10 20 30 40 50 60 70 80 2WSV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 10-SEP-09 2WSV
TITLE GALECTIN DOMAIN OF PORCINE ADENOVIRUS TYPE 4 NADC-1 ISOLATE TITLE 2 FIBRE COMPLEXED WITH LACTOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FIBER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GALECTIN DOMAIN, RESIDUES 393-703; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE ADENOVIRUS 4; SOURCE 3 ORGANISM_TAXID: 35267; SOURCE 4 VARIANT: NADC-1 ISOLATE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28C
KEYWDS TANDEM-REPEAT-TYPE, VIRAL PROTEIN, CARBOHYDRATE RECOGNITION DOMAIN
EXPDTA X-RAY DIFFRACTION
AUTHOR P.GUARDADO-CALVO,E.M.MUNOZ,A.L.LLAMAS-SAIZ,G.C.FOX,J.N.GLASGOW, AUTHOR 2 M.J.VAN RAAIJ
REVDAT 3 06-APR-11 2WSV 1 REMARK REVDAT 2 29-SEP-10 2WSV 1 JRNL REVDAT 1 11-AUG-10 2WSV 0
JRNL AUTH P.GUARDADO-CALVO,E.M.MUNOZ,A.L.LLAMAS-SAIZ,G.C.FOX,R.KAHN, JRNL AUTH 2 D.T.CURIEL,J.N.GLASGOW,M.J.VAN RAAIJ JRNL TITL CRYSTALLOGRAPHIC STRUCTURE OF PORCINE ADENOVIRUS 4 FIBRE 2 JRNL TITL 2 HEAD AND GALECTIN DOMAINS. JRNL REF J.VIROL. V. 84 10558 2010 JRNL REFN ISSN 0022-538X JRNL PMID 20686025 JRNL DOI 10.1128/JVI.00997-10
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.B.KLEIBOEKER REMARK 1 TITL SEQUENCE ANALYSIS OF THE FIBER GENOMIC REGION OF A PORCINE REMARK 1 TITL 2 ADENOVIRUS PREDICTS A NOVEL FIBER PROTEIN. REMARK 1 REF VIRUS RES. V. 39 299 1995 REMARK 1 REFN ISSN 0168-1702 REMARK 1 PMID 8837892 REMARK 1 DOI 10.1016/0168-1702(95)00079-8 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.P.L.PAUL,M.EVERTS,J.N.GLASGOW,P.DENT,P.B.FISHER, REMARK 1 AUTH 2 I.V.ULASOV,M.S.LESNIAK,M.A.STOFF-KHALILI,J.C.ROTH, REMARK 1 AUTH 3 M.A.PREUSS,C.M.F.DIRVEN,M.L.M.LAMFERS,G.P.SIEGAL,Z.B.ZHU, REMARK 1 AUTH 4 D.T.CURIEL REMARK 1 TITL CHARACTERIZATION OF INFECTIVITY OF KNOB-MODIFIED ADENOVIRAL REMARK 1 TITL 2 VECTORS IN GLIOMA. REMARK 1 REF CANCER BIOL.THER. V. 7 786 2008 REMARK 1 REFN ISSN 1538-4047 REMARK 1 PMID 18756624 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.GUARDADO-CALVO,A.L.LLAMAS-SAIZ,G.C.FOX,J.N.GLASGOW, REMARK 1 AUTH 2 M.J.VAN RAAIJ REMARK 1 TITL CRYSTALLISATION OF THE HEAD AND GALECTIN-LIKE DOMAINS OF REMARK 1 TITL 2 PORCINE ADENOVIRUS ISOLATE NADC-1 FIBRE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 1149 2009 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 19923738 REMARK 1 DOI 10.1107/S1744309109038287
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.66 REMARK 3 NUMBER OF REFLECTIONS : 20006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18498 REMARK 3 R VALUE (WORKING SET) : 0.18252 REMARK 3 FREE R VALUE : 0.22752 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.2 REMARK 3 FREE R VALUE TEST SET COUNT : 1087 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.000 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.108 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2873 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.244 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.296 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.951 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.80 REMARK 3 B22 (A**2) : -1.41 REMARK 3 B33 (A**2) : -0.68 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -2.32 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2491 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1671 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3412 ; 1.309 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4079 ; 0.790 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 6.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;35.013 ;23.704 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 379 ;13.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.684 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2714 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 487 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 375 ; 0.200 ; 0.020 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1590 ; 0.196 ; 0.020 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1149 ; 0.173 ; 0.020 REMARK 3 NON-BONDED TORSION OTHERS (A): 1316 ; 0.084 ; 0.020 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 160 ; 0.134 ; 0.020 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.260 ; 0.020 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.218 ; 0.020 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.085 ; 0.020 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1518 ; 2.072 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 595 ; 0.741 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2483 ; 2.950 ; 7.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 973 ; 3.265 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 929 ; 4.356 ; 9.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 386 A 391 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8450 -3.0430 35.8170 REMARK 3 T TENSOR REMARK 3 T11: 0.3827 T22: 0.4176 REMARK 3 T33: 0.3466 T12: 0.1221 REMARK 3 T13: -0.0776 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 0.8370 L22: 13.4664 REMARK 3 L33: 9.7021 L12: 2.1346 REMARK 3 L13: -2.7851 L23: -8.9582 REMARK 3 S TENSOR REMARK 3 S11: 0.1891 S12: 0.1778 S13: 0.2828 REMARK 3 S21: 0.6157 S22: 0.8146 S23: 1.1558 REMARK 3 S31: -0.6546 S32: -0.6758 S33: -1.0037 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 392 A 525 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3880 -13.1830 17.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.0602 REMARK 3 T33: 0.0989 T12: -0.0011 REMARK 3 T13: -0.0309 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.7488 L22: 3.0724 REMARK 3 L33: 3.1110 L12: 0.8346 REMARK 3 L13: -0.1436 L23: 0.1349 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: 0.1131 S13: -0.1571 REMARK 3 S21: -0.0519 S22: -0.0110 S23: -0.4872 REMARK 3 S31: -0.0085 S32: 0.4017 S33: -0.0607 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 526 A 543 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1540 -21.7850 32.9880 REMARK 3 T TENSOR REMARK 3 T11: 0.5661 T22: 0.3363 REMARK 3 T33: 0.2252 T12: -0.0679 REMARK 3 T13: -0.2454 T23: 0.1168 REMARK 3 L TENSOR REMARK 3 L11: 4.5257 L22: 8.6083 REMARK 3 L33: 12.0504 L12: -6.1941 REMARK 3 L13: 1.9349 L23: -1.4691 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.3332 S13: 0.1710 REMARK 3 S21: -0.0716 S22: 0.4209 S23: -0.3189 REMARK 3 S31: -0.1320 S32: 0.0498 S33: -0.4667 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 544 A 684 REMARK 3 ORIGIN FOR THE GROUP (A): -23.4580 -6.7240 12.9460 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0167 REMARK 3 T33: 0.0319 T12: -0.0043 REMARK 3 T13: -0.0147 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.4710 L22: 2.3259 REMARK 3 L33: 3.1663 L12: 0.4427 REMARK 3 L13: 1.9033 L23: 0.7443 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.1432 S13: 0.1478 REMARK 3 S21: 0.0020 S22: -0.0834 S23: 0.2173 REMARK 3 S31: 0.0132 S32: -0.2253 S33: 0.0827 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES WITH TLS ADDED
REMARK 4 REMARK 4 2WSV COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-09. REMARK 100 THE PDBE ID CODE IS EBI-41101.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : SI (111), SI(311) REMARK 200 OPTICS : TWO CYLINDRICAL VERTICAL REMARK 200 FOCUSING PARABOLIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21094 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.00 REMARK 200 RESOLUTION RANGE LOW (A) : 40.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.5 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.40 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.5 REMARK 200 R MERGE FOR SHELL (I) : 0.32 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WSU, CHAIN A REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.1 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS-HCL PH 8.0, 1 MM EDTA, REMARK 280 28% (W/V) POLY-ETHYLENE GLYCOL 3350, 100 MM SODIUM NITRATE, REMARK 280 5 MM DITHIOTHREITOL, 70 MM LACTOSE
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.31000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.31000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 361 REMARK 465 GLY A 362 REMARK 465 SER A 363 REMARK 465 SER A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 SER A 371 REMARK 465 SER A 372 REMARK 465 GLY A 373 REMARK 465 LEU A 374 REMARK 465 VAL A 375 REMARK 465 PRO A 376 REMARK 465 ARG A 377 REMARK 465 GLY A 378 REMARK 465 SER A 379 REMARK 465 HIS A 380 REMARK 465 MET A 381 REMARK 465 ALA A 382 REMARK 465 SER A 383 REMARK 465 MET A 384 REMARK 465 THR A 385 REMARK 465 PRO A 685 REMARK 465 ASP A 686 REMARK 465 THR A 687 REMARK 465 PRO A 688 REMARK 465 VAL A 689 REMARK 465 PHE A 690 REMARK 465 SER A 691 REMARK 465 THR A 692 REMARK 465 ALA A 693 REMARK 465 GLY A 694 REMARK 465 VAL A 695 REMARK 465 SER A 696 REMARK 465 LYS A 697 REMARK 465 VAL A 698 REMARK 465 TYR A 699 REMARK 465 PRO A 700 REMARK 465 GLN A 701 REMARK 465 ILE A 702 REMARK 465 LEU A 703
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 394 -31.92 -133.25 REMARK 500 ASP A 485 15.59 -150.22 REMARK 500 ARG A 559 8.16 81.27 REMARK 500 ARG A 640 -168.47 -104.92 REMARK 500 LYS A 650 -7.30 76.57 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LBT A1685 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A1686 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A1687 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LBT A1688
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WS0 RELATED DB: PDB REMARK 900 SEMI-SYNTHETIC ANALOGUE OF HUMAN INSULIN REMARK 900 NMEALAB26-INSULIN AT PH 7.5 REMARK 900 RELATED ID: 2WT1 RELATED DB: PDB REMARK 900 GALECTIN DOMAIN OF PORCINE ADENOVIRUS TYPE 4 REMARK 900 NADC-1 ISOLATE FIBRE COMPLEXED WITH LACTO REMARK 900 -N-NEO-TETRAOSE REMARK 900 RELATED ID: 2WSU RELATED DB: PDB REMARK 900 GALECTIN DOMAIN OF PORCINE ADENOVIRUS TYPE 4 REMARK 900 NADC-1 ISOLATE FIBRE REMARK 900 RELATED ID: 2WST RELATED DB: PDB REMARK 900 HEAD DOMAIN OF PORCINE ADENOVIRUS TYPE 4 REMARK 900 NADC-1 ISOLATE FIBRE REMARK 900 RELATED ID: 2WT2 RELATED DB: PDB REMARK 900 GALECTIN DOMAIN OF PORCINE ADENOVIRUS TYPE 4 REMARK 900 NADC-1 ISOLATE FIBRE COMPLEXED WITH TRI( REMARK 900 N-ACETYL-LACTOSAMINE)
DBREF 2WSV A 393 703 UNP Q83467 Q83467_ADEP4 393 703
SEQADV 2WSV MET A 361 UNP Q83467 EXPRESSION TAG SEQADV 2WSV GLY A 362 UNP Q83467 EXPRESSION TAG SEQADV 2WSV SER A 363 UNP Q83467 EXPRESSION TAG SEQADV 2WSV SER A 364 UNP Q83467 EXPRESSION TAG SEQADV 2WSV HIS A 365 UNP Q83467 EXPRESSION TAG SEQADV 2WSV HIS A 366 UNP Q83467 EXPRESSION TAG SEQADV 2WSV HIS A 367 UNP Q83467 EXPRESSION TAG SEQADV 2WSV HIS A 368 UNP Q83467 EXPRESSION TAG SEQADV 2WSV HIS A 369 UNP Q83467 EXPRESSION TAG SEQADV 2WSV HIS A 370 UNP Q83467 EXPRESSION TAG SEQADV 2WSV SER A 371 UNP Q83467 EXPRESSION TAG SEQADV 2WSV SER A 372 UNP Q83467 EXPRESSION TAG SEQADV 2WSV GLY A 373 UNP Q83467 EXPRESSION TAG SEQADV 2WSV LEU A 374 UNP Q83467 EXPRESSION TAG SEQADV 2WSV VAL A 375 UNP Q83467 EXPRESSION TAG SEQADV 2WSV PRO A 376 UNP Q83467 EXPRESSION TAG SEQADV 2WSV ARG A 377 UNP Q83467 EXPRESSION TAG SEQADV 2WSV GLY A 378 UNP Q83467 EXPRESSION TAG SEQADV 2WSV SER A 379 UNP Q83467 EXPRESSION TAG SEQADV 2WSV HIS A 380 UNP Q83467 EXPRESSION TAG SEQADV 2WSV MET A 381 UNP Q83467 EXPRESSION TAG SEQADV 2WSV ALA A 382 UNP Q83467 EXPRESSION TAG SEQADV 2WSV SER A 383 UNP Q83467 EXPRESSION TAG SEQADV 2WSV MET A 384 UNP Q83467 EXPRESSION TAG SEQADV 2WSV THR A 385 UNP Q83467 EXPRESSION TAG SEQADV 2WSV GLY A 386 UNP Q83467 EXPRESSION TAG SEQADV 2WSV GLY A 387 UNP Q83467 EXPRESSION TAG SEQADV 2WSV GLN A 388 UNP Q83467 EXPRESSION TAG SEQADV 2WSV GLN A 389 UNP Q83467 EXPRESSION TAG SEQADV 2WSV GLY A 390 UNP Q83467 EXPRESSION TAG SEQADV 2WSV ARG A 391 UNP Q83467 EXPRESSION TAG SEQADV 2WSV ILE A 392 UNP Q83467 EXPRESSION TAG
SEQRES 1 A 343 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 343 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 343 GLY GLN GLN GLY ARG ILE PRO PHE VAL LEU PRO LEU PRO SEQRES 4 A 343 ASP GLY VAL PRO THR GLY ALA SER ILE VAL LEU GLU GLY SEQRES 5 A 343 THR LEU THR PRO SER ALA VAL PHE PHE THR LEU ASP LEU SEQRES 6 A 343 VAL THR GLY PRO ALA SER LEU ALA LEU HIS PHE ASN VAL SEQRES 7 A 343 ARG LEU PRO LEU GLU GLY GLU LYS HIS ILE VAL CYS ASN SEQRES 8 A 343 SER ARG GLU GLY SER SER ASN TRP GLY GLU GLU VAL ARG SEQRES 9 A 343 PRO GLN GLU PHE PRO PHE GLU ARG GLU LYS PRO PHE VAL SEQRES 10 A 343 LEU VAL ILE VAL ILE GLN SER ASP THR TYR GLN ILE THR SEQRES 11 A 343 VAL ASN GLY LYS PRO LEU VAL ASP PHE PRO GLN ARG LEU SEQRES 12 A 343 GLN GLY ILE THR ARG ALA SER LEU SER GLY ASP LEU VAL SEQRES 13 A 343 PHE THR ARG LEU THR MET TYR PRO PRO GLY ASP PRO ARG SEQRES 14 A 343 PRO THR THR LEU LEU PRO PRO PRO ALA ALA PRO LEU ASP SEQRES 15 A 343 VAL ILE PRO ASP ALA TYR VAL LEU ASN LEU PRO THR GLY SEQRES 16 A 343 LEU THR PRO ARG THR LEU LEU THR VAL THR GLY THR PRO SEQRES 17 A 343 THR PRO LEU ALA GLU PHE PHE ILE VAL ASN LEU VAL TYR SEQRES 18 A 343 ASP LEU HIS TYR ASP SER LYS ASN VAL ALA LEU HIS PHE SEQRES 19 A 343 ASN VAL GLY PHE THR SER ASP SER LYS GLY HIS ILE ALA SEQRES 20 A 343 CYS ASN ALA ARG MET ASN GLY THR TRP GLY SER GLU ILE SEQRES 21 A 343 THR VAL SER ASP PHE PRO PHE GLN ARG GLY LYS PRO PHE SEQRES 22 A 343 THR LEU GLN ILE LEU THR ARG GLU ALA ASP PHE GLN VAL SEQRES 23 A 343 LEU VAL ASP LYS GLN PRO LEU THR GLN PHE GLN TYR ARG SEQRES 24 A 343 LEU LYS GLU LEU ASP GLN ILE LYS TYR VAL HIS MET PHE SEQRES 25 A 343 GLY HIS VAL VAL GLN THR HIS LEU GLU HIS GLN VAL PRO SEQRES 26 A 343 ASP THR PRO VAL PHE SER THR ALA GLY VAL SER LYS VAL SEQRES 27 A 343 TYR PRO GLN ILE LEU
HET LBT A1685 23 HET NO3 A1686 4 HET NO3 A1687 4 HET LBT A1688 23
HETNAM LBT ALPHA-LACTOSE HETNAM NO3 NITRATE ION
FORMUL 2 LBT 2(C12 H22 O11) FORMUL 3 NO3 2(N O3 1-) FORMUL 4 HOH *184(H2 O)
HELIX 1 1 GLU A 662 ILE A 666 5 5
SHEET 1 AA 5 VAL A 395 PRO A 397 0 SHEET 2 AA 5 ARG A 508 SER A 512 -1 O ALA A 509 N LEU A 396 SHEET 3 AA 5 PHE A 420 VAL A 426 -1 O THR A 422 N SER A 512 SHEET 4 AA 5 LEU A 432 ARG A 439 -1 N ALA A 433 O LEU A 425 SHEET 5 AA 5 HIS A 447 ARG A 453 -1 O HIS A 447 N ARG A 439 SHEET 1 AB 5 PRO A 495 PRO A 500 0 SHEET 2 AB 5 THR A 486 VAL A 491 -1 O TYR A 487 N PHE A 499 SHEET 3 AB 5 LEU A 478 ILE A 482 -1 O VAL A 479 N THR A 490 SHEET 4 AB 5 SER A 407 LEU A 414 -1 O ILE A 408 N ILE A 480 SHEET 5 AB 5 LEU A 515 TYR A 523 -1 N VAL A 516 O THR A 413 SHEET 1 AC 6 VAL A 549 ASN A 551 0 SHEET 2 AC 6 TYR A 668 PHE A 672 -1 O VAL A 669 N LEU A 550 SHEET 3 AC 6 PHE A 575 VAL A 580 -1 O ILE A 576 N PHE A 672 SHEET 4 AC 6 VAL A 590 VAL A 596 -1 N ALA A 591 O LEU A 579 SHEET 5 AC 6 ILE A 606 ARG A 611 -1 O ALA A 607 N ASN A 595 SHEET 6 AC 6 ILE A 620 VAL A 622 -1 O ILE A 620 N CYS A 608 SHEET 1 AD 5 GLN A 651 GLN A 657 0 SHEET 2 AD 5 ASP A 643 VAL A 648 -1 O PHE A 644 N PHE A 656 SHEET 3 AD 5 LEU A 635 THR A 639 -1 O GLN A 636 N LEU A 647 SHEET 4 AD 5 LEU A 561 PRO A 568 -1 O LEU A 562 N ILE A 637 SHEET 5 AD 5 VAL A 675 GLN A 683 -1 N VAL A 676 O THR A 567
SITE 1 AC1 5 ASN A 609 TRP A 616 GLY A 617 GLU A 619 SITE 2 AC1 5 HOH A2181 SITE 1 AC2 8 THR A 415 PRO A 416 SER A 417 ASP A 546 SITE 2 AC2 8 ALA A 547 TYR A 548 VAL A 549 HOH A2182 SITE 1 AC3 6 PRO A 393 PHE A 394 VAL A 395 THR A 569 SITE 2 AC3 6 PRO A 570 LEU A 571 SITE 1 AC4 13 HIS A 435 ASN A 437 ARG A 439 ASN A 451 SITE 2 AC4 13 TRP A 459 GLU A 461 GLU A 462 ARG A 464 SITE 3 AC4 13 HOH A2025 HOH A2028 HOH A2029 HOH A2183 SITE 4 AC4 13 HOH A2184
CRYST1 114.620 38.780 70.190 90.00 93.53 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008724 0.000000 0.000538 0.00000
SCALE2 0.000000 0.025786 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014274 0.00000