10 20 30 40 50 60 70 80 2VNH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 05-FEB-08 2VNH
TITLE X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM TITLE 2 RHODOBACTER CAPSULATUS IN COMPLEX WITH NADP. FORM II AT 2. TITLE 3 27 ANGSTROMS RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH\:FERREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FERREDOXIN-NADP REDUCTASE; COMPND 5 EC: 1.18.1.2; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 STRAIN: 37B4; SOURCE 5 VARIANT: DSM938; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21
KEYWDS ELECTRON TRANSFER, RHODOBACTER CAPSULATUS, KEYWDS 2 FERREDOXIN(FLAVODOXIN)-NADP(H) REDUCTASE, NADP, KEYWDS 3 FLAVOPROTEINS, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR I.PEREZ-DORADO,J.A.HERMOSO
REVDAT 4 10-FEB-09 2VNH 1 HETATM REVDAT 3 20-JAN-09 2VNH 1 JRNL REVDAT 2 23-DEC-08 2VNH 1 VERSN JRNL REVDAT 1 11-NOV-08 2VNH 0
JRNL AUTH A.BORTOLOTTI,I.PEREZ-DORADO,G.GONI,M.MEDINA, JRNL AUTH 2 J.A.HERMOSO,N.CARRILLO,N.CORTEZ JRNL TITL COENZYME BINDING AND HYDRIDE TRANSFER IN JRNL TITL 2 RHODOBACTER CAPSULATUS FERREDOXIN/FLAVODOXIN JRNL TITL 3 NADP(H) OXIDOREDUCTASE. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1794 199 2009 JRNL REFN ISSN 0006-3002 JRNL PMID 18973834 JRNL DOI 10.1016/J.BBAPAP.2008.09.013
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.NOGUES,I.PEREZ-DORADO,S.FRAGO,C.BITTEL,S.MAYHEW, REMARK 1 AUTH 2 C.GOMEZ-MORENO,J.A.HERMOSO,M.MEDINA,N.CORTEZ, REMARK 1 AUTH 3 N.CARRILLO REMARK 1 TITL THE FEREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER REMARK 1 TITL 2 CAPSULATUS: MOLECULAR STRUCTURE AND CATALYTIC REMARK 1 TITL 3 MECHANISM REMARK 1 REF BIOCHEMISTRY V. 44 11730 2005 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 16128574 REMARK 1 DOI 10.1021/BI0508183 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.PEREZ-DORADO,C.BITTEL,N.CORTEZ,J.A.HERMOSO REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION REMARK 1 TITL 2 ANALYSIS OF FERREDOXIN-NADP(H) REDUCTASE FROM REMARK 1 TITL 3 RHODOBACTER CAPSULATUS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 2332 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15583382 REMARK 1 DOI 10.1107/S090744490402640X REMARK 1 REFERENCE 3 REMARK 1 AUTH C.BITTEL,L.C.TABARES,M.ARMESTO,N.CARRILLO,N.CORTEZ REMARK 1 TITL THE OXIDANT-RESPONSIVE DIAPHORASE OF RHODOBACTER REMARK 1 TITL 2 CAPSULATUS IS A FERREDOXIN (FLAVODOXIN)-NADP(H) REMARK 1 TITL 3 REDUCTASE REMARK 1 REF FEBS LETT. V. 553 408 2003 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 14572660
REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1608240.78 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 13148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.9 REMARK 3 FREE R VALUE TEST SET COUNT : 903 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1986 REMARK 3 BIN R VALUE (WORKING SET) : 0.332 REMARK 3 BIN FREE R VALUE : 0.344 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.2 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2055 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.73 REMARK 3 B22 (A**2) : -9.73 REMARK 3 B33 (A**2) : 19.47 REMARK 3 B12 (A**2) : -3.08 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.7 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.5 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.53 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.345864 REMARK 3 BSOL : 54.8779 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FIRST 12 RESIDUES ARE NOT REMARK 3 INCLUDED IN THE MODEL DUE TO THEY ARE NOT OBSERVED IN THE REMARK 3 ELECTRON DENSITY MAP
REMARK 4 REMARK 4 2VNH COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-08. REMARK 100 THE PDBE ID CODE IS EBI-35210.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19685 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.27 REMARK 200 RESOLUTION RANGE LOW (A) : 53.63 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.5 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.2 REMARK 200 R MERGE FOR SHELL (I) : 0.40 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BGI REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.8 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 PRO A 8 REMARK 465 ILE A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 40 -5.02 -53.96 REMARK 500 PRO A 106 37.13 -73.13 REMARK 500 ALA A 116 -9.18 -56.41 REMARK 500 LEU A 117 -167.77 -113.13 REMARK 500 LEU A 118 -35.26 -170.51 REMARK 500 LEU A 178 -61.28 -95.77 REMARK 500 GLU A 181 22.54 46.98 REMARK 500 ARG A 195 -78.33 -110.76 REMARK 500 PRO A 221 123.03 -31.56 REMARK 500 MET A 222 96.10 -44.94 REMARK 500 ASP A 227 -149.39 -71.26 REMARK 500 ARG A 228 149.26 157.88 REMARK 500 ALA A 254 -157.44 -111.17 REMARK 500 ASN A 255 106.45 -21.90 REMARK 500 SER A 256 65.66 70.18 REMARK 500 GLU A 257 120.23 168.76 REMARK 500 PRO A 258 137.04 -37.10 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HTG A 275
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BGJ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H REMARK 900 ) REDUCTASE FROM RHODOBACTER CAPSULATUS AT 2 REMARK 900 .1 ANGSTROMS REMARK 900 RELATED ID: 2BGI RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H REMARK 900 ) REDUCTASE FROM RHODOBACTER CAPSULATUS REMARK 900 COMPLEXED WITH THREE MOLECULES OF THE REMARK 900 DETERGENT N-HEPTYL-BETA-D-THIOGLUCOSIDE AT REMARK 900 1.7 ANGSTROMS REMARK 900 RELATED ID: 2VNI RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H REMARK 900 ) REDUCTASE FROM RHODOBACTER CAPSULATUS IN REMARK 900 COMPLEX WITH 2P-AMP AT 2.37 ANGSTROMS REMARK 900 RESOLUTION REMARK 900 RELATED ID: 2VNJ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H REMARK 900 ) REDUCTASE FROM RHODOBACTER CAPSULATUS IN REMARK 900 COMPLEX WITH NADP. FORM I AT 2.13 REMARK 900 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 2VNK RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H REMARK 900 ) REDUCTASE FROM RHODOBACTER CAPSULATUS IN REMARK 900 COMPLEX WITH NADP. FORM III AT 1.93 REMARK 900 ANGSTROMS RESOLUTION
DBREF 2VNH A 1 272 UNP Q9L6V3 Q9L6V3_RHOCA 1 272
SEQRES 1 A 272 THR THR VAL ASN GLU THR THR PRO ILE ALA PRO ALA LYS SEQRES 2 A 272 VAL LEU PRO ASP ALA GLN THR VAL THR SER VAL ARG HIS SEQRES 3 A 272 TRP THR ASP THR LEU PHE SER PHE ARG VAL THR ARG PRO SEQRES 4 A 272 GLN THR LEU ARG PHE ARG SER GLY GLU PHE VAL MET ILE SEQRES 5 A 272 GLY LEU LEU ASP ASP ASN GLY LYS PRO ILE MET ARG ALA SEQRES 6 A 272 TYR SER ILE ALA SER PRO ALA TRP ASP GLU GLU LEU GLU SEQRES 7 A 272 PHE TYR SER ILE LYS VAL PRO ASP GLY PRO LEU THR SER SEQRES 8 A 272 ARG LEU GLN HIS ILE LYS VAL GLY GLU GLN ILE ILE LEU SEQRES 9 A 272 ARG PRO LYS PRO VAL GLY THR LEU VAL ILE ASP ALA LEU SEQRES 10 A 272 LEU PRO GLY LYS ARG LEU TRP PHE LEU ALA THR GLY THR SEQRES 11 A 272 GLY ILE ALA PRO PHE ALA SER LEU MET ARG GLU PRO GLU SEQRES 12 A 272 ALA TYR GLU LYS PHE ASP GLU VAL ILE MET MET HIS ALA SEQRES 13 A 272 CYS ARG THR VAL ALA GLU LEU GLU TYR GLY ARG GLN LEU SEQRES 14 A 272 VAL GLU ALA LEU GLN GLU ASP PRO LEU ILE GLY GLU LEU SEQRES 15 A 272 VAL GLU GLY LYS LEU LYS TYR TYR PRO THR THR THR ARG SEQRES 16 A 272 GLU GLU PHE HIS HIS MET GLY ARG ILE THR ASP ASN LEU SEQRES 17 A 272 ALA SER GLY LYS VAL PHE GLU ASP LEU GLY ILE ALA PRO SEQRES 18 A 272 MET ASN PRO GLU THR ASP ARG ALA MET VAL CYS GLY SER SEQRES 19 A 272 LEU ALA PHE ASN VAL ASP VAL MET LYS VAL LEU GLU SER SEQRES 20 A 272 TYR GLY LEU ARG GLU GLY ALA ASN SER GLU PRO ARG GLU SEQRES 21 A 272 PHE VAL VAL GLU LYS ALA PHE VAL GLY GLU GLY ILE
HET FAD A 273 53 HET NAP A 274 48 HET HTG A 275 19
HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NAP PHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM HTG HEPTYL 1-THIOHEXOPYRANOSIDE
FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 HTG C13 H26 O5 S FORMUL 5 HOH *35(H2 O1)
HELIX 1 1 LEU A 89 GLN A 94 1 6 HELIX 2 2 VAL A 113 LEU A 117 5 5 HELIX 3 3 ILE A 132 MET A 139 1 8 HELIX 4 4 ARG A 140 GLU A 146 5 7 HELIX 5 5 LEU A 163 ASP A 176 1 14 HELIX 6 6 ARG A 203 SER A 210 1 8 HELIX 7 7 GLY A 211 GLY A 218 1 8 HELIX 8 8 SER A 234 SER A 247 1 14
SHEET 1 AA 6 PRO A 61 SER A 67 0 SHEET 2 AA 6 PHE A 49 LEU A 55 -1 O VAL A 50 N TYR A 66 SHEET 3 AA 6 GLN A 101 VAL A 109 -1 O ILE A 103 N GLY A 53 SHEET 4 AA 6 ALA A 18 HIS A 26 -1 O GLN A 19 N ILE A 102 SHEET 5 AA 6 LEU A 31 THR A 37 -1 O SER A 33 N ARG A 25 SHEET 6 AA 6 GLU A 76 ILE A 82 -1 O LEU A 77 N VAL A 36 SHEET 1 AB 5 LEU A 187 THR A 193 0 SHEET 2 AB 5 GLU A 150 CYS A 157 1 O VAL A 151 N LYS A 188 SHEET 3 AB 5 ARG A 122 THR A 128 1 O LEU A 123 N ILE A 152 SHEET 4 AB 5 ALA A 229 GLY A 233 1 O MET A 230 N LEU A 126 SHEET 5 AB 5 PHE A 261 LYS A 265 1 O VAL A 262 N VAL A 231
SITE 1 AC1 25 ARG A 64 ALA A 65 TYR A 66 SER A 67 SITE 2 AC1 25 TYR A 80 SER A 81 ILE A 82 VAL A 84 SITE 3 AC1 25 GLY A 87 PRO A 88 LEU A 89 THR A 90 SITE 4 AC1 25 THR A 130 ALA A 133 LYS A 265 ALA A 266 SITE 5 AC1 25 PHE A 267 VAL A 268 GLY A 271 ILE A 272 SITE 6 AC1 25 HTG A 275 HOH A2006 HOH A2008 HOH A2033 SITE 7 AC1 25 HOH A2034 SITE 1 AC2 13 THR A 128 ARG A 158 THR A 194 ARG A 195 SITE 2 AC2 13 ARG A 203 THR A 205 ALA A 236 PHE A 237 SITE 3 AC2 13 ASP A 240 GLU A 246 SER A 247 HOH A2025 SITE 4 AC2 13 HOH A2035 SITE 1 AC3 3 GLU A 264 LYS A 265 FAD A 273
CRYST1 61.930 61.930 123.000 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016147 0.009323 0.000000 0.00000
SCALE2 0.000000 0.018645 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008130 0.00000