10 20 30 40 50 60 70 80 2WNA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 07-JUL-09 2WNA
TITLE CRYSTAL STRUCTURE OF THE GNA 3'-G(BR)CGCGC-2'
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GNA; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: SYNTHETIC GLYCOL NUCLEIC ACID, COMPND 5 3'-(S)-((ZGU)P(ZBC)P(ZGU)P(ZCY)P(ZGU)P(ZCY))-2'
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606
KEYWDS RNA, GNA, NUCLEIC ACID, GLYCOL NUCLEIC ACID, WATSON-CRICK KEYWDS 2 BASE PAIR
EXPDTA X-RAY DIFFRACTION
AUTHOR M.K.SCHLEGEL,L.-O.ESSEN,E.MEGGERS
REVDAT 2 02-MAR-10 2WNA 1 REMARK REVDAT 1 16-FEB-10 2WNA 0
JRNL AUTH M.K.SCHLEGEL,L.-O.ESSEN,E.MEGGERS JRNL TITL ATOMIC RESOLUTION DUPLEX STRUCTURE OF THE JRNL TITL 2 SIMPLIFIED NUCLEIC ACID GNA. JRNL REF CHEM.COMMUN.(CAMB.) V. 46 1094 2010 JRNL REFN ISSN 1359-7345 JRNL PMID 20126724 JRNL DOI 10.1039/B916851F
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.K.SCHLEGEL,L.-O.ESSEN,E.MEGGERS REMARK 1 TITL DUPLEX STRUCTURE OF A MINIMAL NUCLEIC ACID. REMARK 1 REF J.AM.CHEM.SOC. V. 130 8158 2008 REMARK 1 REFN ISSN 0002-7863 REMARK 1 PMID 18529005 REMARK 1 DOI 10.1021/JA802788G
REMARK 2 REMARK 2 RESOLUTION. 0.97 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 97.93 REMARK 3 NUMBER OF REFLECTIONS : 7025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.10648 REMARK 3 R VALUE (WORKING SET) : 0.10503 REMARK 3 FREE R VALUE : 0.12726 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.1 REMARK 3 FREE R VALUE TEST SET COUNT : 533 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.965 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.990 REMARK 3 REFLECTION IN BIN (WORKING SET) : 423 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.161 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.169 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 4.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.688 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51 REMARK 3 B22 (A**2) : 0.07 REMARK 3 B33 (A**2) : -0.57 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.020 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.021 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.011 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.434 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 150 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 53 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 220 ; 3.530 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 118 ; 0.698 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 6 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 64 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 23 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 11 ; 0.081 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 47 ; 0.296 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 42 ; 0.265 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 30 ; 0.076 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 46 ; 0.450 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.143 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.144 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.449 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 58 ; 0.321 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 218 ; 2.224 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 203 ; 2.798 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 405 ; 1.253 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 59 ;10.469 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 184 ; 5.229 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. GNA DUPLEX OF TYPE N FORMED WITH SYMMETRY- REMARK 3 EQUIVALENT MOLECULE
REMARK 4 REMARK 4 2WNA COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-09. REMARK 100 THE PDBE ID CODE IS EBI-40348.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91826 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30224 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.96 REMARK 200 RESOLUTION RANGE LOW (A) : 21.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.99 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.13 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: LOW AND HIGH RESOLUTION DATA MERGED FROM SAME REMARK 200 CRYSTAL. DATA RECORDING OCCURED AT PEAK WAVELENGTH OF REMARK 200 BROMINE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 12.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 2 MM G(BR)CGCGC, 10% REMARK 280 2-METHYL-2,4-PENTANEDIOL, 40 MM SODIUM CACODYLATE (PH 5.5), REMARK 280 20 MM COBALT HEXAMINE, 80 MM SODIUM CHLORIDE, 20 MM REMARK 280 MAGNESIUM CHLORIDE RESERVOIR: 35 % MPD
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 14.33500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 14.33500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 10.21000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 10.21000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.33500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 10.21000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 21.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 14.33500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 10.21000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 21.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 61.26000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 14.33500
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ZGU A 1 O1P O2P
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HN63 NCO A 1001 O HOH A 2047 0.95 REMARK 500 N6 NCO A 1001 O HOH A 2047 1.26 REMARK 500 HN62 NCO A 1001 O HOH A 2047 1.29 REMARK 500 N1 NCO A 1001 O HOH A 2052 1.99 REMARK 500 REMARK 500 REMARK: NULL
REMARK 600 REMARK 600 HETEROGEN REMARK 600 (S)-1'-(2',3'-DIHYDROXYPROPYL)-5-BROMO-CYTOSINE (ZBC): ZCY REMARK 600 ANALOG BEARING A BROMINE AT C5 REMARK 600 COBALT HEXAMMINE(III) (NCO): COBALT HEXAMINNE COMPLEXES REMARK 600 SHOW DISORDER, CHARGE +3 REMARK 600 MAGNESIUM ION (MG): CHARGE +2
REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NCO A 1001 REMARK 615 NCO A 1002
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NCO A1001 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NCO A1001 N6 REMARK 620 2 NCO A1001 N1 94.4 REMARK 620 3 NCO A1001 N2 85.9 178.2 REMARK 620 4 NCO A1001 N4 176.6 88.9 90.7 REMARK 620 5 NCO A1001 N5 90.3 90.8 91.0 89.1 REMARK 620 6 NCO A1001 N3 90.2 90.3 88.0 90.3 178.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NCO A1002 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NCO A1002 N1 REMARK 620 2 NCO A1002 N6 92.5 REMARK 620 3 NCO A1002 N2 178.8 86.3 REMARK 620 4 NCO A1002 N3 92.3 87.6 87.3 REMARK 620 5 NCO A1002 N4 89.9 175.4 91.2 88.4 REMARK 620 6 NCO A1002 N5 88.4 93.3 92.0 178.8 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2009 O REMARK 620 2 HOH A2010 O 94.8 REMARK 620 3 HOH A2006 O 164.5 97.0 REMARK 620 4 HOH A2005 O 102.7 72.6 90.4 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1003
REMARK 999 REMARK 999 SEQUENCE REMARK 999 CYTOSINE A2 IS BROMINATED AT C5 FOR SAD ANALYSIS
DBREF 2WNA A 1 6 PDB 2WNA 2WNA 1 6
SEQRES 1 A 6 ZGU ZBC ZGU ZCY ZGU ZCY
MODRES 2WNA ZGU A 1 G (S)-1'-(2',3'-DIHYDROXYPROPYL)-GUANINE MODRES 2WNA ZBC A 2 C (S)-1'-(2',3'-DIHYDROXYPROPYL)-5-BROMO-CYTOSINE MODRES 2WNA ZGU A 3 G (S)-1'-(2',3'-DIHYDROXYPROPYL)-GUANINE MODRES 2WNA ZCY A 4 C (S)-1'-(2',3'-DIHYDROXYPROPYL)-CYTOSINE MODRES 2WNA ZGU A 5 G (S)-1'-(2',3'-DIHYDROXYPROPYL)-GUANINE MODRES 2WNA ZCY A 6 C (S)-1'-(2',3'-DIHYDROXYPROPYL)-CYTOSINE
HET ZGU A 1 25 HET ZBC A 2 25 HET ZGU A 3 28 HET ZCY A 4 25 HET ZGU A 5 28 HET ZCY A 6 25 HET NCO A1001 50 HET NCO A1002 50 HET MG A1003 1
HETNAM ZBC (2S)-3-(4-AMINO-5-BROMO-2-OXOPYRIMIDIN-1(2H)- HETNAM 2 ZBC YL)-2-HYDROXYPROPYL DIHYDROGEN PHOSPHATE HETNAM ZCY (S)-1'-(2',3'-DIHYDROXYPROPYL)-CYTOSINE HETNAM ZGU (S)-1'-(2',3'-DIHYDROXYPROPYL)-GUANINE HETNAM NCO COBALT HEXAMMINE(III) HETNAM MG MAGNESIUM ION
HETSYN ZBC (S)-1'-(2',3'-DIHYDROXYPROPYL)-5-BROMO- HETSYN 2 ZBC CYTOSINE
FORMUL 2 ZBC C7 H11 BR N3 O6 P FORMUL 3 ZCY 2(C7 H12 N3 O6 P) FORMUL 4 ZGU 3(C8 H12 N5 O6 P) FORMUL 5 NCO 2(CO H18 N6 3+) FORMUL 6 MG MG 2+ FORMUL 7 HOH *58(H2 O)
LINK O2G ZGU A 1 P ZBC A 2 1555 1555 1.58 LINK O2G ZBC A 2 P ZGU A 3 1555 1555 1.59 LINK O2G ZGU A 3 P ZCY A 4 1555 1555 1.59 LINK O2G ZCY A 4 P ZGU A 5 1555 1555 1.58 LINK O2G ZGU A 5 P ZCY A 6 1555 1555 1.60 LINK MG MG A1003 O HOH A2010 1555 1555 2.09 LINK MG MG A1003 O HOH A2006 1555 4576 2.30 LINK MG MG A1003 O HOH A2005 1555 1555 1.85 LINK MG MG A1003 O HOH A2009 1555 1555 2.13
SITE 1 AC1 11 ZGU A 3 ZCY A 6 HOH A2023 HOH A2034 SITE 2 AC1 11 HOH A2035 HOH A2046 HOH A2047 HOH A2049 SITE 3 AC1 11 HOH A2050 HOH A2051 HOH A2052 SITE 1 AC2 12 ZBC A 2 ZGU A 5 ZCY A 6 HOH A2002 SITE 2 AC2 12 HOH A2020 HOH A2021 HOH A2053 HOH A2054 SITE 3 AC2 12 HOH A2055 HOH A2056 HOH A2057 HOH A2058 SITE 1 AC3 5 HOH A2005 HOH A2006 HOH A2007 HOH A2009 SITE 2 AC3 5 HOH A2010
CRYST1 20.420 42.000 28.670 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.048972 0.000000 0.000000 0.00000
SCALE2 0.000000 0.023810 0.000000 0.00000
SCALE3 0.000000 0.000000 0.034880 0.00000