10 20 30 40 50 60 70 80 2WT0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 10-SEP-09 2WT0
TITLE GALECTIN DOMAIN OF PORCINE ADENOVIRUS TYPE 4 NADC-1 ISOLATE FIBRE TITLE 2 COMPLEXED WITH N-ACETYL-LACTOSAMINE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FIBER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GALECTIN DOMAIN, RESIDUES 393-703; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE ADENOVIRUS 4; SOURCE 3 ORGANISM_TAXID: 35267; SOURCE 4 VARIANT: NADC-1 ISOLATE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28C
KEYWDS VIRAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR P.GUARDADO-CALVO,E.M.MUNOZ,A.L.LLAMAS-SAIZ,G.C.FOX,J.N.GLASGOW, AUTHOR 2 M.J.VAN RAAIJ
REVDAT 3 13-APR-11 2WT0 1 REMARK REVDAT 2 29-SEP-10 2WT0 1 JRNL REVDAT 1 11-AUG-10 2WT0 0
JRNL AUTH P.GUARDADO-CALVO,E.M.MUNOZ,A.L.LLAMAS-SAIZ,G.C.FOX,R.KAHN, JRNL AUTH 2 D.T.CURIEL,J.N.GLASGOW,M.J.VAN RAAIJ JRNL TITL CRYSTALLOGRAPHIC STRUCTURE OF PORCINE ADENOVIRUS 4 FIBRE 2 JRNL TITL 2 HEAD AND GALECTIN DOMAINS. JRNL REF J.VIROL. V. 84 10558 2010 JRNL REFN ISSN 0022-538X JRNL PMID 20686025 JRNL DOI 10.1128/JVI.00997-10
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.B.KLEIBOEKER REMARK 1 TITL SEQUENCE ANALYSIS OF THE FIBER GENOMIC REGION OF A PORCINE REMARK 1 TITL 2 ADENOVIRUS PREDICTS A NOVEL FIBER PROTEIN. REMARK 1 REF VIRUS RES. V. 39 299 1995 REMARK 1 REFN ISSN 0168-1702 REMARK 1 PMID 8837892 REMARK 1 DOI 10.1016/0168-1702(95)00079-8 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.P.L.PAUL,M.EVERTS,J.N.GLASGOW,P.DENT,P.B.FISHER, REMARK 1 AUTH 2 I.V.ULASOV,M.S.LESNIAK,M.A.STOFF-KHALILI,J.C.ROTH, REMARK 1 AUTH 3 M.A.PREUSS,C.M.F.DIRVEN,M.L.M.LAMFERS,G.P.SIEGAL,Z.B.ZHU, REMARK 1 AUTH 4 D.T.CURIEL REMARK 1 TITL CHARACTERIZATION OF INFECTIVITY OF KNOB-MODIFIED ADENOVIRAL REMARK 1 TITL 2 VECTORS IN GLIOMA. REMARK 1 REF CANCER BIOL.THER. V. 7 786 2008 REMARK 1 REFN ISSN 1538-4047 REMARK 1 PMID 18756624 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.GUARDADO-CALVO,A.L.LLAMAS-SAIZ,G.C.FOX,J.N.GLASGOW, REMARK 1 AUTH 2 M.J.VAN RAAIJ REMARK 1 TITL CRYSTALLISATION OF THE HEAD AND GALECTIN-LIKE DOMAINS OF REMARK 1 TITL 2 PORCINE ADENOVIRUS ISOLATE NADC-1 FIBRE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 1149 2009 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 19923738 REMARK 1 DOI 10.1107/S1744309109038287
REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 97.45 REMARK 3 NUMBER OF REFLECTIONS : 20895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18443 REMARK 3 R VALUE (WORKING SET) : 0.18163 REMARK 3 FREE R VALUE : 0.23799 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1126 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.910 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.013 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3071 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.270 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.337 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.423 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.591 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.09 REMARK 3 B22 (A**2) : 2.13 REMARK 3 B33 (A**2) : -0.87 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.31 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.047 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2467 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1650 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3375 ; 1.345 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4036 ; 0.857 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 6.897 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;37.303 ;23.868 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;13.064 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.040 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2710 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 480 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 322 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1541 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1116 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1289 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 131 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.090 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1524 ; 2.536 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 594 ; 0.928 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2483 ; 3.443 ; 7.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 943 ; 3.843 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 892 ; 5.351 ; 9.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 386 A 391 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9170 3.3250 33.2880 REMARK 3 T TENSOR REMARK 3 T11: 0.2683 T22: 0.3365 REMARK 3 T33: 0.2129 T12: 0.0849 REMARK 3 T13: -0.0179 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 19.6038 L22: 1.0577 REMARK 3 L33: 0.0099 L12: 4.5526 REMARK 3 L13: -0.3693 L23: -0.0863 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: 0.1491 S13: 0.0177 REMARK 3 S21: -0.0019 S22: 0.0409 S23: 0.0086 REMARK 3 S31: -0.0139 S32: -0.0306 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 392 A 525 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1000 -1.8260 12.5130 REMARK 3 T TENSOR REMARK 3 T11: 0.0307 T22: 0.1106 REMARK 3 T33: 0.0430 T12: 0.0307 REMARK 3 T13: -0.0080 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 3.7012 L22: 1.3190 REMARK 3 L33: 3.6009 L12: -0.5606 REMARK 3 L13: -0.3766 L23: 0.3324 REMARK 3 S TENSOR REMARK 3 S11: -0.1009 S12: 0.0000 S13: 0.1016 REMARK 3 S21: -0.0225 S22: 0.0716 S23: -0.2187 REMARK 3 S31: -0.0255 S32: 0.2724 S33: 0.0293 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 526 A 543 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2890 -11.5950 25.8110 REMARK 3 T TENSOR REMARK 3 T11: 0.3286 T22: 0.6458 REMARK 3 T33: 0.3352 T12: 0.0303 REMARK 3 T13: 0.0021 T23: 0.0580 REMARK 3 L TENSOR REMARK 3 L11: 11.3528 L22: 7.2551 REMARK 3 L33: 4.1910 L12: -9.0527 REMARK 3 L13: 0.7387 L23: -0.9745 REMARK 3 S TENSOR REMARK 3 S11: -0.9823 S12: -0.4472 S13: -0.1211 REMARK 3 S21: 0.7878 S22: 0.4040 S23: 0.0303 REMARK 3 S31: -0.0379 S32: -0.6135 S33: 0.5783 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 544 A 685 REMARK 3 ORIGIN FOR THE GROUP (A): -35.4570 6.7960 17.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.0385 T22: 0.1205 REMARK 3 T33: 0.0293 T12: 0.0316 REMARK 3 T13: 0.0111 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 3.5836 L22: 2.8680 REMARK 3 L33: 2.6208 L12: -1.0642 REMARK 3 L13: -0.0328 L23: -0.1059 REMARK 3 S TENSOR REMARK 3 S11: -0.0848 S12: -0.0554 S13: 0.0367 REMARK 3 S21: 0.0492 S22: 0.2133 S23: 0.2173 REMARK 3 S31: 0.0206 S32: -0.2225 S33: -0.1284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED
REMARK 4 REMARK 4 2WT0 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-09. REMARK 100 THE PDBE ID CODE IS EBI-41113.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.815 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT, VERTICALLY FOCUSSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : FLATPANEL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22025 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.91 REMARK 200 RESOLUTION RANGE LOW (A) : 35.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 2.7 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.7 REMARK 200 R MERGE FOR SHELL (I) : 0.31 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WSU, CHAIN A REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% (W/V) PEG 3350, 500 MM SODIUM REMARK 280 NITRATE, 5 MM DITHIOTHREITOL, 40 MM N-ACETYL-LACTOSAMINE, 10 MM REMARK 280 TRIS-HCL 8.0
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.22500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.22500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 361 REMARK 465 GLY A 362 REMARK 465 SER A 363 REMARK 465 SER A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 SER A 371 REMARK 465 SER A 372 REMARK 465 GLY A 373 REMARK 465 LEU A 374 REMARK 465 VAL A 375 REMARK 465 PRO A 376 REMARK 465 ARG A 377 REMARK 465 GLY A 378 REMARK 465 SER A 379 REMARK 465 HIS A 380 REMARK 465 MET A 381 REMARK 465 ALA A 382 REMARK 465 SER A 383 REMARK 465 MET A 384 REMARK 465 THR A 385 REMARK 465 ASP A 686 REMARK 465 THR A 687 REMARK 465 PRO A 688 REMARK 465 VAL A 689 REMARK 465 PHE A 690 REMARK 465 SER A 691 REMARK 465 THR A 692 REMARK 465 ALA A 693 REMARK 465 GLY A 694 REMARK 465 VAL A 695 REMARK 465 SER A 696 REMARK 465 LYS A 697 REMARK 465 VAL A 698 REMARK 465 TYR A 699 REMARK 465 PRO A 700 REMARK 465 GLN A 701 REMARK 465 ILE A 702 REMARK 465 LEU A 703
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 394 -29.02 -140.29 REMARK 500 ALA A 430 -61.16 81.31 REMARK 500 PRO A 540 -91.95 -73.62 REMARK 500 ASP A 542 116.88 -31.24 REMARK 500 ARG A 640 -160.32 -110.76 REMARK 500 REMARK 500 REMARK: NULL
REMARK 600 REMARK 600 HETEROGEN REMARK 600 BETA-D-GALACTOSE (GAL): PART OF OLIGOMER REMARK 600 N-ACETYL-D-GLUCOSAMINE (NAG): PART OF OLIGOMER
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A1686 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A1687 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A1688 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A1689 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL A1690 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A1691
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WT1 RELATED DB: PDB REMARK 900 GALECTIN DOMAIN OF PORCINE ADENOVIRUS TYPE 4 NADC-1 ISOLATE REMARK 900 FIBRE COMPLEXED WITH LACTO -N-NEO-TETRAOSE REMARK 900 RELATED ID: 2WSV RELATED DB: PDB REMARK 900 GALECTIN DOMAIN OF PORCINE ADENOVIRUS TYPE 4 NADC-1 ISOLATE REMARK 900 FIBRE COMPLEXED WITH LACTOSE REMARK 900 RELATED ID: 2WSU RELATED DB: PDB REMARK 900 GALECTIN DOMAIN OF PORCINE ADENOVIRUS TYPE 4 NADC-1 ISOLATE REMARK 900 FIBRE REMARK 900 RELATED ID: 2WST RELATED DB: PDB REMARK 900 HEAD DOMAIN OF PORCINE ADENOVIRUS TYPE 4 NADC-1 ISOLATE REMARK 900 FIBRE REMARK 900 RELATED ID: 2WT2 RELATED DB: PDB REMARK 900 GALECTIN DOMAIN OF PORCINE ADENOVIRUS TYPE 4 NADC-1 ISOLATE REMARK 900 FIBRE COMPLEXED WITH TRI( N-ACETYL-LACTOSAMINE)
DBREF 2WT0 A 393 703 UNP Q83467 Q83467_ADEP4 393 703
SEQADV 2WT0 MET A 361 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 GLY A 362 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 SER A 363 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 SER A 364 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 HIS A 365 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 HIS A 366 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 HIS A 367 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 HIS A 368 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 HIS A 369 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 HIS A 370 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 SER A 371 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 SER A 372 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 GLY A 373 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 LEU A 374 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 VAL A 375 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 PRO A 376 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 ARG A 377 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 GLY A 378 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 SER A 379 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 HIS A 380 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 MET A 381 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 ALA A 382 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 SER A 383 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 MET A 384 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 THR A 385 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 GLY A 386 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 GLY A 387 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 GLN A 388 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 GLN A 389 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 GLY A 390 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 ARG A 391 UNP Q83467 EXPRESSION TAG SEQADV 2WT0 ILE A 392 UNP Q83467 EXPRESSION TAG
SEQRES 1 A 343 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 343 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 343 GLY GLN GLN GLY ARG ILE PRO PHE VAL LEU PRO LEU PRO SEQRES 4 A 343 ASP GLY VAL PRO THR GLY ALA SER ILE VAL LEU GLU GLY SEQRES 5 A 343 THR LEU THR PRO SER ALA VAL PHE PHE THR LEU ASP LEU SEQRES 6 A 343 VAL THR GLY PRO ALA SER LEU ALA LEU HIS PHE ASN VAL SEQRES 7 A 343 ARG LEU PRO LEU GLU GLY GLU LYS HIS ILE VAL CYS ASN SEQRES 8 A 343 SER ARG GLU GLY SER SER ASN TRP GLY GLU GLU VAL ARG SEQRES 9 A 343 PRO GLN GLU PHE PRO PHE GLU ARG GLU LYS PRO PHE VAL SEQRES 10 A 343 LEU VAL ILE VAL ILE GLN SER ASP THR TYR GLN ILE THR SEQRES 11 A 343 VAL ASN GLY LYS PRO LEU VAL ASP PHE PRO GLN ARG LEU SEQRES 12 A 343 GLN GLY ILE THR ARG ALA SER LEU SER GLY ASP LEU VAL SEQRES 13 A 343 PHE THR ARG LEU THR MET TYR PRO PRO GLY ASP PRO ARG SEQRES 14 A 343 PRO THR THR LEU LEU PRO PRO PRO ALA ALA PRO LEU ASP SEQRES 15 A 343 VAL ILE PRO ASP ALA TYR VAL LEU ASN LEU PRO THR GLY SEQRES 16 A 343 LEU THR PRO ARG THR LEU LEU THR VAL THR GLY THR PRO SEQRES 17 A 343 THR PRO LEU ALA GLU PHE PHE ILE VAL ASN LEU VAL TYR SEQRES 18 A 343 ASP LEU HIS TYR ASP SER LYS ASN VAL ALA LEU HIS PHE SEQRES 19 A 343 ASN VAL GLY PHE THR SER ASP SER LYS GLY HIS ILE ALA SEQRES 20 A 343 CYS ASN ALA ARG MET ASN GLY THR TRP GLY SER GLU ILE SEQRES 21 A 343 THR VAL SER ASP PHE PRO PHE GLN ARG GLY LYS PRO PHE SEQRES 22 A 343 THR LEU GLN ILE LEU THR ARG GLU ALA ASP PHE GLN VAL SEQRES 23 A 343 LEU VAL ASP LYS GLN PRO LEU THR GLN PHE GLN TYR ARG SEQRES 24 A 343 LEU LYS GLU LEU ASP GLN ILE LYS TYR VAL HIS MET PHE SEQRES 25 A 343 GLY HIS VAL VAL GLN THR HIS LEU GLU HIS GLN VAL PRO SEQRES 26 A 343 ASP THR PRO VAL PHE SER THR ALA GLY VAL SER LYS VAL SEQRES 27 A 343 TYR PRO GLN ILE LEU
HET NO3 A1686 4 HET NO3 A1687 4 HET NO3 A1688 4 HET NO3 A1689 4 HET GAL A1690 11 HET NAG A1691 15
HETNAM NO3 NITRATE ION HETNAM GAL BETA-D-GALACTOSE HETNAM NAG N-ACETYL-D-GLUCOSAMINE
FORMUL 2 NO3 4(N O3 1-) FORMUL 3 GAL C6 H12 O6 FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *163(H2 O)
HELIX 1 1 ARG A 529 LEU A 533 5 5 HELIX 2 2 GLU A 662 ILE A 666 5 5
SHEET 1 AA 5 VAL A 395 PRO A 397 0 SHEET 2 AA 5 ARG A 508 SER A 512 -1 O ALA A 509 N LEU A 396 SHEET 3 AA 5 PHE A 420 VAL A 426 -1 O THR A 422 N SER A 512 SHEET 4 AA 5 LEU A 432 ARG A 439 -1 N ALA A 433 O LEU A 425 SHEET 5 AA 5 HIS A 447 ARG A 453 -1 O HIS A 447 N ARG A 439 SHEET 1 AB 5 PRO A 495 PRO A 500 0 SHEET 2 AB 5 THR A 486 VAL A 491 -1 O TYR A 487 N PHE A 499 SHEET 3 AB 5 LEU A 478 ILE A 482 -1 O VAL A 479 N THR A 490 SHEET 4 AB 5 SER A 407 LEU A 414 -1 O ILE A 408 N ILE A 480 SHEET 5 AB 5 LEU A 515 TYR A 523 -1 N VAL A 516 O THR A 413 SHEET 1 AC 6 VAL A 549 ASN A 551 0 SHEET 2 AC 6 TYR A 668 PHE A 672 -1 O VAL A 669 N LEU A 550 SHEET 3 AC 6 PHE A 575 VAL A 580 -1 O ILE A 576 N PHE A 672 SHEET 4 AC 6 VAL A 590 VAL A 596 -1 N ALA A 591 O LEU A 579 SHEET 5 AC 6 ILE A 606 ARG A 611 -1 O ALA A 607 N ASN A 595 SHEET 6 AC 6 ILE A 620 VAL A 622 -1 O ILE A 620 N CYS A 608 SHEET 1 AD 5 GLN A 651 GLN A 657 0 SHEET 2 AD 5 ASP A 643 VAL A 648 -1 O PHE A 644 N PHE A 656 SHEET 3 AD 5 LEU A 635 THR A 639 -1 O GLN A 636 N LEU A 647 SHEET 4 AD 5 LEU A 561 PRO A 568 -1 O LEU A 562 N ILE A 637 SHEET 5 AD 5 VAL A 675 GLN A 683 -1 N VAL A 676 O THR A 567
LINK C1 GAL A1690 O4 NAG A1691 1555 1555 1.45
SITE 1 AC1 8 THR A 415 PRO A 416 SER A 417 ASP A 546 SITE 2 AC1 8 ALA A 547 TYR A 548 VAL A 549 HOH A2067 SITE 1 AC2 7 ILE A 392 PRO A 393 PHE A 394 VAL A 395 SITE 2 AC2 7 THR A 569 PRO A 570 LEU A 571 SITE 1 AC3 6 ASN A 578 VAL A 580 HIS A 584 SER A 587 SITE 2 AC3 6 HIS A 670 HOH A2156 SITE 1 AC4 7 ARG A 439 PRO A 441 HIS A 584 TYR A 585 SITE 2 AC4 7 HOH A2015 HOH A2157 HOH A2158 SITE 1 AC5 11 HIS A 435 ASN A 437 ARG A 439 ASN A 451 SITE 2 AC5 11 GLU A 462 TYR A 585 ASP A 586 NAG A1691 SITE 3 AC5 11 HOH A2092 HOH A2159 HOH A2160 SITE 1 AC6 11 ARG A 439 GLU A 462 ARG A 464 GLY A 617 SITE 2 AC6 11 SER A 618 GLU A 619 GAL A1690 HOH A2160 SITE 3 AC6 11 HOH A2161 HOH A2162 HOH A2163
CRYST1 108.450 43.650 63.900 90.00 105.82 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009221 0.000000 0.002613 0.00000
SCALE2 0.000000 0.022910 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016266 0.00000