10 20 30 40 50 60 70 80 2XD5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 29-APR-10 2XD5
TITLE STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM AND THE TITLE 2 ROLE OF STREPTOCOCCUS PNEUMONIAE PBP1B
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 1B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 323-791; COMPND 5 EC: 2.3.2.-, 2.4.1.129; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 171101; SOURCE 4 STRAIN: R6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T1
KEYWDS CELL WALL, PEPTIDOGLYCAN SYNTHESIS, TRANSFERASE, KEYWDS 2 MULTIFUNCTIONAL ENZYME, PSEUDO-SUBSTRATE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.MACHEBOEUF,D.LEMAIRE,M.JAMIN,O.DIDEBERG,A.DESSEN
REVDAT 1 26-MAY-10 2XD5 0
SPRSDE 26-MAY-10 2XD5 2JCI
JRNL AUTH P.MACHEBOEUF,D.LEMAIRE,M.JAMIN,O.DIDEBERG,A.DESSEN JRNL TITL STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM JRNL TITL 2 AND THE ROLE OF STREPTOCOCCUS PNEUMONIAE PBP1B JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.MACHEBOEUF,D.LEMAIRE,N.TELLER,A.D.S.MARTINS, REMARK 1 AUTH 2 A.LUXEN,O.DIDEBERG,M.JAMIN,A.DESSEN REMARK 1 TITL TRAPPING OF AN ACYL-ENZYME INTERMEDIATE IN A REMARK 1 TITL 2 PENICILLIN-BINDING PROTEIN (PBP)-CATALYZED REMARK 1 TITL 3 REACTION. REMARK 1 REF J.MOL.BIOL. V. 376 405 2008 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 18155726 REMARK 1 DOI 10.1016/J.JMB.2007.10.066
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 FREE R VALUE TEST SET COUNT : 2481 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3459 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7267 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.305 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.420 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7436 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10106 ; 2.182 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 944 ; 8.006 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 344 ;38.870 ;25.291 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1197 ;18.701 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1108 ; 0.220 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5715 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3486 ; 0.255 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5105 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 354 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.235 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4796 ; 1.123 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7471 ; 1.879 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3102 ; 2.937 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2635 ; 4.466 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS.
REMARK 4 REMARK 4 2XD5 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-10. REMARK 100 THE PDBE ID CODE IS EBI-43792.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49863 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.50 REMARK 200 RESOLUTION RANGE LOW (A) : 45.91 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.7 REMARK 200 R MERGE (I) : 0.22 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.46 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4 REMARK 200 R MERGE FOR SHELL (I) : 0.05 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2BG1 REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES, 3.2 M NACL, 0.8 M REMARK 280 AMMONIUM SULFATE
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.40000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 336 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 686 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 687 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 336 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 686 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 687 TO GLN
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 101 REMARK 465 ILE A 102 REMARK 465 SER A 103 REMARK 465 SER A 104 REMARK 465 GLU A 120 REMARK 465 SER A 121 REMARK 465 ASP A 122 REMARK 465 MET A 123 REMARK 465 LEU A 124 REMARK 465 ARG A 125 REMARK 465 GLN A 323 REMARK 465 ASP A 324 REMARK 465 PHE A 325 REMARK 465 LEU A 326 REMARK 465 PRO A 327 REMARK 465 SER A 328 REMARK 465 GLY A 329 REMARK 465 THR A 330 REMARK 465 VAL A 331 REMARK 465 THR A 332 REMARK 465 GLY A 333 REMARK 465 ILE A 334 REMARK 465 SER A 335 REMARK 465 GLN A 336 REMARK 465 PRO A 791 REMARK 465 ASP B 101 REMARK 465 ILE B 102 REMARK 465 SER B 103 REMARK 465 SER B 104 REMARK 465 ARG B 125 REMARK 465 GLN B 323 REMARK 465 ASP B 324 REMARK 465 PHE B 325 REMARK 465 LEU B 326 REMARK 465 PRO B 327 REMARK 465 SER B 328 REMARK 465 GLY B 329 REMARK 465 THR B 330 REMARK 465 VAL B 331 REMARK 465 THR B 332 REMARK 465 GLY B 333 REMARK 465 ILE B 334 REMARK 465 SER B 335 REMARK 465 GLN B 336 REMARK 465 LYS B 364 REMARK 465 GLU B 365 REMARK 465 LEU B 366 REMARK 465 LYS B 367 REMARK 465 ASN B 368 REMARK 465 LEU B 790 REMARK 465 PRO B 791
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 119 CG1 CG2 CD1 REMARK 470 SER A 362 CB OG REMARK 470 LYS B 603 CG CD CE NZ REMARK 470 LYS B 738 CG CD CE NZ REMARK 470 LYS B 760 CG CD CE NZ
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 389 NZ REMARK 480 LYS A 397 CE NZ REMARK 480 GLU A 742 OE2 REMARK 480 GLU B 445 OE1 REMARK 480 LEU B 729 CG
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 346 CB GLU A 346 CG 0.199 REMARK 500 GLU A 346 CG GLU A 346 CD 0.136 REMARK 500 LYS A 397 CD LYS A 397 CE -0.368 REMARK 500 SER A 460 C SER A 460 O 0.202 REMARK 500 GLU A 742 CD GLU A 742 OE2 0.422 REMARK 500 GLU B 346 CB GLU B 346 CG 0.135 REMARK 500 GLU B 445 CD GLU B 445 OE1 0.692 REMARK 500 SER B 460 C SER B 460 O 0.180 REMARK 500 LEU B 729 CB LEU B 729 CG 0.294 REMARK 500 LEU B 729 CG LEU B 729 CD2 -0.356 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 453 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 456 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 SER A 460 N - CA - CB ANGL. DEV. = 10.5 DEGREES REMARK 500 SER A 460 O - C - N ANGL. DEV. = -16.0 DEGREES REMARK 500 THR A 461 C - N - CA ANGL. DEV. = 21.4 DEGREES REMARK 500 GLU A 742 CG - CD - OE2 ANGL. DEV. = -36.4 DEGREES REMARK 500 GLN B 372 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 GLU B 445 OE1 - CD - OE2 ANGL. DEV. = -120.8 DEGREES REMARK 500 SER B 460 CB - CA - C ANGL. DEV. = 19.0 DEGREES REMARK 500 SER B 460 CA - C - N ANGL. DEV. = 20.7 DEGREES REMARK 500 SER B 460 O - C - N ANGL. DEV. = -18.7 DEGREES REMARK 500 ASP B 647 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU B 729 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 LEU B 729 CB - CG - CD2 ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 110 170.44 -52.34 REMARK 500 SER A 362 111.70 61.03 REMARK 500 ALA A 363 -111.21 81.90 REMARK 500 ASP A 415 14.47 -144.82 REMARK 500 ASN A 442 99.05 -173.46 REMARK 500 ALA A 459 -137.59 51.53 REMARK 500 THR A 461 -21.27 -29.93 REMARK 500 ALA A 467 -78.58 -105.56 REMARK 500 ALA A 499 -118.62 54.51 REMARK 500 THR A 504 -110.94 -124.72 REMARK 500 ASN A 576 33.47 -88.03 REMARK 500 HIS A 584 144.29 -177.59 REMARK 500 ALA A 592 -43.07 -27.98 REMARK 500 ASN A 640 92.06 -163.83 REMARK 500 ASN A 656 136.09 -39.78 REMARK 500 GLN A 657 -3.42 74.16 REMARK 500 ASN A 681 4.23 83.20 REMARK 500 SER A 691 -63.22 -101.88 REMARK 500 GLU A 742 49.43 37.12 REMARK 500 ASN A 759 -167.40 -108.99 REMARK 500 GLU B 120 -88.65 -118.72 REMARK 500 SER B 121 157.50 126.41 REMARK 500 SER B 362 41.38 -168.65 REMARK 500 GLN B 372 -138.97 95.73 REMARK 500 GLN B 372 -142.14 95.73 REMARK 500 LYS B 373 -14.49 73.05 REMARK 500 ASN B 442 95.35 175.15 REMARK 500 ALA B 459 -133.83 48.06 REMARK 500 ALA B 467 -73.26 -119.80 REMARK 500 ALA B 499 -133.06 51.25 REMARK 500 THR B 504 -112.77 -129.03 REMARK 500 ASN B 576 38.88 -85.56 REMARK 500 ARG B 627 13.49 57.33 REMARK 500 ASN B 640 80.14 -167.97 REMARK 500 SER B 708 81.16 -153.28 REMARK 500 ASN B 759 -166.33 -108.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 362 ALA A 363 148.53 REMARK 500 VAL B 361 SER B 362 145.32 REMARK 500 GLN B 372 LYS B 373 57.90 REMARK 500 SER B 666 THR B 667 148.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 742 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 460 21.98 REMARK 500 SER B 460 11.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 105 24.5 L L OUTSIDE RANGE REMARK 500 GLU A 107 24.6 L L OUTSIDE RANGE REMARK 500 SER A 460 -2.1 L D EXPECTING SP3 REMARK 500 GLN B 372 9.6 L L EXPECTING SP3 REMARK 500 SER B 460 -8.2 L D EXPECTING SP3 REMARK 500 THR B 462 18.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 S2D A 1792
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1791 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S2D A1792 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1793 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1794 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1790 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S2D B1791
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UWX RELATED DB: PDB REMARK 900 ACTIVE SITE RESTRUCTURING REGULATES LIGAND REMARK 900 RECOGNITION IN CLASS A PENICILLIN-BINDING REMARK 900 PROTEINS REMARK 900 RELATED ID: 2XD1 RELATED DB: PDB REMARK 900 ACTIVE SITE RESTRUCTURING REGULATES LIGAND REMARK 900 RECOGNITION IN CLASS A PENICILLIN-BINDING REMARK 900 PROTEINS REMARK 900 RELATED ID: 2JCH RELATED DB: PDB REMARK 900 STRUCTURAL AND MECHANISTIC BASIS OF PENICILLIN REMARK 900 BINDING PROTEIN INHIBITION BY LACTIVICINS
DBREF 2XD5 A 323 791 UNP Q7CRA4 Q7CRA4_STRR6 323 791 DBREF 2XD5 B 323 791 UNP Q7CRA4 Q7CRA4_STRR6 323 791
SEQADV 2XD5 ASP A 101 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ILE A 102 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER A 103 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER A 104 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ILE A 105 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER A 106 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 GLU A 107 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ILE A 108 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 THR A 109 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 TYR A 110 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER A 111 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ASP A 112 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 GLY A 113 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 THR A 114 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 VAL A 115 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ILE A 116 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ALA A 117 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER A 118 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ILE A 119 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 GLU A 120 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER A 121 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ASP A 122 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 MET A 123 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 LEU A 124 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ARG A 125 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 GLN A 336 UNP Q7CRA4 ARG 336 ENGINEERED MUTATION SEQADV 2XD5 GLN A 686 UNP Q7CRA4 ARG 686 ENGINEERED MUTATION SEQADV 2XD5 GLN A 687 UNP Q7CRA4 ARG 687 ENGINEERED MUTATION SEQADV 2XD5 ASP B 101 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ILE B 102 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER B 103 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER B 104 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ILE B 105 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER B 106 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 GLU B 107 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ILE B 108 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 THR B 109 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 TYR B 110 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER B 111 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ASP B 112 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 GLY B 113 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 THR B 114 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 VAL B 115 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ILE B 116 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ALA B 117 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER B 118 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ILE B 119 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 GLU B 120 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 SER B 121 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ASP B 122 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 MET B 123 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 LEU B 124 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 ARG B 125 UNP Q7CRA4 EXPRESSION TAG SEQADV 2XD5 GLN B 336 UNP Q7CRA4 ARG 336 ENGINEERED MUTATION SEQADV 2XD5 GLN B 686 UNP Q7CRA4 ARG 686 ENGINEERED MUTATION SEQADV 2XD5 GLN B 687 UNP Q7CRA4 ARG 687 ENGINEERED MUTATION
SEQRES 1 A 494 ASP ILE SER SER ILE SER GLU ILE THR TYR SER ASP GLY SEQRES 2 A 494 THR VAL ILE ALA SER ILE GLU SER ASP MET LEU ARG GLN SEQRES 3 A 494 ASP PHE LEU PRO SER GLY THR VAL THR GLY ILE SER GLN SEQRES 4 A 494 ASP TYR LEU TYR PHE THR THR LEU ALA GLU ALA GLN GLU SEQRES 5 A 494 ARG MET TYR ASP TYR LEU ALA GLN ARG ASP ASN VAL SER SEQRES 6 A 494 ALA LYS GLU LEU LYS ASN GLU ALA THR GLN LYS PHE TYR SEQRES 7 A 494 ARG ASP LEU ALA ALA LYS GLU ILE GLU ASN GLY GLY TYR SEQRES 8 A 494 LYS ILE THR THR THR ILE ASP GLN LYS ILE HIS SER ALA SEQRES 9 A 494 MET GLN SER ALA VAL ALA ASP TYR GLY TYR LEU LEU ASP SEQRES 10 A 494 ASP GLY THR GLY ARG VAL GLU VAL GLY ASN VAL LEU MET SEQRES 11 A 494 ASP ASN GLN THR GLY ALA ILE LEU GLY PHE VAL GLY GLY SEQRES 12 A 494 ARG ASN TYR GLN GLU ASN GLN ASN ASN HIS ALA PHE ASP SEQRES 13 A 494 THR LYS ARG SER PRO ALA SER THR THR LYS PRO LEU LEU SEQRES 14 A 494 ALA TYR GLY ILE ALA ILE ASP GLN GLY LEU MET GLY SER SEQRES 15 A 494 GLU THR ILE LEU SER ASN TYR PRO THR ASN PHE ALA ASN SEQRES 16 A 494 GLY ASN PRO ILE MET TYR ALA ASN SER LYS GLY THR GLY SEQRES 17 A 494 MET MET THR LEU GLY GLU ALA LEU ASN TYR SER TRP ASN SEQRES 18 A 494 ILE PRO ALA TYR TRP THR TYR ARG MET LEU ARG GLU ASN SEQRES 19 A 494 GLY VAL ASP VAL LYS GLY TYR MET GLU LYS MET GLY TYR SEQRES 20 A 494 GLU ILE PRO GLU TYR GLY ILE GLU SER LEU PRO MET GLY SEQRES 21 A 494 GLY GLY ILE GLU VAL THR VAL ALA GLN HIS THR ASN GLY SEQRES 22 A 494 TYR GLN THR LEU ALA ASN ASN GLY VAL TYR HIS GLN LYS SEQRES 23 A 494 HIS VAL ILE SER LYS ILE GLU ALA ALA ASP GLY ARG VAL SEQRES 24 A 494 VAL TYR GLU TYR GLN ASP LYS PRO VAL GLN VAL TYR SER SEQRES 25 A 494 LYS ALA THR ALA THR ILE MET GLN GLY LEU LEU ARG GLU SEQRES 26 A 494 VAL LEU SER SER ARG VAL THR THR THR PHE LYS SER ASN SEQRES 27 A 494 LEU THR SER LEU ASN PRO THR LEU ALA ASN ALA ASP TRP SEQRES 28 A 494 ILE GLY LYS THR GLY THR THR ASN GLN ASP GLU ASN MET SEQRES 29 A 494 TRP LEU MET LEU SER THR PRO ARG LEU THR LEU GLY GLY SEQRES 30 A 494 TRP ILE GLY HIS ASP ASP ASN HIS SER LEU SER GLN GLN SEQRES 31 A 494 ALA GLY TYR SER ASN ASN SER ASN TYR MET ALA HIS LEU SEQRES 32 A 494 VAL ASN ALA ILE GLN GLN ALA SER PRO SER ILE TRP GLY SEQRES 33 A 494 ASN GLU ARG PHE ALA LEU ASP PRO SER VAL VAL LYS SER SEQRES 34 A 494 GLU VAL LEU LYS SER THR GLY GLN LYS PRO GLY LYS VAL SEQRES 35 A 494 SER VAL GLU GLY LYS GLU VAL GLU VAL THR GLY SER THR SEQRES 36 A 494 VAL THR SER TYR TRP ALA ASN LYS SER GLY ALA PRO ALA SEQRES 37 A 494 THR SER TYR ARG PHE ALA ILE GLY GLY SER ASP ALA ASP SEQRES 38 A 494 TYR GLN ASN ALA TRP SER SER ILE VAL GLY SER LEU PRO SEQRES 1 B 494 ASP ILE SER SER ILE SER GLU ILE THR TYR SER ASP GLY SEQRES 2 B 494 THR VAL ILE ALA SER ILE GLU SER ASP MET LEU ARG GLN SEQRES 3 B 494 ASP PHE LEU PRO SER GLY THR VAL THR GLY ILE SER GLN SEQRES 4 B 494 ASP TYR LEU TYR PHE THR THR LEU ALA GLU ALA GLN GLU SEQRES 5 B 494 ARG MET TYR ASP TYR LEU ALA GLN ARG ASP ASN VAL SER SEQRES 6 B 494 ALA LYS GLU LEU LYS ASN GLU ALA THR GLN LYS PHE TYR SEQRES 7 B 494 ARG ASP LEU ALA ALA LYS GLU ILE GLU ASN GLY GLY TYR SEQRES 8 B 494 LYS ILE THR THR THR ILE ASP GLN LYS ILE HIS SER ALA SEQRES 9 B 494 MET GLN SER ALA VAL ALA ASP TYR GLY TYR LEU LEU ASP SEQRES 10 B 494 ASP GLY THR GLY ARG VAL GLU VAL GLY ASN VAL LEU MET SEQRES 11 B 494 ASP ASN GLN THR GLY ALA ILE LEU GLY PHE VAL GLY GLY SEQRES 12 B 494 ARG ASN TYR GLN GLU ASN GLN ASN ASN HIS ALA PHE ASP SEQRES 13 B 494 THR LYS ARG SER PRO ALA SER THR THR LYS PRO LEU LEU SEQRES 14 B 494 ALA TYR GLY ILE ALA ILE ASP GLN GLY LEU MET GLY SER SEQRES 15 B 494 GLU THR ILE LEU SER ASN TYR PRO THR ASN PHE ALA ASN SEQRES 16 B 494 GLY ASN PRO ILE MET TYR ALA ASN SER LYS GLY THR GLY SEQRES 17 B 494 MET MET THR LEU GLY GLU ALA LEU ASN TYR SER TRP ASN SEQRES 18 B 494 ILE PRO ALA TYR TRP THR TYR ARG MET LEU ARG GLU ASN SEQRES 19 B 494 GLY VAL ASP VAL LYS GLY TYR MET GLU LYS MET GLY TYR SEQRES 20 B 494 GLU ILE PRO GLU TYR GLY ILE GLU SER LEU PRO MET GLY SEQRES 21 B 494 GLY GLY ILE GLU VAL THR VAL ALA GLN HIS THR ASN GLY SEQRES 22 B 494 TYR GLN THR LEU ALA ASN ASN GLY VAL TYR HIS GLN LYS SEQRES 23 B 494 HIS VAL ILE SER LYS ILE GLU ALA ALA ASP GLY ARG VAL SEQRES 24 B 494 VAL TYR GLU TYR GLN ASP LYS PRO VAL GLN VAL TYR SER SEQRES 25 B 494 LYS ALA THR ALA THR ILE MET GLN GLY LEU LEU ARG GLU SEQRES 26 B 494 VAL LEU SER SER ARG VAL THR THR THR PHE LYS SER ASN SEQRES 27 B 494 LEU THR SER LEU ASN PRO THR LEU ALA ASN ALA ASP TRP SEQRES 28 B 494 ILE GLY LYS THR GLY THR THR ASN GLN ASP GLU ASN MET SEQRES 29 B 494 TRP LEU MET LEU SER THR PRO ARG LEU THR LEU GLY GLY SEQRES 30 B 494 TRP ILE GLY HIS ASP ASP ASN HIS SER LEU SER GLN GLN SEQRES 31 B 494 ALA GLY TYR SER ASN ASN SER ASN TYR MET ALA HIS LEU SEQRES 32 B 494 VAL ASN ALA ILE GLN GLN ALA SER PRO SER ILE TRP GLY SEQRES 33 B 494 ASN GLU ARG PHE ALA LEU ASP PRO SER VAL VAL LYS SER SEQRES 34 B 494 GLU VAL LEU LYS SER THR GLY GLN LYS PRO GLY LYS VAL SEQRES 35 B 494 SER VAL GLU GLY LYS GLU VAL GLU VAL THR GLY SER THR SEQRES 36 B 494 VAL THR SER TYR TRP ALA ASN LYS SER GLY ALA PRO ALA SEQRES 37 B 494 THR SER TYR ARG PHE ALA ILE GLY GLY SER ASP ALA ASP SEQRES 38 B 494 TYR GLN ASN ALA TRP SER SER ILE VAL GLY SER LEU PRO
HET SO4 A1791 5 HET S2D A1792 5 HET CL A1793 1 HET CL A1794 1 HET SO4 B1790 5 HET S2D B1791 13
HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM S2D N-BENZOYL-D-ALANINE
FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 CL 2(CL 1-) FORMUL 5 S2D 2(C10 H11 N O3) FORMUL 6 HOH *250(H2 O)
HELIX 1 1 ASP A 337 ASP A 359 1 23 HELIX 2 2 ALA A 363 ASN A 368 1 6 HELIX 3 3 ASN A 368 GLY A 386 1 19 HELIX 4 4 ASP A 395 GLY A 410 1 16 HELIX 5 5 TYR A 411 ASP A 414 5 4 HELIX 6 6 PRO A 458 THR A 461 5 4 HELIX 7 7 THR A 462 ALA A 467 1 6 HELIX 8 8 ALA A 467 GLN A 474 1 8 HELIX 9 9 LEU A 509 SER A 516 1 8 HELIX 10 10 ASN A 518 ASN A 531 1 14 HELIX 11 11 ASP A 534 MET A 542 1 9 HELIX 12 12 SER A 553 GLY A 557 5 5 HELIX 13 13 THR A 563 ASN A 576 1 14 HELIX 14 14 SER A 609 SER A 626 1 18 HELIX 15 15 THR A 631 ASN A 640 1 10 HELIX 16 16 ASN A 640 ASN A 645 1 6 HELIX 17 17 ASN A 656 ASP A 658 5 3 HELIX 18 18 SER A 691 SER A 708 1 18 HELIX 19 19 SER A 775 GLY A 788 1 14 HELIX 20 20 ASP B 337 ASP B 359 1 23 HELIX 21 21 PHE B 374 GLY B 386 1 13 HELIX 22 22 ASP B 395 GLY B 410 1 16 HELIX 23 23 TYR B 411 ASP B 414 5 4 HELIX 24 24 PRO B 458 SER B 460 5 3 HELIX 25 25 THR B 461 ALA B 467 1 7 HELIX 26 26 ALA B 467 GLN B 474 1 8 HELIX 27 27 LEU B 509 SER B 516 1 8 HELIX 28 28 ASN B 518 ASN B 531 1 14 HELIX 29 29 ASP B 534 MET B 542 1 9 HELIX 30 30 SER B 553 GLY B 557 5 5 HELIX 31 31 THR B 563 ASN B 576 1 14 HELIX 32 32 SER B 609 SER B 626 1 18 HELIX 33 33 THR B 631 ASN B 640 1 10 HELIX 34 34 ASN B 640 ASN B 645 1 6 HELIX 35 35 SER B 691 SER B 708 1 18 HELIX 36 36 SER B 775 GLY B 788 1 14
SHEET 1 AA 5 VAL A 115 SER A 118 0 SHEET 2 AA 5 GLU A 107 THR A 109 -1 O ILE A 108 N ILE A 116 SHEET 3 AA 5 LYS A 389 THR A 392 1 O ILE A 390 N THR A 109 SHEET 4 AA 5 ILE A 586 GLU A 590 -1 N SER A 587 O THR A 391 SHEET 5 AA 5 VAL A 596 GLU A 599 -1 N VAL A 597 O ILE A 589 SHEET 1 AB 5 ILE A 434 VAL A 438 0 SHEET 2 AB 5 GLU A 421 ASP A 428 -1 O ASN A 424 N VAL A 438 SHEET 3 AB 5 LEU A 670 GLY A 677 -1 O THR A 671 N MET A 427 SHEET 4 AB 5 ASN A 660 SER A 666 -1 O MET A 661 N ILE A 676 SHEET 5 AB 5 ILE A 649 THR A 654 -1 O ILE A 649 N SER A 666 SHEET 1 AC 2 ILE A 482 SER A 484 0 SHEET 2 AC 2 MET A 506 THR A 508 -1 O MET A 507 N LEU A 483 SHEET 1 AD 2 VAL A 579 TYR A 580 0 SHEET 2 AD 2 VAL A 605 GLN A 606 -1 O VAL A 605 N TYR A 580 SHEET 1 AE 2 VAL A 724 LEU A 729 0 SHEET 2 AE 2 THR A 752 TRP A 757 -1 O VAL A 753 N VAL A 728 SHEET 1 AF 2 GLY A 737 SER A 740 0 SHEET 2 AF 2 GLU A 745 VAL A 748 -1 O VAL A 746 N VAL A 739 SHEET 1 BA 5 VAL B 115 ILE B 119 0 SHEET 2 BA 5 SER B 106 THR B 109 -1 O SER B 106 N ILE B 119 SHEET 3 BA 5 TYR B 388 THR B 392 1 O TYR B 388 N GLU B 107 SHEET 4 BA 5 ILE B 586 ALA B 591 -1 N SER B 587 O THR B 391 SHEET 5 BA 5 VAL B 596 GLU B 599 -1 N VAL B 597 O ILE B 589 SHEET 1 BB 5 ILE B 434 VAL B 438 0 SHEET 2 BB 5 GLU B 421 ASP B 428 -1 O ASN B 424 N VAL B 438 SHEET 3 BB 5 LEU B 670 GLY B 677 -1 O THR B 671 N MET B 427 SHEET 4 BB 5 MET B 661 SER B 666 -1 O MET B 661 N ILE B 676 SHEET 5 BB 5 ILE B 649 THR B 654 -1 O ILE B 649 N SER B 666 SHEET 1 BC 2 ILE B 482 SER B 484 0 SHEET 2 BC 2 MET B 506 THR B 508 -1 O MET B 507 N LEU B 483 SHEET 1 BD 2 VAL B 579 TYR B 580 0 SHEET 2 BD 2 VAL B 605 GLN B 606 -1 O VAL B 605 N TYR B 580 SHEET 1 BE 2 VAL B 724 LEU B 729 0 SHEET 2 BE 2 THR B 752 TRP B 757 -1 O VAL B 753 N VAL B 728 SHEET 1 BF 2 GLY B 737 SER B 740 0 SHEET 2 BF 2 GLU B 745 VAL B 748 -1 O VAL B 746 N VAL B 739
LINK OG SER A 460 C1 S2D A1792 1555 1555 1.69 LINK OG SER B 460 C1 S2D B1791 1555 1555 1.47
CISPEP 1 THR B 371 GLN B 372 0 12.99
SITE 1 AC1 6 THR A 563 GLN A 566 LYS A 583 HOH A2054 SITE 2 AC1 6 HOH A2115 HOH A2116 SITE 1 AC2 5 ALA A 459 SER A 460 SER A 516 GLY A 653 SITE 2 AC2 5 THR A 654 SITE 1 AC3 2 SER A 634 SER B 634 SITE 1 AC4 2 ARG A 627 LYS A 633 SITE 1 AC5 6 THR B 563 LYS B 583 HOH B2065 HOH B2132 SITE 2 AC5 6 HOH B2133 HOH B2134 SITE 1 AC6 6 ALA B 459 SER B 460 SER B 516 THR B 652 SITE 2 AC6 6 GLY B 653 THR B 654
CRYST1 96.800 101.100 145.000 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010331 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009891 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006897 0.00000
MTRIX1 1 -0.999000 0.034000 0.001000 0.46948 1
MTRIX2 1 -0.032000 -0.939000 -0.342000 0.72849 1
MTRIX3 1 -0.011000 -0.342000 0.940000 0.09179 1