10 20 30 40 50 60 70 80 2WXD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 09-NOV-09 2WXD
TITLE A MICROMOLAR O-SULFATED THIOHYDROXIMATE INHIBITOR BOUND TO TITLE 2 PLANT MYROSINASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYROSINASE; COMPND 3 CHAIN: M; COMPND 4 SYNONYM: SINIGRINASE, THIOGLUCOSIDASE; COMPND 5 EC: 3.2.3.1
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINAPIS ALBA; SOURCE 3 ORGANISM_COMMON: WHITE MUSTARD; SOURCE 4 ORGANISM_TAXID: 3728; SOURCE 5 STRAIN: EMERGO
KEYWDS VACUOLE, HYDROLASE, THIOHYDROXIMATE, GLUCOSINOLATE, FAMILY KEYWDS 2 1 GLYCOSYL HYDROLASE, GLYCOSIDASE, GLYCOPROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR A.BESLE,W.P.BURMEISTER
REVDAT 2 04-APR-12 2WXD 1 JRNL REMARK VERSN HETSYN REVDAT 1 09-FEB-10 2WXD 0
JRNL AUTH A.BESLE,X.BRAZZOLOTTO,A.TATIBOUET,D.CERNIAUSKAITE, JRNL AUTH 2 E.GALLIENNE,P.ROLLIN,W.P.BURMEISTER JRNL TITL A MICROMOLAR O-SULFATED THIOHYDROXIMATE INHIBITOR JRNL TITL 2 BOUND TO PLANT MYROSINASE JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 152 2010 JRNL REFN ISSN 1744-3091 JRNL PMID 20124710 JRNL DOI 10.1107/S1744309109052865
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.CERNIAUSKAITE,E.GALLIENNE,H.KARCIAUSKAITE, REMARK 1 AUTH 2 A.S.F.FARINHA,J.ROUSSEAU,S.ARMAND,A.TATIBOUET, REMARK 1 AUTH 3 A.SACKUS,P.ROLLIN REMARK 1 TITL A SIMPLE O-SULFATED THIOHYDROXIMATE MOLECULE TO BE REMARK 1 TITL 2 THE FIRST MICROMOLAR RANGE MYROSINASE INHIBITOR REMARK 1 REF TETRAHEDRON LETTERS V. 50 3302 2009 REMARK 1 REFN ISSN 0040-4039 REMARK 1 DOI 10.1016/J.TETLET.2009.02.072
REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.84 REMARK 3 NUMBER OF REFLECTIONS : 94531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.14368 REMARK 3 R VALUE (WORKING SET) : 0.14257 REMARK 3 FREE R VALUE : 0.16408 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 5075 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.600 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.642 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6894 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.223 REMARK 3 BIN FREE R VALUE SET COUNT : 359 REMARK 3 BIN FREE R VALUE : 0.263 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4082 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 392 REMARK 3 SOLVENT ATOMS : 764 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.436 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00 REMARK 3 B22 (A**2) : 0.00 REMARK 3 B33 (A**2) : 0.00 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.004 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4588 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3044 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6247 ; 2.574 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7338 ; 1.662 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 502 ; 6.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;33.636 ;24.131 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 665 ;11.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;13.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 698 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4813 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 934 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1077 ; 0.374 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3257 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2265 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2188 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 615 ; 0.205 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.060 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): 1 ; 0.100 ; 0.200 REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 57 ; 0.289 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 55 ; 0.320 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2504 ; 1.516 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1016 ; 0.539 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4077 ; 2.533 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2084 ; 5.507 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2169 ; 6.503 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY
REMARK 4 REMARK 4 2WXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-09. REMARK 100 THE PDBE ID CODE IS EBI-41679.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99631 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.60 REMARK 200 RESOLUTION RANGE LOW (A) : 80.85 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.63 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.87 REMARK 200 R MERGE FOR SHELL (I) : 0.38 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.71 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1E4M REMARK 200 REMARK 200 REMARK: ISOMORPHOUS TO 1E4M
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL PH 8, 68 % SAT REMARK 280 AMMONIUM SULFATE; PROTEIN IN HEPES PH 6.5, 150 MM NACL, REMARK 280 0.02 MM ZNSO4; HANGING DROPS 2 AND 2 UL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.36150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.36150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 68.12250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.78350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 68.12250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.78350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.36150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 68.12250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.78350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.36150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 68.12250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.78350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 136.24500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 121.08450
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN M1502 LIES ON A SPECIAL POSITION. REMARK 375 HOH M3024 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP M 1 REMARK 465 GLU M 2
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS M 375 CB CG CD CE NZ REMARK 470 ASP M 417 CG OD1 OD2 REMARK 470 LEU M 455 O
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP M 177 O HOH M 3324 2.08 REMARK 500 NZ LYS M 373 O HOH M 3539 1.81 REMARK 500 NE2 GLN M 493 O HOH M 3675 1.92 REMARK 500 O4 NAG M 921 O5 NAG M 923 2.19 REMARK 500 O4 NAG M 961 O5 NAG M 963 2.16 REMARK 500 O HOH M 3064 O HOH M 3066 1.87 REMARK 500 O HOH M 3287 O HOH M 3292 2.10 REMARK 500 O HOH M 3297 O HOH M 3300 2.11 REMARK 500 O HOH M 3325 O HOH M 3764 2.19 REMARK 500 O HOH M 3379 O HOH M 3386 1.82 REMARK 500 O HOH M 3433 O HOH M 3434 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH M 3198 O HOH M 3741 3656 2.12 REMARK 500 O HOH M 3250 O HOH M 3250 4576 1.49 REMARK 500 O HOH M 3255 O HOH M 3715 6565 2.18 REMARK 500 O HOH M 3285 O HOH M 3743 3656 2.19 REMARK 500 O HOH M 3285 O HOH M 3285 3656 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS M 14 CB CYS M 14 SG 0.108 REMARK 500 SER M 24 CB SER M 24 OG 0.091 REMARK 500 GLU M 151 CD GLU M 151 OE2 -0.076 REMARK 500 SER M 178 CB SER M 178 OG 0.119 REMARK 500 GLU M 222 CD GLU M 222 OE2 0.077 REMARK 500 TYR M 264 CE1 TYR M 264 CZ -0.082 REMARK 500 GLU M 372 CD GLU M 372 OE1 0.076 REMARK 500 TYR M 390 CE2 TYR M 390 CZ -0.123 REMARK 500 CYS M 434 CB CYS M 434 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG M 46 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR M 94 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG M 106 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU M 153 OE1 - CD - OE2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG M 205 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 TYR M 215 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG M 242 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG M 242 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 TYR M 264 CE1 - CZ - CE2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP M 266 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP M 268 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG M 269 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLU M 280 OE1 - CD - OE2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP M 301 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG M 306 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP M 323 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TYR M 334 CZ - CE2 - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TYR M 383 CE1 - CZ - CE2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TYR M 390 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR M 406 CE1 - CZ - CE2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG M 420 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU M 425 CB - CG - CD1 ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP M 426 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG M 429 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 CYS M 434 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP M 448 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS M 66 19.69 56.40 REMARK 500 THR M 72 -139.22 44.66 REMARK 500 HIS M 141 54.90 -109.86 REMARK 500 TRP M 142 -12.95 83.87 REMARK 500 TYR M 152 16.64 -146.30 REMARK 500 THR M 184 -76.92 -79.52 REMARK 500 GLN M 187 82.44 47.21 REMARK 500 ASN M 466 -23.32 85.05 REMARK 500 ASN M 482 88.99 -162.44 REMARK 500 REMARK 500 REMARK: NULL
REMARK 600 REMARK 600 HETEROGEN REMARK 600 S-(N,N-DIMETHYLAMINOETHYL) REMARK 600 PHENYLACETOTHIOHYDROXIMATE-O-SULFATE (E18): COMPOUND 8 OF REMARK 600 SECONDARY REFERENCE
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN M1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 56 NE2 REMARK 620 2 HIS M 56 NE2 113.3 REMARK 620 3 ASP M 70 OD2 118.8 102.8 REMARK 620 4 ASP M 70 OD2 106.5 119.3 95.5 REMARK 620 N 1 2 3
REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E18 M1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG M 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG M 931 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG M 971 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG M 991 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN M1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M2511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M2512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M2513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M2514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN M OF REMARK 800 SUGAR BOUND TO ASN M 60 RESIDUES 961 TO 963 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN M OF REMARK 800 SUGAR BOUND TO ASN M 90 RESIDUES 911 TO 913 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN M OF REMARK 800 SUGAR BOUND TO ASN M 218 RESIDUES 921 TO 923 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN M OF REMARK 800 SUGAR BOUND TO ASN M 265 RESIDUES 941 TO 945 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN M OF REMARK 800 SUGAR BOUND TO ASN M 292 RESIDUES 951 TO 957 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN M OF REMARK 800 SUGAR BOUND TO ASN M 361 RESIDUES 981 TO 983
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DWH RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED REMARK 900 CRYSTAL. STRUCTURE AFTER IRRADIATION WITH 27. REMARK 900 2*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1DWJ RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED REMARK 900 CRYSTAL. REFINED STRUCTURE AFTER A RADIATION REMARK 900 DOSE OF 54*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1E70 RELATED DB: PDB REMARK 900 2-F-GLUCOSYLATED MYROSINASE FROM SINAPIS REMARK 900 ALBA REMARK 900 RELATED ID: 1E72 RELATED DB: PDB REMARK 900 MYROSINASE FROM SINAPIS ALBA WITH BOUND REMARK 900 GLUCO-HYDROXIMOLACTAM AND SULFATE OR ASCORBATE REMARK 900 RELATED ID: 1E73 RELATED DB: PDB REMARK 900 2-F-GLUCOSYLATED MYROSINASE FROM SINAPIS REMARK 900 ALBA WITH BOUND L-ASCORBATE REMARK 900 RELATED ID: 1DWI RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED REMARK 900 CRYSTAL. STRUCTURE AFTER IRRADIATION WITH 54. REMARK 900 0*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1W9B RELATED DB: PDB REMARK 900 S. ALBA MYROSINASE IN COMPLEX WITH CARBA- REMARK 900 GLUCOTROPAEOLIN REMARK 900 RELATED ID: 1E71 RELATED DB: PDB REMARK 900 MYROSINASE FROM SINAPIS ALBA WITH BOUND REMARK 900 ASCORBATE REMARK 900 RELATED ID: 1DWG RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED REMARK 900 CRYSTAL: STRUCTURE AFTER IRRADIATION WITH 18. REMARK 900 2*10E15 PHOTONS/MM2. REMARK 900 RELATED ID: 1E6S RELATED DB: PDB REMARK 900 MYROSINASE FROM SINAPIS ALBA WITH BOUND REMARK 900 GLUCO-HYDROXIMOLACTAM AND SULFATE REMARK 900 RELATED ID: 1DWA RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED REMARK 900 CRYSTAL. STRUCTURE PRIOR TO IRRADIATION REMARK 900 RELATED ID: 1DWF RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED REMARK 900 CRYSTAL. STRUCTURE AFTER IRRADIATION WITH 9. REMARK 900 1*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1W9D RELATED DB: PDB REMARK 900 S. ALBA MYROSINASE IN COMPLEX WITH S-ETHYL REMARK 900 PHENYLACETOTHIOHYDROXIMATE-O-SULFATE REMARK 900 RELATED ID: 1MYR RELATED DB: PDB REMARK 900 MYROSINASE FROM SINAPIS ALBA REMARK 900 RELATED ID: 1E6Q RELATED DB: PDB REMARK 900 MYROSINASE FROM SINAPIS ALBA WITH THE BOUND REMARK 900 TRANSITION STATE ANALOGUE GLUCO-TETRAZOLE REMARK 900 RELATED ID: 1E4M RELATED DB: PDB REMARK 900 MYROSINASE FROM SINAPIS ALBA REMARK 900 RELATED ID: 1E6X RELATED DB: PDB REMARK 900 MYROSINASE FROM SINAPIS ALBA WITH A BOUND REMARK 900 TRANSITION STATE ANALOGUE,D-GLUCONO-1,5- REMARK 900 LACTONE
REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OBTAINED FROM ELECTRON DENSITY OF THE XRAY REMARK 999 STRUCTURE
DBREF 2WXD M 1 501 UNP P29736 MYRA_SINAL 1 501
SEQRES 1 M 501 ASP GLU GLU ILE THR CYS GLN GLU ASN LEU PRO PHE THR SEQRES 2 M 501 CYS GLY ASN THR ASP ALA LEU ASN SER SER SER PHE SER SEQRES 3 M 501 SER ASP PHE ILE PHE GLY VAL ALA SER SER ALA TYR GLN SEQRES 4 M 501 ILE GLU GLY THR ILE GLY ARG GLY LEU ASN ILE TRP ASP SEQRES 5 M 501 GLY PHE THR HIS ARG TYR PRO ASN LYS SER GLY PRO ASP SEQRES 6 M 501 HIS GLY ASN GLY ASP THR THR CYS ASP SER PHE SER TYR SEQRES 7 M 501 TRP GLN LYS ASP ILE ASP VAL LEU ASP GLU LEU ASN ALA SEQRES 8 M 501 THR GLY TYR ARG PHE SER ILE ALA TRP SER ARG ILE ILE SEQRES 9 M 501 PRO ARG GLY LYS ARG SER ARG GLY VAL ASN GLU LYS GLY SEQRES 10 M 501 ILE ASP TYR TYR HIS GLY LEU ILE SER GLY LEU ILE LYS SEQRES 11 M 501 LYS GLY ILE THR PRO PHE VAL THR LEU PHE HIS TRP ASP SEQRES 12 M 501 LEU PRO GLN THR LEU GLN ASP GLU TYR GLU GLY PHE LEU SEQRES 13 M 501 ASP PRO GLN ILE ILE ASP ASP PHE LYS ASP TYR ALA ASP SEQRES 14 M 501 LEU CYS PHE GLU GLU PHE GLY ASP SER VAL LYS TYR TRP SEQRES 15 M 501 LEU THR ILE ASN GLN LEU TYR SER VAL PRO THR ARG GLY SEQRES 16 M 501 TYR GLY SER ALA LEU ASP ALA PRO GLY ARG CYS SER PRO SEQRES 17 M 501 THR VAL ASP PRO SER CYS TYR ALA GLY ASN SER SER THR SEQRES 18 M 501 GLU PRO TYR ILE VAL ALA HIS HIS GLN LEU LEU ALA HIS SEQRES 19 M 501 ALA LYS VAL VAL ASP LEU TYR ARG LYS ASN TYR THR HIS SEQRES 20 M 501 GLN GLY GLY LYS ILE GLY PRO THR MET ILE THR ARG TRP SEQRES 21 M 501 PHE LEU PRO TYR ASN ASP THR ASP ARG HIS SER ILE ALA SEQRES 22 M 501 ALA THR GLU ARG MET LYS GLU PHE PHE LEU GLY TRP PHE SEQRES 23 M 501 MET GLY PRO LEU THR ASN GLY THR TYR PRO GLN ILE MET SEQRES 24 M 501 ILE ASP THR VAL GLY GLU ARG LEU PRO SER PHE SER PRO SEQRES 25 M 501 GLU GLU SER ASN LEU VAL LYS GLY SER TYR ASP PHE LEU SEQRES 26 M 501 GLY LEU ASN TYR TYR PHE THR GLN TYR ALA GLN PRO SER SEQRES 27 M 501 PRO ASN PRO VAL ASN SER THR ASN HIS THR ALA MET MET SEQRES 28 M 501 ASP ALA GLY ALA LYS LEU THR TYR ILE ASN ALA SER GLY SEQRES 29 M 501 HIS TYR ILE GLY PRO LEU PHE GLU LYS ASP LYS ALA ASP SEQRES 30 M 501 SER THR ASP ASN ILE TYR TYR TYR PRO LYS GLY ILE TYR SEQRES 31 M 501 SER VAL MET ASP TYR PHE LYS ASN LYS TYR TYR ASN PRO SEQRES 32 M 501 LEU ILE TYR VAL THR GLU ASN GLY ILE SER THR PRO GLY SEQRES 33 M 501 ASP GLU ASN ARG ASN GLN SER MET LEU ASP TYR THR ARG SEQRES 34 M 501 ILE ASP TYR LEU CYS SER HIS LEU CYS PHE LEU ASN LYS SEQRES 35 M 501 VAL ILE LYS GLU LYS ASP VAL ASN VAL LYS GLY TYR LEU SEQRES 36 M 501 ALA TRP ALA LEU GLY ASP ASN TYR GLU PHE ASN LYS GLY SEQRES 37 M 501 PHE THR VAL ARG PHE GLY LEU SER TYR ILE ASP TRP ASN SEQRES 38 M 501 ASN VAL THR ASP ARG ASP LEU LYS LYS SER GLY GLN TRP SEQRES 39 M 501 TYR GLN SER PHE ILE SER PRO
HET SO4 M1503 10 HET E18 M1501 20 HET NAG M 901 14 HET NAG M 911 14 HET NAG M 913 14 HET NAG M 921 14 HET NAG M 923 14 HET NAG M 931 14 HET NAG M 941 14 HET FUC M 942 10 HET NAG M 943 14 HET BMA M 944 11 HET XYP M 945 9 HET NAG M 951 14 HET FUC M 952 10 HET NAG M 953 14 HET BMA M 954 11 HET XYP M 955 9 HET MAN M 956 11 HET MAN M 957 11 HET NAG M 961 14 HET NAG M 963 14 HET NAG M 971 14 HET NAG M 981 14 HET NAG M 983 14 HET NAG M 991 14 HET ZN M1502 1 HET SO4 M1504 5 HET SO4 M1505 5 HET SO4 M1506 5 HET SO4 M1507 5 HET SO4 M1508 5 HET SO4 M1509 5 HET GOL M2511 6 HET GOL M2512 7 HET GOL M2513 6 HET GOL M2514 6
HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM E18 2-(DIMETHYLAMINO)ETHYL (1Z)-2-PHENYL-N- HETNAM 2 E18 (SULFOOXY)ETHANIMIDOTHIOATE HETNAM GOL GLYCEROL HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM FUC ALPHA-L-FUCOSE HETNAM MAN ALPHA-D-MANNOSE HETNAM BMA BETA-D-MANNOSE
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 NAG 16(C8 H15 N O6) FORMUL 3 ZN ZN 2+ FORMUL 4 SO4 7(O4 S 2-) FORMUL 5 E18 C12 H18 N2 O4 S2 FORMUL 6 GOL 4(C3 H8 O3) FORMUL 7 XYP 2(C5 H10 O5) FORMUL 8 FUC 2(C6 H12 O5) FORMUL 9 MAN 2(C6 H12 O6) FORMUL 10 BMA 2(C6 H12 O6) FORMUL 11 HOH *764(H2 O)
HELIX 1 1 ASN M 21 PHE M 25 5 5 HELIX 2 2 SER M 36 GLU M 41 1 6 HELIX 3 3 ASN M 49 TYR M 58 1 10 HELIX 4 4 TYR M 58 GLY M 63 1 6 HELIX 5 5 ASP M 74 ASN M 90 1 17 HELIX 6 6 ALA M 99 ILE M 104 1 6 HELIX 7 7 LYS M 108 GLY M 112 5 5 HELIX 8 8 ASN M 114 LYS M 131 1 18 HELIX 9 9 PRO M 145 GLU M 153 1 9 HELIX 10 10 GLY M 154 PRO M 158 5 5 HELIX 11 11 GLN M 159 GLY M 176 1 18 HELIX 12 12 TYR M 189 GLY M 197 1 9 HELIX 13 13 THR M 221 TYR M 245 1 25 HELIX 14 14 THR M 246 GLY M 249 5 4 HELIX 15 15 ASP M 268 LEU M 283 1 16 HELIX 16 16 LEU M 283 GLY M 293 1 11 HELIX 17 17 PRO M 296 GLY M 304 1 9 HELIX 18 18 GLU M 305 LEU M 307 5 3 HELIX 19 19 SER M 311 LYS M 319 1 9 HELIX 20 20 THR M 348 ALA M 353 5 6 HELIX 21 21 ASP M 377 ASN M 381 5 5 HELIX 22 22 PRO M 386 TYR M 400 1 15 HELIX 23 23 ASN M 419 LEU M 425 1 7 HELIX 24 24 ASP M 426 ASP M 448 1 23 HELIX 25 25 LYS M 489 SER M 500 1 12
SHEET 1 MA 6 LYS M 251 GLY M 253 0 SHEET 2 MA 6 TYR M 181 ILE M 185 1 O TRP M 182 N GLY M 253 SHEET 3 MA 6 THR M 134 PHE M 140 1 O VAL M 137 N LEU M 183 SHEET 4 MA 6 GLY M 93 SER M 97 1 O TYR M 94 N PHE M 136 SHEET 5 MA 6 ILE M 30 ALA M 34 1 O VAL M 33 N ARG M 95 SHEET 6 MA 6 GLY M 453 TRP M 457 1 O TYR M 454 N GLY M 32 SHEET 1 MB 2 THR M 255 PRO M 263 0 SHEET 2 MB 2 LEU M 325 PRO M 337 1 O GLY M 326 N MET M 256 SHEET 1 MC 2 ALA M 355 THR M 358 0 SHEET 2 MC 2 LEU M 325 PRO M 337 -1 O TYR M 334 N THR M 358 SHEET 1 MD 4 ASN M 450 VAL M 451 0 SHEET 2 MD 4 LEU M 404 GLU M 409 1 N ILE M 405 O ASN M 450 SHEET 3 MD 4 LEU M 325 PRO M 337 1 O LEU M 325 N TYR M 406 SHEET 4 MD 4 ALA M 355 THR M 358 -1 O LYS M 356 N GLN M 336 SHEET 1 ME 4 ASN M 450 VAL M 451 0 SHEET 2 ME 4 LEU M 404 GLU M 409 1 N ILE M 405 O ASN M 450 SHEET 3 ME 4 LEU M 325 PRO M 337 1 O LEU M 325 N TYR M 406 SHEET 4 ME 4 THR M 255 PRO M 263 1 O MET M 256 N ASN M 328 SHEET 1 MF 2 LEU M 370 GLU M 372 0 SHEET 2 MF 2 ILE M 382 TYR M 383 -1 O ILE M 382 N PHE M 371 SHEET 1 MG 2 THR M 414 PRO M 415 0 SHEET 2 MG 2 VAL M 471 ARG M 472 -1 O ARG M 472 N THR M 414 SHEET 1 MH 2 SER M 476 ASP M 479 0 SHEET 2 MH 2 ASN M 482 LEU M 488 -1 N ASN M 482 O ASP M 479
SSBOND 1 CYS M 14 CYS M 434 1555 1555 2.26 SSBOND 2 CYS M 206 CYS M 214 1555 1555 2.10
LINK ND2 ASN M 21 C1 NAG M 901 1555 1555 1.62 LINK ND2 ASN M 60 C1 NAG M 961 1555 1555 1.65 LINK ND2 ASN M 90 C1 NAG M 911 1555 1555 1.60 LINK ND2 ASN M 218 C1 NAG M 921 1555 1555 1.58 LINK ND2 ASN M 244 C1 NAG M 931 1555 1555 1.78 LINK ND2 ASN M 265 C1 NAG M 941 1555 1555 1.50 LINK ND2 ASN M 292 C1 NAG M 951 1555 1555 1.58 LINK ND2 ASN M 346 C1 NAG M 971 1555 1555 1.79 LINK ND2 ASN M 361 C1 NAG M 981 1555 1555 1.44 LINK ND2 ASN M 482 C1 NAG M 991 1555 1555 1.68 LINK O4 NAG M 911 C1 NAG M 913 1555 1555 1.71 LINK O4 NAG M 921 C1 NAG M 923 1555 1555 1.60 LINK O4 NAG M 941 C1 NAG M 943 1555 1555 1.39 LINK O3 NAG M 941 C1 FUC M 942 1555 1555 1.50 LINK O4 NAG M 943 C1 BMA M 944 1555 1555 1.65 LINK O2 BMA M 944 C1B XYP M 945 1555 1555 1.70 LINK O4 NAG M 951 C1 NAG M 953 1555 1555 1.53 LINK O3 NAG M 951 C1 FUC M 952 1555 1555 1.47 LINK O4 NAG M 953 C1 BMA M 954 1555 1555 1.50 LINK O2 BMA M 954 C1B XYP M 955 1555 1555 1.54 LINK O3 BMA M 954 C1 MAN M 956 1555 1555 1.56 LINK O6 BMA M 954 C1 MAN M 957 1555 1555 1.66 LINK O4 NAG M 961 C1 NAG M 963 1555 1555 1.80 LINK O4 NAG M 981 C1 NAG M 983 1555 1555 1.57 LINK ZN ZN M1502 OD2 ASP M 70 1555 3656 1.92 LINK ZN ZN M1502 OD2 ASP M 70 1555 1555 1.97 LINK ZN ZN M1502 NE2 HIS M 56 1555 3656 1.97 LINK ZN ZN M1502 NE2 HIS M 56 1555 1555 1.93
CISPEP 1 LEU M 10 PRO M 11 0 -4.50 CISPEP 2 ALA M 202 PRO M 203 0 7.15 CISPEP 3 TRP M 457 ALA M 458 0 2.35
SITE 1 AC1 9 ARG M 194 ARG M 259 GLN M 333 E18 M1501 SITE 2 AC1 9 HOH M3332 HOH M3334 HOH M3734 HOH M3735 SITE 3 AC1 9 HOH M3736 SITE 1 AC2 14 GLN M 187 TYR M 189 SER M 190 ARG M 194 SITE 2 AC2 14 ILE M 257 ARG M 259 TYR M 330 PHE M 371 SITE 3 AC2 14 GLU M 409 TRP M 457 GLU M 464 PHE M 473 SITE 4 AC2 14 SO4 M1503 HOH M3641 SITE 1 AC3 8 THR M 17 ASP M 18 ALA M 19 ASN M 21 SITE 2 AC3 8 SER M 24 PRO M 501 HOH M3683 HOH M3684 SITE 1 AC4 6 LYS M 165 ASP M 239 LEU M 240 ASN M 244 SITE 2 AC4 6 HOH M3366 HOH M3369 SITE 1 AC5 3 SER M 344 ASN M 346 HOH M3504 SITE 1 AC6 3 ASN M 482 ASP M 485 HOH M3661 SITE 1 AC7 2 HIS M 56 ASP M 70 SITE 1 AC8 5 ARG M 205 HOH M3210 HOH M3739 HOH M3740 SITE 2 AC8 5 HOH M3741 SITE 1 AC9 6 LYS M 108 ARG M 111 HOH M3207 HOH M3286 SITE 2 AC9 6 HOH M3742 HOH M3743 SITE 1 BC1 8 GLN M 7 GLU M 8 ASN M 9 HOH M3008 SITE 2 BC1 8 HOH M3744 HOH M3746 HOH M3747 HOH M3748 SITE 1 BC2 7 HIS M 270 ALA M 273 ARG M 277 HOH M3749 SITE 2 BC2 7 HOH M3750 HOH M3751 HOH M3752 SITE 1 BC3 6 ARG M 109 VAL M 113 GLU M 173 HOH M3203 SITE 2 BC3 6 HOH M3753 HOH M3754 SITE 1 BC4 4 ASN M 60 HIS M 66 NAG M 961 HOH M3755 SITE 1 BC5 8 ARG M 269 HIS M 270 ASN M 316 HOH M3409 SITE 2 BC5 8 HOH M3467 HOH M3700 HOH M3756 HOH M3757 SITE 1 BC6 9 ILE M 50 PHE M 54 ARG M 57 GLN M 146 SITE 2 BC6 9 GLN M 149 PRO M 203 TYR M 215 HOH M3288 SITE 3 BC6 9 HOH M3758 SITE 1 BC7 10 HIS M 247 GLY M 249 GLU M 280 GLN M 297 SITE 2 BC7 10 ILE M 298 FUC M 952 HOH M3710 HOH M3759 SITE 3 BC7 10 HOH M3760 HOH M3761 SITE 1 BC8 7 GLY M 132 THR M 134 FUC M 952 NAG M 953 SITE 2 BC8 7 BMA M 954 HOH M3763 HOH M3764 SITE 1 BC9 9 ASN M 60 SER M 213 SO4 M1509 HOH M3089 SITE 2 BC9 9 HOH M3108 HOH M3725 HOH M3726 HOH M3727 SITE 3 BC9 9 HOH M3728 SITE 1 CC1 8 ASN M 90 SER M 500 MAN M 957 HOH M3481 SITE 2 CC1 8 HOH M3685 HOH M3686 HOH M3687 HOH M3688 SITE 1 CC2 11 SER M 207 ASN M 218 THR M 221 GLU M 305 SITE 2 CC2 11 HOH M3354 HOH M3448 HOH M3689 HOH M3690 SITE 3 CC2 11 HOH M3691 HOH M3692 HOH M3693 SITE 1 CC3 17 ASN M 265 ASP M 268 ASN M 316 LYS M 319 SITE 2 CC3 17 ALA M 362 HOH M3409 HOH M3695 HOH M3696 SITE 3 CC3 17 HOH M3698 HOH M3699 HOH M3700 HOH M3701 SITE 4 CC3 17 HOH M3702 HOH M3703 HOH M3704 HOH M3705 SITE 5 CC3 17 HOH M3706 SITE 1 CC4 34 SER M 27 ASP M 28 ASN M 90 ALA M 91 SITE 2 CC4 34 THR M 92 ILE M 129 LYS M 131 GLY M 132 SITE 3 CC4 34 ASN M 292 THR M 294 GLN M 297 NAG M 911 SITE 4 CC4 34 GOL M2513 GOL M2514 HOH M3165 HOH M3171 SITE 5 CC4 34 HOH M3252 HOH M3430 HOH M3707 HOH M3708 SITE 6 CC4 34 HOH M3709 HOH M3710 HOH M3711 HOH M3712 SITE 7 CC4 34 HOH M3713 HOH M3714 HOH M3716 HOH M3717 SITE 8 CC4 34 HOH M3718 HOH M3719 HOH M3720 HOH M3722 SITE 9 CC4 34 HOH M3723 HOH M3760 SITE 1 CC5 13 PRO M 11 ASN M 265 ASP M 266 ASN M 361 SITE 2 CC5 13 SER M 363 HIS M 365 HOH M3399 HOH M3403 SITE 3 CC5 13 HOH M3405 HOH M3485 HOH M3729 HOH M3730 SITE 4 CC5 13 HOH M3731
CRYST1 136.245 137.567 80.723 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007340 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007269 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012388 0.00000