRUCTURE OF THE FIFTH BROMODOMAIN FROM MOUSE TITLE 2 POLYBROMO-1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYBROMO-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROMODOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PB1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060821-09; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS BROMODOMAIN, FOUR HELICES, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, GENE REGULATION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.SANO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2YQD 1 VERSN REVDAT 1 02-OCT-07 2YQD 0
JRNL AUTH R.SANO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIFTH BROMODOMAIN FROM JRNL TITL 2 MOUSE POLYBROMO-1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YQD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027001.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.92MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20060702, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9820, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 11 97.93 -69.08 REMARK 500 1 LEU A 20 -34.27 -35.19 REMARK 500 1 TYR A 30 133.70 -37.87 REMARK 500 1 ARG A 34 -67.50 -105.13 REMARK 500 1 GLU A 50 -74.14 -75.56 REMARK 500 1 LYS A 60 72.35 -117.82 REMARK 500 1 ALA A 73 33.67 -86.23 REMARK 500 1 ASN A 74 49.27 36.50 REMARK 500 1 TYR A 76 173.05 -54.71 REMARK 500 1 PRO A 99 2.51 -69.69 REMARK 500 1 TYR A 104 -70.11 -62.87 REMARK 500 1 ARG A 118 129.20 -34.53 REMARK 500 2 MET A 13 133.03 -34.52 REMARK 500 2 ASN A 74 47.50 34.65 REMARK 500 2 PRO A 99 2.16 -69.72 REMARK 500 2 SER A 101 173.77 -50.77 REMARK 500 3 LYS A 11 -57.58 -122.08 REMARK 500 3 MET A 13 142.73 -39.25 REMARK 500 3 TYR A 30 138.73 -37.74 REMARK 500 3 ARG A 34 -70.47 -107.04 REMARK 500 3 LEU A 43 -71.60 -92.17 REMARK 500 3 GLU A 50 -75.01 -60.11 REMARK 500 3 ASN A 74 53.46 38.17 REMARK 500 3 ASP A 80 -37.53 -36.26 REMARK 500 3 PRO A 99 2.64 -69.84 REMARK 500 3 SER A 101 168.73 -45.58 REMARK 500 4 SER A 2 42.48 38.72 REMARK 500 4 TYR A 30 132.34 -34.47 REMARK 500 4 LEU A 43 -73.42 -85.39 REMARK 500 4 SER A 47 -174.94 -66.03 REMARK 500 4 LYS A 60 75.64 -119.26 REMARK 500 4 TYR A 76 176.74 -58.45 REMARK 500 4 GLN A 77 -71.59 -110.01 REMARK 500 4 TYR A 104 -70.98 -52.85 REMARK 500 4 ARG A 118 122.82 -38.46 REMARK 500 5 SER A 10 44.53 34.30 REMARK 500 5 LYS A 11 154.73 -36.52 REMARK 500 5 TYR A 12 -56.15 -125.68 REMARK 500 5 TYR A 30 135.68 -37.02 REMARK 500 5 ARG A 34 -67.74 -104.94 REMARK 500 5 GLU A 50 -73.94 -68.31 REMARK 500 5 LEU A 51 75.14 -112.04 REMARK 500 5 ILE A 58 108.56 -50.55 REMARK 500 5 ASN A 74 32.67 39.48 REMARK 500 5 GLN A 77 -31.71 -130.43 REMARK 500 5 THR A 117 -32.28 -37.85 REMARK 500 6 SER A 2 90.34 -64.24 REMARK 500 6 SER A 3 82.76 -64.99 REMARK 500 6 TYR A 12 147.05 -173.11 REMARK 500 6 TYR A 30 136.56 -34.80 REMARK 500 6 ARG A 34 -62.44 -102.86 REMARK 500 6 LYS A 60 71.43 -114.98 REMARK 500 6 ILE A 67 -65.74 -93.20 REMARK 500 6 GLN A 77 -31.82 -130.07 REMARK 500 6 TYR A 96 -60.52 -96.66 REMARK 500 6 SER A 101 170.32 -52.88 REMARK 500 6 ARG A 118 117.54 -35.94 REMARK 500 7 SER A 10 53.75 -119.84 REMARK 500 7 TYR A 30 115.19 -36.17 REMARK 500 7 ASN A 74 45.72 34.87 REMARK 500 7 GLN A 77 -36.22 -131.83 REMARK 500 8 TYR A 30 113.52 -36.16 REMARK 500 8 ILE A 67 -62.66 -92.03 REMARK 500 8 TYR A 76 171.26 -58.76 REMARK 500 8 CYS A 94 36.92 -86.71 REMARK 500 8 THR A 95 -62.69 -95.90 REMARK 500 9 TYR A 30 136.11 -35.85 REMARK 500 9 ASP A 32 -175.04 -68.35 REMARK 500 9 GLU A 50 -72.45 -73.18 REMARK 500 9 ILE A 67 -70.20 -51.87 REMARK 500 9 ASN A 74 38.51 37.07 REMARK 500 9 TYR A 76 -178.85 -64.04 REMARK 500 10 TYR A 30 133.31 -35.90 REMARK 500 10 TYR A 76 -175.25 -68.88 REMARK 500 10 PRO A 99 2.57 -69.73 REMARK 500 10 TYR A 104 -74.04 -63.52 REMARK 500 10 ARG A 118 99.52 -41.00 REMARK 500 11 LYS A 8 106.06 -168.61 REMARK 500 11 LEU A 20 -70.35 -47.16 REMARK 500 11 ASP A 32 -179.05 -63.04 REMARK 500 11 ARG A 37 99.96 -63.21 REMARK 500 11 SER A 47 -175.07 -68.79 REMARK 500 11 LEU A 51 108.61 -163.43 REMARK 500 11 THR A 57 -73.36 -54.49 REMARK 500 11 VAL A 87 -70.80 -39.37 REMARK 500 11 GLU A 100 43.97 -106.54 REMARK 500 12 MET A 13 165.64 -42.52 REMARK 500 12 TYR A 30 136.30 -39.43 REMARK 500 12 ASN A 91 -35.01 -38.61 REMARK 500 12 PRO A 99 0.15 -69.74 REMARK 500 13 LYS A 8 89.43 -66.81 REMARK 500 13 SER A 10 -70.54 -106.40 REMARK 500 13 MET A 13 170.63 -53.09 REMARK 500 13 ARG A 34 -66.21 -105.25 REMARK 500 13 LEU A 43 -73.41 -80.92 REMARK 500 13 PRO A 52 0.98 -69.74 REMARK 500 13 PRO A 61 84.96 -69.69 REMARK 500 13 PRO A 99 0.11 -69.74 REMARK 500 13 TYR A 104 -71.84 -63.79 REMARK 500 14 LYS A 8 -47.92 -131.45 REMARK 500 14 LYS A 9 156.27 -47.95 REMARK 500 14 TYR A 30 139.52 -34.83 REMARK 500 14 ASP A 32 -174.93 -68.85 REMARK 500 14 LEU A 43 -75.07 -83.65 REMARK 500 14 ARG A 48 -34.65 -38.82 REMARK 500 14 LYS A 60 77.44 -117.64 REMARK 500 14 GLN A 77 -34.73 -132.48 REMARK 500 14 ASP A 85 -69.08 -93.22 REMARK 500 14 PRO A 99 1.28 -69.81 REMARK 500 14 TYR A 104 -73.26 -72.99 REMARK 500 15 ARG A 34 -69.05 -104.36 REMARK 500 15 LEU A 43 -39.38 -34.64 REMARK 500 15 LYS A 60 70.84 -107.95 REMARK 500 15 PRO A 61 93.04 -69.74 REMARK 500 15 PHE A 86 -30.02 -38.64 REMARK 500 15 CYS A 94 -19.38 -49.07 REMARK 500 15 TYR A 104 -70.73 -41.86 REMARK 500 16 LYS A 8 98.45 -40.88 REMARK 500 16 LYS A 9 179.51 -58.05 REMARK 500 16 SER A 10 54.82 74.85 REMARK 500 16 TYR A 12 93.45 -37.17 REMARK 500 16 SER A 47 156.00 -39.93 REMARK 500 16 ASN A 74 53.41 32.66 REMARK 500 16 TYR A 76 -178.43 -56.59 REMARK 500 16 GLN A 77 -36.71 -134.01 REMARK 500 16 PRO A 99 1.44 -69.69 REMARK 500 16 THR A 117 -72.67 -70.07 REMARK 500 17 SER A 5 143.14 -171.82 REMARK 500 17 SER A 6 164.26 -46.66 REMARK 500 17 LYS A 8 176.75 -57.44 REMARK 500 17 TYR A 30 140.21 -34.37 REMARK 500 17 GLU A 50 -73.53 -58.58 REMARK 500 17 THR A 57 -72.43 -55.45 REMARK 500 17 ASN A 74 45.97 34.62 REMARK 500 17 MET A 89 -38.29 -38.70 REMARK 500 17 CYS A 94 40.62 -85.74 REMARK 500 17 THR A 95 -69.85 -102.27 REMARK 500 17 PRO A 99 2.78 -69.79 REMARK 500 17 SER A 101 151.77 -47.01 REMARK 500 17 TYR A 104 -72.40 -78.28 REMARK 500 17 ARG A 118 154.86 -36.88 REMARK 500 17 ARG A 119 148.38 -35.07 REMARK 500 18 TYR A 30 141.10 -35.40 REMARK 500 18 ARG A 34 -71.61 -111.08 REMARK 500 18 LEU A 43 -70.13 -73.98 REMARK 500 18 ASP A 85 -70.03 -64.95 REMARK 500 18 PHE A 86 -39.17 -34.70 REMARK 500 18 SER A 101 175.74 -51.14 REMARK 500 18 ARG A 118 131.96 -39.83 REMARK 500 19 SER A 3 121.41 -37.46 REMARK 500 19 SER A 10 43.49 -93.49 REMARK 500 19 LEU A 43 -70.46 -94.33 REMARK 500 19 SER A 47 157.51 -38.88 REMARK 500 19 PRO A 52 2.66 -69.71 REMARK 500 19 PRO A 61 86.65 -69.76 REMARK 500 19 MET A 64 -18.03 -49.78 REMARK 500 19 LYS A 66 -33.76 -35.76 REMARK 500 19 GLU A 84 -27.99 -38.68 REMARK 500 19 PRO A 99 2.88 -69.75 REMARK 500 19 SER A 101 169.56 -47.45 REMARK 500 19 LEU A 115 -60.50 -92.69 REMARK 500 20 SER A 5 146.44 -35.67 REMARK 500 20 SER A 6 115.98 -38.73 REMARK 500 20 MET A 13 82.28 -62.42 REMARK 500 20 LYS A 19 -29.91 -38.06 REMARK 500 20 LEU A 20 -70.91 -73.10 REMARK 500 20 TYR A 30 134.45 -36.23 REMARK 500 20 LEU A 51 69.56 -110.85 REMARK 500 20 PHE A 86 -38.36 -38.39 REMARK 500 20 PRO A 99 2.89 -69.71 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008002603.2 RELATED DB: TARGETDB
DBREF 2YQD A 8 120 UNP Q8BSQ9 Q8BSQ9_MOUSE 650 762
SEQADV 2YQD GLY A 1 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD SER A 2 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD SER A 3 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD GLY A 4 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD SER A 5 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD SER A 6 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD GLY A 7 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD ASP A 53 UNP Q8BSQ9 GLU 695 ENGINEERED
SEQRES 1 A 120 GLY SER SER GLY SER SER GLY LYS LYS SER LYS TYR MET SEQRES 2 A 120 THR PRO MET GLN GLN LYS LEU ASN GLU VAL TYR GLU ALA SEQRES 3 A 120 VAL LYS ASN TYR THR ASP LYS ARG GLY ARG ARG LEU SER SEQRES 4 A 120 ALA ILE PHE LEU ARG LEU PRO SER ARG SER GLU LEU PRO SEQRES 5 A 120 ASP TYR TYR LEU THR ILE LYS LYS PRO MET ASP MET GLU SEQRES 6 A 120 LYS ILE ARG SER HIS MET MET ALA ASN LYS TYR GLN ASP SEQRES 7 A 120 ILE ASP SER MET VAL GLU ASP PHE VAL MET MET PHE ASN SEQRES 8 A 120 ASN ALA CYS THR TYR ASN GLU PRO GLU SER LEU ILE TYR SEQRES 9 A 120 LYS ASP ALA LEU VAL LEU HIS LYS VAL LEU LEU GLU THR SEQRES 10 A 120 ARG ARG ASP
HELIX 1 1 MET A 16 TYR A 30 1 15 HELIX 2 2 SER A 39 LEU A 43 5 5 HELIX 3 3 LEU A 51 ILE A 58 1 8 HELIX 4 4 ASP A 63 ALA A 73 1 11 HELIX 5 5 ASP A 78 ASN A 97 1 20 HELIX 6 6 SER A 101 ARG A 118 1 18
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000