10 20 30 40 50 60 70 80 2YCC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ELECTRON TRANSPORT (HEME PROTEIN) 29-JAN-91 2YCC
TITLE OXIDATION STATE-DEPENDENT CONFORMATIONAL CHANGES IN TITLE 2 CYTOCHROME C
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932
KEYWDS ELECTRON TRANSPORT (HEME PROTEIN)
EXPDTA X-RAY DIFFRACTION
AUTHOR A.M.BERGHUIS,G.D.BRAYER
REVDAT 2 24-FEB-09 2YCC 1 VERSN REVDAT 1 15-JUL-92 2YCC 0
JRNL AUTH A.M.BERGHUIS,G.D.BRAYER JRNL TITL OXIDATION STATE-DEPENDENT CONFORMATIONAL CHANGES JRNL TITL 2 IN CYTOCHROME C. JRNL REF J.MOL.BIOL. V. 223 959 1992 JRNL REFN ISSN 0022-2836 JRNL PMID 1311391 JRNL DOI 10.1016/0022-2836(92)90255-I
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.V.LOUIE,G.D.BRAYER REMARK 1 TITL HIGH-RESOLUTION REFINEMENT OF YEAST REMARK 1 TITL 2 ISO-1-CYTOCHROME C AND COMPARISONS WITH OTHER REMARK 1 TITL 3 EUKARYOTIC CYTOCHROMES C REMARK 1 REF J.MOL.BIOL. V. 214 527 1990 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.V.LOUIE,G.D.BRAYER REMARK 1 TITL A POLYPEPTIDE CHAIN-REFOLDING EVENT OCCURS IN THE REMARK 1 TITL 2 GLY82 VARIANT OF YEAST ISO-1-CYTOCHROME C REMARK 1 REF J.MOL.BIOL. V. 210 313 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.J.LEUNG,B.T.NALL,G.D.BRAYER REMARK 1 TITL CRYSTALLIZATION OF YEAST ISO-2-CYTOCHROME C USING REMARK 1 TITL 2 A NOVEL HAIR SEEDING TECHNIQUE REMARK 1 REF J.MOL.BIOL. V. 206 783 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH G.V.LOUIE,W.L.B.HUTCHEON,G.D.BRAYER REMARK 1 TITL YEAST ISO-1-CYTOCHROME C. A 2.8 ANGSTROM REMARK 1 TITL 2 RESOLUTION THREE-DIMENSIONAL STRUCTURE REMARK 1 TITL 3 DETERMINATION REMARK 1 REF J.MOL.BIOL. V. 199 295 1988 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH G.V.LOUIE,G.J.PIELAK,M.SMITH,G.D.BRAYER REMARK 1 TITL ROLE OF PHENYLALANINE-82 IN YEAST ISO-1-CYTOCHROME REMARK 1 TITL 2 C AND REMOTE CONFORMATIONAL CHANGES INDUCED BY A REMARK 1 TITL 3 SERINE RESIDUE AT THIS POSITION REMARK 1 REF BIOCHEMISTRY V. 27 7870 1988 REMARK 1 REFN ISSN 0006-2960
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.022 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.046 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YCC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.62000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 18.23500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 18.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.93000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 18.23500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 18.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.31000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 18.23500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 18.23500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.93000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 18.23500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 18.23500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.31000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.62000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 151 LIES ON A SPECIAL POSITION.
REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS PROTEIN HAS BEEN STABILIZED FOR ANALYSES BY THE REMARK 400 MUTATION OF CYSTEINE 102 TO A THREONINE RESIDUE. REMARK 400 REMARK 400 IN TURN T5 THE H-BOND IS MEDIATED THROUGH A WATER MOLECULE.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE LYS A 73 O HOH A 185 6455 2.05 REMARK 500 OD2 ASP A 60 OD2 ASP A 60 7555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 GLY A 29 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 ARG A 38 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ALA A 43 N - CA - CB ANGL. DEV. = 9.7 DEGREES REMARK 500 TYR A 46 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 48 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 ASP A 50 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 50 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 LEU A 58 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 ASP A 60 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 GLU A 88 OE1 - CD - OE2 ANGL. DEV. = 16.1 DEGREES REMARK 500 GLU A 88 CG - CD - OE2 ANGL. DEV. = -15.7 DEGREES REMARK 500 LEU A 94 CB - CG - CD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 TYR A 97 CB - CG - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR A 97 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 LEU A 98 CB - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 THR A 102 CA - CB - CG2 ANGL. DEV. = 12.5 DEGREES REMARK 500 GLU A 103 CG - CD - OE2 ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A -3 113.10 -164.58 REMARK 500 LYS A 27 -122.74 -128.58 REMARK 500 ASN A 70 88.24 -170.09 REMARK 500 LYS A 100 -75.24 -66.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 8 22.4 L L OUTSIDE RANGE REMARK 500 ARG A 13 24.1 L L OUTSIDE RANGE REMARK 500 ALA A 101 22.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 123 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A 157 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 302 DISTANCE = 6.04 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 104 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 MET A 80 SD 169.8 REMARK 620 N 1
REMARK 650 REMARK 650 HELIX REMARK 650 THE END OF THE 50 HELIX (RESIDUE 55) IS DISTORTED.
REMARK 700 REMARK 700 SHEET REMARK 700 RESIDUES IN SHEET S1 FORM A HIGHLY DISTORTED BETA TYPE REMARK 700 CONFORMATION.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 117 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 104
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YCC RELATED DB: PDB REMARK 900 REDUCED - WILD-TYPE REMARK 900 RELATED ID: 1CTY RELATED DB: PDB REMARK 900 OXIDIZED - Y67F, C102T MTUANT REMARK 900 RELATED ID: 1CTZ RELATED DB: PDB REMARK 900 REDUCED - Y67F, C102T MUTANT
DBREF 2YCC A -5 103 UNP P00044 CYC1_YEAST 1 108
SEQADV 2YCC THR A 102 UNP P00044 CYS 107 CONFLICT
SEQRES 1 A 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO M3L LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU
MODRES 2YCC M3L A 72 LYS N-TRIMETHYLLYSINE
HET M3L A 72 12 HET SO4 A 117 5 HET HEM A 104 43
HETNAM M3L N-TRIMETHYLLYSINE HETNAM SO4 SULFATE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE
HETSYN HEM HEME
FORMUL 1 M3L C9 H21 N2 O2 1+ FORMUL 2 SO4 O4 S 2- FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 HOH *61(H2 O)
HELIX 1 NT SER A 2 CYS A 14 1 13 HELIX 2 50 THR A 49 LYS A 55 1RESIDUE 55 DISTORTED 7 HELIX 3 60 ASP A 60 ASN A 70 1 11 HELIX 4 70 ASN A 70 ILE A 75 1 6 HELIX 5 CT LYS A 87 THR A 102 1 16
SHEET 1 S1 2 GLY A 37 SER A 40 0 SHEET 2 S1 2 VAL A 57 TRP A 59 -1 O VAL A 57 N SER A 40
LINK SG CYS A 14 CAB HEM A 104 1555 1555 1.81 LINK SG CYS A 17 CAC HEM A 104 1555 1555 1.84 LINK NE2 HIS A 18 FE HEM A 104 1555 1555 2.01 LINK C PRO A 71 N M3L A 72 1555 1555 1.33 LINK C M3L A 72 N LYS A 73 1555 1555 1.32 LINK FE HEM A 104 SD MET A 80 1555 1555 2.43
SITE 1 AC1 5 SER A 2 ALA A 3 LYS A 4 SER A 47 SITE 2 AC1 5 LYS A 73 SITE 1 AC2 29 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC2 29 GLY A 23 VAL A 28 GLY A 29 LEU A 32 SITE 3 AC2 29 ILE A 35 SER A 40 GLY A 41 TYR A 46 SITE 4 AC2 29 TYR A 48 THR A 49 ASN A 52 TRP A 59 SITE 5 AC2 29 MET A 64 TYR A 67 THR A 78 LYS A 79 SITE 6 AC2 29 MET A 80 ALA A 81 PHE A 82 LEU A 98 SITE 7 AC2 29 HOH A 121 HOH A 122 HOH A 126 HOH A 166 SITE 8 AC2 29 HOH A 168
CRYST1 36.470 36.470 137.240 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.027420 0.000000 0.000000 0.00000
SCALE2 0.000000 0.027420 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007287 0.00000