10 20 30 40 50 60 70 80 2X8N - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS 10-MAR-10 2X8N
TITLE SOLUTION NMR STRUCTURE OF UNCHARACTERIZED PROTEIN CV0863 TITLE 2 FROM CHROMOBACTERIUM VIOLACEUM. NORTHEAST STRUCTURAL TITLE 3 GENOMICS TARGET (NESG) TARGET CVT3. OCSP TITLE 4 TARGET CV0863.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CV0863; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM ATCC 12472; SOURCE 3 ORGANISM_TAXID: 243365; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P15TV LIC
KEYWDS NON-UNIFORM SAMPLING, MULTIDIMENSIONAL DECOMPOSITION, KEYWDS 2 ABACUS, FRAGMENT MONTE CARLO, STRUCTURAL GENOMICS, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, ONTARIO KEYWDS 4 CENTRE FOR STRUCTURAL PROTEOMICS, OCSP
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.GUTMANAS,C.FARES,A.YEE,A.LEMAK,A.SEMESI,C.H.ARROWSMITH, AUTHOR 2 ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS (OCSP) ,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 4 06-MAY-15 2X8N 1 AUTHOR REMARK REVDAT 3 12-OCT-11 2X8N 1 REMARK ATOM REVDAT 2 12-MAY-10 2X8N 1 TITLE KEYWDS AUTHOR REVDAT 1 28-APR-10 2X8N 0
JRNL AUTH A.GUTMANAS,C.FARES,A.YEE,A.LEMAK,C.H.ARROWSMITH JRNL TITL SOLUTION NMR STRUCTURE OF UNCHARACTERIZED PROTEIN JRNL TITL 2 CV0863 FROM CHROMOBACTERIUM VIOLACEUM JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES, REMARK 1 AUTH 2 M.SUNNERHAGEN,C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND REMARK 1 TITL 2 PROTEIN STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS,CLORE,GROS,NILGES,READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINED MOLECULAR DYNAMICS
REMARK 4 REMARK 4 2X8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-10. REMARK 100 THE PDBE ID CODE IS EBI-43199.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 300MM REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O/10% D2O, 10MM TRIS,300 REMARK 210 MM NACL,10 MM ZNSO4,10 MM DTT, REMARK 210 1 MM BENZAMIDINE,0.01% NAN3,1X REMARK 210 ROCHE INHIBITOR COCKTAIL, 100% REMARK 210 13C, 100% 15N-CV0863 1MM; REMARK 210 90% H2O/10% D2O, 10MM TRIS,300 REMARK 210 MM NACL,10 MM ZNSO4,10 MM DTT, REMARK 210 1 MM BENZAMIDINE,0.01% NAN3,1X REMARK 210 ROCHE INHIBITOR COCKTAIL, 7% 13C, REMARK 210 100% 15N-CV0863 1MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 13C-NOESY-HSQC-ALIPHATIC; REMARK 210 13C-HSQC-CT-ALIPHATIC; REMARK 210 13C-HSQC-ALIPHATIC; REMARK 210 13C-HSQC-AROMATIC; 15N-HSQ; REMARK 210 13C-NOESY-HSQC-AROMATIC; REMARK 210 15N-NOESY-HSQC; H(C)CH-TOCSY- REMARK 210 ALIPHATIC; (H)CCH-TOCSY- REMARK 210 ALIPHATIC; H(C)CH-TOCSY-AROMATIC; REMARK 210 (H)CCH-TOCSY-AROMATIC; T1;T1RHO; REMARK 210 HNCO;HNCA;CBCA(CO)NH; REMARK 210 HBHA(CBCACO)NH;H(CCCO)NH-TOCSY; REMARK 210 13C-HSQC-CT-ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, MDDNMR, MDDGUI, REMARK 210 ABACUS, CCPN ANAYSIS, CYANA, REMARK 210 CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL 3D NMR SPECTRA WERE COLLECTED WITH NON-UNIFORM REMARK 210 SAMPLING (WWW.NMR2.BUFFALO.EDU/NESG.WIKI/SETTING_UP_NON- REMARK 210 UNIFORMLY_SAMPLED_SPECTRA) AND PROCESSED WITH MDDGUI AND REMARK 210 MDDNMR SOFTWARE (WWW.NMR2.BUFFALO.EDU/NESG.WIKI/ PROCESSING_ REMARK 210 NON-UNIFORMLY_SAMPLED_SPECTRA_WITH_MULTIDIMENSIONAL_ REMARK 210 DECOMPOSITION
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLN A -1 REMARK 465 GLY A 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 5 114.04 -163.10 REMARK 500 1 ASN A 6 -55.45 76.67 REMARK 500 1 GLU A 9 26.73 44.94 REMARK 500 1 TYR A 22 -92.10 -94.48 REMARK 500 1 LEU A 75 -72.38 -73.08 REMARK 500 1 ALA A 108 84.44 -63.56 REMARK 500 2 TYR A 22 -82.85 -109.88 REMARK 500 2 LEU A 75 -72.21 -78.85 REMARK 500 3 SER A 4 93.28 -174.45 REMARK 500 3 ALA A 5 6.65 -174.25 REMARK 500 3 GLU A 9 21.62 47.37 REMARK 500 3 GLU A 21 -62.00 -93.33 REMARK 500 3 TYR A 22 -74.22 -88.58 REMARK 500 3 SER A 23 163.64 179.13 REMARK 500 3 TYR A 58 97.99 -64.40 REMARK 500 3 LEU A 75 -78.09 -69.47 REMARK 500 4 TYR A 22 -84.09 -85.25 REMARK 500 4 LEU A 75 -73.25 -81.23 REMARK 500 5 TYR A 22 -82.82 -89.55 REMARK 500 5 GLN A 55 -71.29 -50.06 REMARK 500 5 LEU A 75 -77.03 -67.28 REMARK 500 6 SER A 23 176.70 166.53 REMARK 500 6 GLN A 55 -70.18 -55.47 REMARK 500 6 LEU A 75 -76.61 -50.13 REMARK 500 6 ARG A 95 96.27 -69.68 REMARK 500 6 ALA A 108 85.84 -68.90 REMARK 500 7 GLU A 21 -73.51 -77.40 REMARK 500 7 TYR A 22 -80.90 -80.62 REMARK 500 7 SER A 71 152.83 -49.53 REMARK 500 7 LEU A 75 -74.71 -61.50 REMARK 500 8 TYR A 22 -81.50 -84.57 REMARK 500 8 LEU A 75 -80.30 -72.14 REMARK 500 9 TYR A 22 -86.30 -105.23 REMARK 500 9 TYR A 58 90.79 -65.78 REMARK 500 9 LEU A 75 -74.20 -79.86 REMARK 500 9 ALA A 108 89.51 -66.48 REMARK 500 10 TYR A 22 -88.03 -85.79 REMARK 500 10 TYR A 58 95.99 -68.42 REMARK 500 10 LEU A 75 -70.55 -88.57 REMARK 500 11 SER A 4 82.08 -69.65 REMARK 500 11 TYR A 22 -74.50 -82.56 REMARK 500 11 LEU A 75 -77.69 -69.72 REMARK 500 12 TYR A 22 -79.21 -97.78 REMARK 500 12 LEU A 75 -75.04 -69.61 REMARK 500 13 GLU A 21 -70.72 -96.79 REMARK 500 13 TYR A 22 -73.10 -84.16 REMARK 500 13 LEU A 75 -74.00 -81.84 REMARK 500 13 ALA A 108 86.00 -68.65 REMARK 500 14 SER A 4 95.16 -68.62 REMARK 500 14 TYR A 22 -83.17 -96.07 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
DBREF 2X8N A 1 109 UNP Q7NZQ8 Q7NZQ8_CHRVO 1 109
SEQADV 2X8N GLN A -1 UNP Q7NZQ8 EXPRESSION TAG SEQADV 2X8N GLY A 0 UNP Q7NZQ8 EXPRESSION TAG
SEQRES 1 A 111 GLN GLY MET GLU VAL SER ALA ASN GLU LEU GLU ALA ALA SEQRES 2 A 111 SER SER ARG MET GLU MET LEU GLN ARG GLU TYR SER THR SEQRES 3 A 111 LEU ARG SER VAL GLN TYR ARG SER GLU GLU GLY VAL ILE SEQRES 4 A 111 VAL PHE ILE LEU ALA ASN ASP ARG GLU LEU LYS PHE ARG SEQRES 5 A 111 PRO ASP ASP LEU GLN ALA THR TYR GLY ALA THR PRO GLU SEQRES 6 A 111 GLN LEU ARG GLU ILE GLU ILE SER PRO SER GLY LEU GLY SEQRES 7 A 111 VAL TYR PHE GLU THR LEU GLU GLU ASP VAL SER LEU ILE SEQRES 8 A 111 GLY LEU LEU GLU GLY ARG ARG GLY SER ALA LYS TRP MET SEQRES 9 A 111 ALA GLU HIS PRO LEU ALA SER
HELIX 1 1 GLU A 9 TYR A 22 1 14 HELIX 2 2 SER A 87 GLY A 94 1 8 HELIX 3 3 SER A 98 HIS A 105 1 8
SHEET 1 AA 3 LEU A 25 ARG A 31 0 SHEET 2 AA 3 VAL A 36 LEU A 41 -1 O VAL A 36 N ARG A 31 SHEET 3 AA 3 GLU A 46 PHE A 49 -1 O LEU A 47 N PHE A 39 SHEET 1 AB 3 GLU A 69 ILE A 70 0 SHEET 2 AB 3 VAL A 77 PHE A 79 -1 N TYR A 78 O GLU A 69 SHEET 3 AB 3 GLU A 84 VAL A 86 -1 O GLU A 84 N PHE A 79
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000