10 20 30 40 50 60 70 80 2WIA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL TRANSPORT 09-MAY-09 2WIA
TITLE CRYSTAL STRUCTURES OF THE N-TERMINAL INTRACELLULAR DOMAIN OF TITLE 2 FEOB FROM KLEBSIELLA PNEUMONIAE IN APO FORM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROUS IRON TRANSPORT PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL INTRACELLULAR DOMAIN, RESIDUES 1-267; COMPND 5 SYNONYM: FEOB; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)
KEYWDS SIGNAL TRANSDUCTION, FERROUS IRON TRANSPORT, MEMBRANE KEYWDS 2 PROTEIN, METAL TRANSPORT, G PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR K.-W.HUNG,Y.-W.CHANG,J.-H.CHEN,Y.-C.CHEN,Y.-J.SUN, AUTHOR 2 C.-D.HSIAO,T.-H.HUANG
REVDAT 1 19-MAY-10 2WIA 0
JRNL AUTH K.-W.HUNG,Y.-W.CHANG,E.T.ENG,J.-H.CHEN,Y.-C.CHEN, JRNL AUTH 2 Y.-J.SUN,C.-D.HSIAO,G.DONG,K.A.SPASOV,V.M.UNGER, JRNL AUTH 3 T.-H.HUANG JRNL TITL STRUCTURAL FOLD, CONSERVATION AND FE(II) BINDING JRNL TITL 2 OF THE INTRACELLULAR DOMAIN OF PROKARYOTE FEOB. JRNL REF J.STRUCT.BIOL. V. 170 501 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20123128 JRNL DOI 10.1016/J.JSB.2010.01.017
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.CHEN,H.CHANG,Y.LAI,C.PAN,S.TSAI,H.PENG REMARK 1 TITL SEQUENCING AND ANALYSIS OF THE LARGE VIRULENCE REMARK 1 TITL 2 PLASMID PLVPK OF KLEBSIELLA PNEUMONIAE CG43. REMARK 1 REF GENE V. 337 189 2004 REMARK 1 REFN ISSN 0378-1119 REMARK 1 PMID 15276215 REMARK 1 DOI 10.1016/J.GENE.2004.05.008
REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 59095.74 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.000000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 16910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 817 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.2 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2375 REMARK 3 BIN R VALUE (WORKING SET) : 0.196 REMARK 3 BIN FREE R VALUE : 0.191 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.3 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3689 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.77 REMARK 3 B22 (A**2) : -5.77 REMARK 3 B33 (A**2) : 11.53 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.031 REMARK 3 BOND ANGLES (DEGREES) : 2.7 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.4 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.78 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.14 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.92 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.77 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.52 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 38.1939 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED SIDE CHAIN OF REMARK 3 RESIDUES K3, Q51, Q69, T70, E74, E126, K127, Q128, Q129, R131, REMARK 3 R152, E173, L187, D224, L226, D227, I228, L233, S234, D235, REMARK 3 E236, L242 IN CHAIN A, AND K3, Q51, T70, E74, I124, E126, K127, REMARK 3 Q128, R131, R152, E173, L187, Q190, Q191, S193, Q195, I196, REMARK 3 I213, Y214, R216, K225, L226, D227, L233, D235, I237, D238, REMARK 3 L242 IN CHAIN B ARE DISORDERED. WHOLE RESIDUE OF T65 TO S68, REMARK 3 V149 TO T151 IN CHAIN A, AND T65 TO Q69, V149 TO T151 IN CHAIN REMARK 3 B ARE DISORDERED.
REMARK 4 REMARK 4 2WIA COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-09. REMARK 100 THE PDBE ID CODE IS EBI-39748.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18109 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.45 REMARK 200 RESOLUTION RANGE LOW (A) : 25.13 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.6 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.7 REMARK 200 R MERGE FOR SHELL (I) : 0.28 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: STRUCTURE OF FEOB IN GMPPNP STATE REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.2 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.5, 30% PEG4000, REMARK 280 200 MM MGCL2
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.22850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.22850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.22850 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 84.20400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 42.10200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 72.92280 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A1262 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B1262 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 65 REMARK 465 ILE A 66 REMARK 465 SER A 67 REMARK 465 SER A 68 REMARK 465 VAL A 149 REMARK 465 SER A 150 REMARK 465 THR A 151 REMARK 465 ASN A 261 REMARK 465 THR A 262 REMARK 465 LEU A 263 REMARK 465 THR A 264 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 465 PRO A 267 REMARK 465 THR B 65 REMARK 465 ILE B 66 REMARK 465 SER B 67 REMARK 465 SER B 68 REMARK 465 GLN B 69 REMARK 465 VAL B 149 REMARK 465 SER B 150 REMARK 465 THR B 151 REMARK 465 ASN B 261 REMARK 465 THR B 262 REMARK 465 LEU B 263 REMARK 465 THR B 264 REMARK 465 ALA B 265 REMARK 465 GLU B 266 REMARK 465 PRO B 267
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLN A 51 CG CD OE1 NE2 REMARK 470 GLN A 69 CG CD OE1 NE2 REMARK 470 THR A 70 OG1 CG2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 GLN A 128 CG CD OE1 NE2 REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LEU A 187 CG CD1 CD2 REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 LEU A 226 CG CD1 CD2 REMARK 470 ASP A 227 CG OD1 OD2 REMARK 470 ILE A 228 CG1 CG2 CD1 REMARK 470 LEU A 233 CG CD1 CD2 REMARK 470 SER A 234 OG REMARK 470 ASP A 235 CG OD1 OD2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 LEU A 242 CG CD1 CD2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLN B 51 CG CD OE1 NE2 REMARK 470 THR B 70 OG1 CG2 REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 ILE B 124 CG1 CG2 CD1 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 GLN B 128 CG CD OE1 NE2 REMARK 470 GLN B 129 CG CD OE1 NE2 REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 152 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 LEU B 187 CG CD1 CD2 REMARK 470 GLN B 190 CG CD OE1 NE2 REMARK 470 GLN B 191 CG CD OE1 NE2 REMARK 470 SER B 193 OG REMARK 470 GLN B 195 CG CD OE1 NE2 REMARK 470 ILE B 196 CG1 CG2 CD1 REMARK 470 ILE B 213 CG1 CG2 CD1 REMARK 470 TYR B 214 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 LEU B 226 CG CD1 CD2 REMARK 470 ASP B 227 CG OD1 OD2 REMARK 470 LEU B 233 CG CD1 CD2 REMARK 470 ASP B 235 CG OD1 OD2 REMARK 470 ILE B 237 CG1 CG2 CD1 REMARK 470 ASP B 238 CG OD1 OD2 REMARK 470 LEU B 242 CG CD1 CD2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 55 CB VAL A 55 CG2 0.137 REMARK 500 PRO A 240 CD PRO A 240 N 0.103 REMARK 500 ILE A 252 CB ILE A 252 CG2 0.222 REMARK 500 TYR B 103 C TYR B 103 O 0.136 REMARK 500 GLN B 191 C GLN B 191 O 0.114 REMARK 500 GLU B 236 C ILE B 237 N -0.292 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 SER A 71 O - C - N ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ILE A 237 CA - C - N ANGL. DEV. = 16.7 DEGREES REMARK 500 ILE A 237 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP A 239 C - N - CA ANGL. DEV. = 32.2 DEGREES REMARK 500 PRO A 240 CA - N - CD ANGL. DEV. = -14.7 DEGREES REMARK 500 ASP A 239 O - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 PRO A 240 C - N - CD ANGL. DEV. = 16.4 DEGREES REMARK 500 LEU B 72 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ASP B 73 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP B 94 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 94 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP B 164 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 164 CB - CG - OD2 ANGL. DEV. = -11.4 DEGREES REMARK 500 HIS B 176 CA - C - O ANGL. DEV. = 18.4 DEGREES REMARK 500 PRO B 180 C - N - CD ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP B 221 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 238 C - N - CA ANGL. DEV. = -17.2 DEGREES REMARK 500 PRO B 240 CA - N - CD ANGL. DEV. = -9.7 DEGREES REMARK 500 PRO B 240 C - N - CA ANGL. DEV. = -14.2 DEGREES REMARK 500 PRO B 240 C - N - CD ANGL. DEV. = 24.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 85 -37.06 -38.17 REMARK 500 ASN A 97 48.30 -140.72 REMARK 500 ARG A 154 -75.19 -46.52 REMARK 500 GLU A 173 78.41 40.48 REMARK 500 GLN A 191 0.64 -65.80 REMARK 500 PRO A 197 155.29 -46.01 REMARK 500 ASP A 221 -38.11 -36.19 REMARK 500 LEU A 230 -7.94 -52.51 REMARK 500 ASP A 235 -76.55 -54.55 REMARK 500 ASP A 238 -137.85 -158.73 REMARK 500 ASN B 120 -164.88 -117.10 REMARK 500 LYS B 127 -44.02 -28.95 REMARK 500 GLN B 128 31.24 -98.23 REMARK 500 GLN B 129 26.58 44.00 REMARK 500 PRO B 197 152.00 -45.05 REMARK 500 ALA B 217 25.25 -79.24 REMARK 500 ALA B 222 83.19 -65.36 REMARK 500 ALA B 223 -46.08 -149.83 REMARK 500 ASP B 227 -60.69 -10.44 REMARK 500 ASP B 238 -159.02 -128.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 237 ASP A 238 54.56 REMARK 500 ASP A 238 ASP A 239 -110.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 69 11.95 REMARK 500 THR A 70 -11.40 REMARK 500 ILE A 237 13.61 REMARK 500 ASP A 238 18.22 REMARK 500 ASP A 239 -23.26 REMARK 500 PRO A 240 13.72 REMARK 500 TYR B 103 -14.43 REMARK 500 ALA B 223 12.32 REMARK 500 ASP B 239 -24.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ALA A 222 21.3 L L OUTSIDE RANGE REMARK 500 GLU A 236 19.5 L L OUTSIDE RANGE REMARK 500 PRO A 240 17.3 L L OUTSIDE RANGE REMARK 500 GLN B 179 22.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1262 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 133 OD2 REMARK 620 2 ASP A 133 OD2 77.0 REMARK 620 3 ASP A 133 OD2 77.0 76.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1262 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 133 OD2 REMARK 620 2 ASP B 133 OD2 62.6 REMARK 620 3 ASP B 133 OD2 63.0 61.7 REMARK 620 N 1 2
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1262
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WIC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF THE N-TERMINAL INTRACELLULAR DOMAIN REMARK 900 OF FEOB FROM KLEBSIELLA PNEUMONIAE IN GMPPNP BINDING STATE REMARK 900 RELATED ID: 2WIB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF THE N-TERMINAL INTRACELLULAR DOMAIN REMARK 900 OF FEOB FROM KLEBSIELLA PNEUMONIAE IN GDP BINDING STATE
DBREF 2WIA A 1 267 UNP A6TF32 A6TF32_KLEP7 1 267 DBREF 2WIA B 1 267 UNP A6TF32 A6TF32_KLEP7 1 267
SEQADV 2WIA GLN A 129 UNP A6TF32 LYS 129 CONFLICT SEQADV 2WIA GLN B 129 UNP A6TF32 LYS 129 CONFLICT
SEQRES 1 A 267 MET GLN LYS LEU THR VAL GLY LEU ILE GLY ASN PRO ASN SEQRES 2 A 267 SER GLY LYS THR THR LEU PHE ASN GLN LEU THR GLY ALA SEQRES 3 A 267 ARG GLN ARG VAL GLY ASN TRP ALA GLY VAL THR VAL GLU SEQRES 4 A 267 ARG LYS GLU GLY ILE PHE ALA THR THR ASP HIS GLN VAL SEQRES 5 A 267 THR LEU VAL ASP LEU PRO GLY THR TYR SER LEU THR THR SEQRES 6 A 267 ILE SER SER GLN THR SER LEU ASP GLU GLN ILE ALA CYS SEQRES 7 A 267 HIS TYR ILE LEU SER GLY ASP ALA ASP MET LEU ILE ASN SEQRES 8 A 267 VAL VAL ASP ALA SER ASN LEU GLU ARG ASN LEU TYR LEU SEQRES 9 A 267 THR LEU GLN LEU LEU GLU LEU GLY ILE PRO CYS VAL VAL SEQRES 10 A 267 ALA LEU ASN MET LEU ASP ILE ALA GLU LYS GLN GLN VAL SEQRES 11 A 267 ARG ILE ASP ILE ASP ALA LEU ALA ALA ARG LEU GLY CYS SEQRES 12 A 267 PRO VAL ILE PRO LEU VAL SER THR ARG GLY ARG GLY ILE SEQRES 13 A 267 GLU ALA LEU LYS ILE ALA LEU ASP ARG HIS GLN ALA ASN SEQRES 14 A 267 SER ASP LEU GLU LEU VAL HIS TYR PRO GLN PRO LEU LEU SEQRES 15 A 267 ARG GLU ALA ASP LEU LEU ALA GLN GLN MET SER ALA GLN SEQRES 16 A 267 ILE PRO PRO ARG GLN ARG ARG TRP LEU GLY LEU GLN MET SEQRES 17 A 267 LEU GLU GLY ASP ILE TYR SER ARG ALA TYR ALA GLY ASP SEQRES 18 A 267 ALA ALA ASP LYS LEU ASP ILE ALA LEU ALA ASN LEU SER SEQRES 19 A 267 ASP GLU ILE ASP ASP PRO ALA LEU HIS ILE ALA ASP ALA SEQRES 20 A 267 ARG TYR GLN THR ILE ALA ALA ILE CYS ASP ALA VAL SER SEQRES 21 A 267 ASN THR LEU THR ALA GLU PRO SEQRES 1 B 267 MET GLN LYS LEU THR VAL GLY LEU ILE GLY ASN PRO ASN SEQRES 2 B 267 SER GLY LYS THR THR LEU PHE ASN GLN LEU THR GLY ALA SEQRES 3 B 267 ARG GLN ARG VAL GLY ASN TRP ALA GLY VAL THR VAL GLU SEQRES 4 B 267 ARG LYS GLU GLY ILE PHE ALA THR THR ASP HIS GLN VAL SEQRES 5 B 267 THR LEU VAL ASP LEU PRO GLY THR TYR SER LEU THR THR SEQRES 6 B 267 ILE SER SER GLN THR SER LEU ASP GLU GLN ILE ALA CYS SEQRES 7 B 267 HIS TYR ILE LEU SER GLY ASP ALA ASP MET LEU ILE ASN SEQRES 8 B 267 VAL VAL ASP ALA SER ASN LEU GLU ARG ASN LEU TYR LEU SEQRES 9 B 267 THR LEU GLN LEU LEU GLU LEU GLY ILE PRO CYS VAL VAL SEQRES 10 B 267 ALA LEU ASN MET LEU ASP ILE ALA GLU LYS GLN GLN VAL SEQRES 11 B 267 ARG ILE ASP ILE ASP ALA LEU ALA ALA ARG LEU GLY CYS SEQRES 12 B 267 PRO VAL ILE PRO LEU VAL SER THR ARG GLY ARG GLY ILE SEQRES 13 B 267 GLU ALA LEU LYS ILE ALA LEU ASP ARG HIS GLN ALA ASN SEQRES 14 B 267 SER ASP LEU GLU LEU VAL HIS TYR PRO GLN PRO LEU LEU SEQRES 15 B 267 ARG GLU ALA ASP LEU LEU ALA GLN GLN MET SER ALA GLN SEQRES 16 B 267 ILE PRO PRO ARG GLN ARG ARG TRP LEU GLY LEU GLN MET SEQRES 17 B 267 LEU GLU GLY ASP ILE TYR SER ARG ALA TYR ALA GLY ASP SEQRES 18 B 267 ALA ALA ASP LYS LEU ASP ILE ALA LEU ALA ASN LEU SER SEQRES 19 B 267 ASP GLU ILE ASP ASP PRO ALA LEU HIS ILE ALA ASP ALA SEQRES 20 B 267 ARG TYR GLN THR ILE ALA ALA ILE CYS ASP ALA VAL SER SEQRES 21 B 267 ASN THR LEU THR ALA GLU PRO
HET MG A1262 1 HET MG B1262 1
HETNAM MG MAGNESIUM ION
FORMUL 3 MG 2(MG 2+) FORMUL 4 HOH *198(H2 O)
HELIX 1 1 LYS A 16 THR A 24 1 9 HELIX 2 2 ASP A 73 SER A 83 1 11 HELIX 3 3 LEU A 98 LEU A 111 1 14 HELIX 4 4 LEU A 122 LYS A 127 1 6 HELIX 5 5 ILE A 134 LEU A 141 1 8 HELIX 6 6 ILE A 156 ARG A 165 1 10 HELIX 7 7 GLN A 179 GLN A 190 1 12 HELIX 8 8 PRO A 198 GLU A 210 1 13 HELIX 9 9 ILE A 213 ALA A 219 5 7 HELIX 10 10 ASP A 224 ASN A 232 1 9 HELIX 11 11 PRO A 240 VAL A 259 1 20 HELIX 12 12 LYS B 16 THR B 24 1 9 HELIX 13 13 ASP B 73 SER B 83 1 11 HELIX 14 14 LEU B 98 LEU B 111 1 14 HELIX 15 15 LEU B 122 LYS B 127 1 6 HELIX 16 16 ILE B 134 LEU B 141 1 8 HELIX 17 17 ILE B 156 ARG B 165 1 10 HELIX 18 18 GLN B 179 GLN B 190 1 12 HELIX 19 19 PRO B 198 GLU B 210 1 13 HELIX 20 20 ILE B 213 ALA B 219 5 7 HELIX 21 21 LYS B 225 ASN B 232 1 8 HELIX 22 22 PRO B 240 VAL B 259 1 20
SHEET 1 AA 7 GLN A 28 ASN A 32 0 SHEET 2 AA 7 GLU A 39 ALA A 46 -1 O ARG A 40 N GLY A 31 SHEET 3 AA 7 HIS A 50 ASP A 56 -1 O VAL A 52 N PHE A 45 SHEET 4 AA 7 GLN A 2 ILE A 9 1 O GLN A 2 N GLN A 51 SHEET 5 AA 7 MET A 88 ASP A 94 1 O MET A 88 N GLY A 7 SHEET 6 AA 7 CYS A 115 ASN A 120 1 O VAL A 116 N ASN A 91 SHEET 7 AA 7 VAL A 145 PRO A 147 1 O ILE A 146 N LEU A 119 SHEET 1 BA 7 GLN B 28 ASN B 32 0 SHEET 2 BA 7 GLU B 39 ALA B 46 -1 O ARG B 40 N GLY B 31 SHEET 3 BA 7 HIS B 50 ASP B 56 -1 O VAL B 52 N PHE B 45 SHEET 4 BA 7 GLN B 2 GLY B 10 1 O GLN B 2 N GLN B 51 SHEET 5 BA 7 MET B 88 ASP B 94 1 O MET B 88 N GLY B 7 SHEET 6 BA 7 CYS B 115 ASN B 120 1 O VAL B 116 N ASN B 91 SHEET 7 BA 7 VAL B 145 PRO B 147 1 O ILE B 146 N LEU B 119
LINK MG MG A1262 OD2 ASP A 133 1555 1555 2.79 LINK MG MG A1262 OD2 ASP A 133 1555 2655 2.82 LINK MG MG A1262 OD2 ASP A 133 1555 3665 2.82 LINK MG MG B1262 OD2 ASP B 133 1555 2555 2.50 LINK MG MG B1262 OD2 ASP B 133 1555 3555 2.47 LINK MG MG B1262 OD2 ASP B 133 1555 1555 2.41
SITE 1 AC1 1 ASP A 133 SITE 1 AC2 1 ASP B 133
CRYST1 84.204 84.204 122.457 90.00 90.00 120.00 P 63 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011876 0.006857 0.000000 0.00000
SCALE2 0.000000 0.013713 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008166 0.00000