2VFM - Header Asymmetric Unit

HEADER HYDROLASE 05-NOV-07 2VFM

TITLE LOW TEMPERATURE STRUCTURE OF P22 TAILSPIKE PROTEIN FRAGMENT TITLE 2 (109-666)

COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL TAIL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 110-667; COMPND 5 SYNONYM: P22 TAILSPIKE PROTEIN, WILD TYPE, LATE PROTEIN COMPND 6 GP9,TAILSPIKE-PROTEIN, TSP, ENDORHAMNOSIDASE, COMPND 7 ENDO-1,3-ALPHA-L-RHAMNOSIDASE; COMPND 8 EC: 3.2.1.-; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: THE PROTEIN IS LACKING THE N-TERMINAL HEAD- COMPND 11 BINDING DOMAIN

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P22; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE P22; SOURCE 4 ORGANISM_TAXID: 10754; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM83; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PASK31; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTSF1

KEYWDS P22 TAILSPIKE PROTEIN, SALMONELLA BACTERIOPHAGE P22, KEYWDS 2 PROTEIN FOLDING, PROTEIN STABILITY, RIGHT-HANDED PARALLEL KEYWDS 3 BETA-HELIX, HYDROLASE, LATE PROTEIN, ENDOGLYCOSIDASE

EXPDTA X-RAY DIFFRACTION

AUTHOR M.BECKER,J.J.MUELLER,U.HEINEMANN,R.SECKLER

REVDAT 1 16-DEC-08 2VFM 0

JRNL AUTH M.BECKER,J.J.MUELLER,T.WEIKL,U.HEINEMANN,R.SECKLER JRNL TITL SIDE-CHAIN STACKING AND BETA-HELIX STABILITY IN JRNL TITL 2 P22 TAILSPIKE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.SCHULER,F.FUERST,F.OSTERROTH,S.STEINBACHER, REMARK 1 AUTH 2 R.HUBER,R.SECKLER REMARK 1 TITL PLASTICITY AND STERIC STRAIN IN A PARALLEL BETA- REMARK 1 TITL 2 HELIX: RATIONAL MUTATIONS IN THE P22 TAILSPIKE REMARK 1 TITL 3 PROTEIN REMARK 1 REF PROTEINS: STRUCT.,FUNCT., V. 39 89 2000 REMARK 1 REF 2 GENET. REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 10737931

REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 77129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2335 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 5356 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.052 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4610 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3107 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6237 ; 1.330 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7615 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 579 ; 6.857 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;34.898 ;24.660 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 766 ;11.915 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.333 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5144 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 913 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 805 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3302 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2202 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2398 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 573 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 169 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 111 ; 0.148 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2945 ; 1.565 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4611 ; 2.059 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1902 ; 3.244 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1626 ; 4.355 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS.

REMARK 4 REMARK 4 2VFM COMPLIES WITH FORMAT V. 3.20, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-07. REMARK 100 THE PDBE ID CODE IS EBI-32652.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92018 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74828 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.59 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NONE REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 10.6 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.1 REMARK 200 R MERGE FOR SHELL (I) : 0.15 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VFQ REMARK 200 REMARK 200 REMARK: FOR REFINEMENT REFLECTIONS IN THE CORNERS OF THE REMARK 200 IMAGE PLATE WERE USED ADDITIONALLY, 1.5-1.59 A RESOLUTION, REMARK 200 COMPLETENESS 39.3 PERCENT, REDUNDANCY 1.9, RSYM 0.181, REMARK 200 I DIVIDED BY SIGMA(I) 4.5

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.4 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 2 MICROLITER 1.5 M AMMONIUM REMARK 280 SULFATE, 0.1 M SODIUM PHOSPHATE, PH 10.0, PLUS 3.3 REMARK 280 MICROLITER 10 MG/ML PROTEIN SOLUTION IN 10 MM HEPES, PH REMARK 280 7.0; RESERVOIR: 750 MICOLITER 1.0 M AMMONIUM SULFATE, 0.1 REMARK 280 M SODIUM PHOSPHATE, PH 10.0

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 59.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 59.95000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 59.95000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 59.95000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 59.95000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 59.95000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 59.95000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 59.95000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 59.95000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 59.95000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 59.95000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 59.95000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 59.95000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 31720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -189.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000

REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 CA CA A1680 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2194 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2227 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2588 LIES ON A SPECIAL POSITION.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 108 REMARK 465 ASP A 109 REMARK 465 PRO A 110 REMARK 465 ASP A 111

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 206 47.64 -77.88 REMARK 500 ASN A 257 50.12 -143.31 REMARK 500 ASN A 296 58.92 -92.77 REMARK 500 VAL A 331 -141.12 -126.81 REMARK 500 GLU A 359 -102.94 -117.66 REMARK 500 TRP A 391 -110.21 -102.97 REMARK 500 ASP A 401 -77.39 -80.10 REMARK 500 ASN A 430 61.51 61.87 REMARK 500 LEU A 466 58.96 -91.71 REMARK 500 ASN A 474 61.73 60.06 REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1680 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 663 O REMARK 620 2 LEU A 663 O 86.8 REMARK 620 3 LEU A 663 O 86.8 86.7 REMARK 620 4 HOH A2786 O 166.9 103.0 85.1 REMARK 620 5 HOH A2786 O 103.2 85.3 166.8 86.5 REMARK 620 6 HOH A2786 O 85.4 167.1 103.1 86.5 86.6 REMARK 620 N 1 2 3 4 5

REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED.

REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED.

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1667 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1668 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1669 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1670 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1671 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1672 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1673 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1674 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1675 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1676 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1677 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1678 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1679 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1680

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LKT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HEAD-BINDING DOMAIN REMARK 900 OF PHAGE P22TAILSPIKE PROTEIN REMARK 900 RELATED ID: 1QA1 RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN, MUTANT V331G REMARK 900 RELATED ID: 1QA2 RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN, MUTANT A334V REMARK 900 RELATED ID: 1QA3 RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN, MUTANT A334I REMARK 900 RELATED ID: 1QRB RELATED DB: PDB REMARK 900 PLASTICITY AND STERIC STRAIN IN A PARALLEL REMARK 900 BETA-HELIX:RATIONAL MUTATIONS IN P22 REMARK 900 TAILSPIKE PROTEIN REMARK 900 RELATED ID: 1TYV RELATED DB: PDB REMARK 900 STRUCTURE OF TAILSPIKE-PROTEIN REMARK 900 RELATED ID: 1CLW RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN FROM PHAGE P22, V331A REMARK 900 MUTANT REMARK 900 RELATED ID: 1QQ1 RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN, MUTANT E359G REMARK 900 RELATED ID: 1QRC RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN, MUTANT W391A REMARK 900 RELATED ID: 1TSP RELATED DB: PDB REMARK 900 RELATED ID: 2VFN RELATED DB: PDB REMARK 900 LOW TEMPERATURE STRUCTURE OF P22 TAILSPIKE REMARK 900 PROTEIN FRAGMENT (109-666), MUTANT V125A REMARK 900 RELATED ID: 2VFO RELATED DB: PDB REMARK 900 LOW TEMPERATURE STRUCTURE OF P22 TAILSPIKE REMARK 900 PROTEIN FRAGMENT (109-666), MUTANT V125L REMARK 900 RELATED ID: 2VFP RELATED DB: PDB REMARK 900 LOW TEMPERATURE STRUCTURE OF P22 TAILSPIKE REMARK 900 PROTEIN FRAGMENT (109-666), MUTANT V349L REMARK 900 RELATED ID: 2VFQ RELATED DB: PDB REMARK 900 LOW TEMPERATURE STRUCTURE OF P22 TAILSPIKE REMARK 900 PROTEIN FRAGMENT (109-666), MUTANT V450A

REMARK 999 REMARK 999 SEQUENCE REMARK 999 GLY513 IN THE SWISSPROT ENTRY WAS CORRECTED IN THE REMARK 999 SEQUENCE TO SER513 WHICH IS ALSO PRESENT IN THE PARENT REMARK 999 WILD-TYPE DNA

DBREF 2VFM A 108 108 PDB 2VFM 2VFM 108 108 DBREF 2VFM A 109 666 UNP P12528 TSPE_BPP22 110 667

SEQADV 2VFM SER A 513 UNP P12528 GLY 514 CONFLICT (SEE REMARK 999)

SEQRES 1 A 559 MET ASP PRO ASP GLN TYR SER ILE GLU ALA ASP LYS LYS SEQRES 2 A 559 PHE LYS TYR SER VAL LYS LEU SER ASP TYR PRO THR LEU SEQRES 3 A 559 GLN ASP ALA ALA SER ALA ALA VAL ASP GLY LEU LEU ILE SEQRES 4 A 559 ASP ARG ASP TYR ASN PHE TYR GLY GLY GLU THR VAL ASP SEQRES 5 A 559 PHE GLY GLY LYS VAL LEU THR ILE GLU CYS LYS ALA LYS SEQRES 6 A 559 PHE ILE GLY ASP GLY ASN LEU ILE PHE THR LYS LEU GLY SEQRES 7 A 559 LYS GLY SER ARG ILE ALA GLY VAL PHE MET GLU SER THR SEQRES 8 A 559 THR THR PRO TRP VAL ILE LYS PRO TRP THR ASP ASP ASN SEQRES 9 A 559 GLN TRP LEU THR ASP ALA ALA ALA VAL VAL ALA THR LEU SEQRES 10 A 559 LYS GLN SER LYS THR ASP GLY TYR GLN PRO THR VAL SER SEQRES 11 A 559 ASP TYR VAL LYS PHE PRO GLY ILE GLU THR LEU LEU PRO SEQRES 12 A 559 PRO ASN ALA LYS GLY GLN ASN ILE THR SER THR LEU GLU SEQRES 13 A 559 ILE ARG GLU CYS ILE GLY VAL GLU VAL HIS ARG ALA SER SEQRES 14 A 559 GLY LEU MET ALA GLY PHE LEU PHE ARG GLY CYS HIS PHE SEQRES 15 A 559 CYS LYS MET VAL ASP ALA ASN ASN PRO SER GLY GLY LYS SEQRES 16 A 559 ASP GLY ILE ILE THR PHE GLU ASN LEU SER GLY ASP TRP SEQRES 17 A 559 GLY LYS GLY ASN TYR VAL ILE GLY GLY ARG THR SER TYR SEQRES 18 A 559 GLY SER VAL SER SER ALA GLN PHE LEU ARG ASN ASN GLY SEQRES 19 A 559 GLY PHE GLU ARG ASP GLY GLY VAL ILE GLY PHE THR SER SEQRES 20 A 559 TYR ARG ALA GLY GLU SER GLY VAL LYS THR TRP GLN GLY SEQRES 21 A 559 THR VAL GLY SER THR THR SER ARG ASN TYR ASN LEU GLN SEQRES 22 A 559 PHE ARG ASP SER VAL VAL ILE TYR PRO VAL TRP ASP GLY SEQRES 23 A 559 PHE ASP LEU GLY ALA ASP THR ASP MET ASN PRO GLU LEU SEQRES 24 A 559 ASP ARG PRO GLY ASP TYR PRO ILE THR GLN TYR PRO LEU SEQRES 25 A 559 HIS GLN LEU PRO LEU ASN HIS LEU ILE ASP ASN LEU LEU SEQRES 26 A 559 VAL ARG GLY ALA LEU GLY VAL GLY PHE GLY MET ASP GLY SEQRES 27 A 559 LYS GLY MET TYR VAL SER ASN ILE THR VAL GLU ASP CYS SEQRES 28 A 559 ALA GLY SER GLY ALA TYR LEU LEU THR HIS GLU SER VAL SEQRES 29 A 559 PHE THR ASN ILE ALA ILE ILE ASP THR ASN THR LYS ASP SEQRES 30 A 559 PHE GLN ALA ASN GLN ILE TYR ILE SER GLY ALA CYS ARG SEQRES 31 A 559 VAL ASN GLY LEU ARG LEU ILE GLY ILE ARG SER THR ASP SEQRES 32 A 559 GLY GLN SER LEU THR ILE ASP ALA PRO ASN SER THR VAL SEQRES 33 A 559 SER GLY ILE THR GLY MET VAL ASP PRO SER ARG ILE ASN SEQRES 34 A 559 VAL ALA ASN LEU ALA GLU GLU GLY LEU GLY ASN ILE ARG SEQRES 35 A 559 ALA ASN SER PHE GLY TYR ASP SER ALA ALA ILE LYS LEU SEQRES 36 A 559 ARG ILE HIS LYS LEU SER LYS THR LEU ASP SER GLY ALA SEQRES 37 A 559 LEU TYR SER HIS ILE ASN GLY GLY ALA GLY SER GLY SER SEQRES 38 A 559 ALA TYR THR GLN LEU THR ALA ILE SER GLY SER THR PRO SEQRES 39 A 559 ASP ALA VAL SER LEU LYS VAL ASN HIS LYS ASP CYS ARG SEQRES 40 A 559 GLY ALA GLU ILE PRO PHE VAL PRO ASP ILE ALA SER ASP SEQRES 41 A 559 ASP PHE ILE LYS ASP SER SER CYS PHE LEU PRO TYR TRP SEQRES 42 A 559 GLU ASN ASN SER THR SER LEU LYS ALA LEU VAL LYS LYS SEQRES 43 A 559 PRO ASN GLY GLU LEU VAL ARG LEU THR LEU ALA THR LEU

HET GOL A1667 6 HET GOL A1668 6 HET GOL A1669 6 HET GOL A1670 6 HET GOL A1671 6 HET GOL A1672 6 HET GOL A1673 6 HET GOL A1674 6 HET GOL A1675 6 HET GOL A1676 6 HET GOL A1677 6 HET SO4 A1678 5 HET SO4 A1679 5 HET CA A1680 1

HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL

FORMUL 2 SO4 2(O4 S 2-) FORMUL 3 CA CA 2+ FORMUL 4 GOL 11(C3 H8 O3) FORMUL 5 HOH *825(H2 O1)

HELIX 1 HA GLN A 112 LYS A 120 1 9 HELIX 2 HB LEU A 127 ASP A 129 5 3 HELIX 3 HC LEU A 133 ALA A 139 1 7 HELIX 4 HD ALA A 217 VAL A 221 1 5 HELIX 5 HE SER A 237 LYS A 241 1 5 HELIX 6 HF ILE A 245 LEU A 248 1 4 HELIX 7 HG PRO A 251 ALA A 253 5 3 HELIX 8 HH PRO A 532 ARG A 534 5 3 HELIX 9 HI HIS A 610 ASP A 612 5 3 HELIX 10 HJ ASP A 627 PHE A 629 5 3

SHEET 1 A12 THR A 157 ASP A 159 0 SHEET 2 A12 GLY A 177 THR A 182 1 N ILE A 180 O GLU A 156 SHEET 3 A12 SER A 260 ARG A 265 1 N THR A 261 O GLY A 177 SHEET 4 A12 ALA A 280 ARG A 285 1 N GLY A 281 O SER A 260 SHEET 5 A12 ILE A 306 GLU A 309 1 N THR A 307 O PHE A 282 SHEET 6 A12 ALA A 334 LEU A 337 1 N GLN A 335 O ILE A 306 SHEET 7 A12 VAL A 362 THR A 364 1 N LYS A 363 O ALA A 334 SHEET 8 A12 PHE A 394 LEU A 396 1 N ASP A 395 O VAL A 362 SHEET 9 A12 PHE A 441 LYS A 446 1 N GLY A 442 O PHE A 394 SHEET 10 A12 ALA A 463 HIS A 468 1 N TYR A 464 O PHE A 441 SHEET 11 A12 ILE A 490 ILE A 492 1 N TYR A 491 O ALA A 463 SHEET 12 A12 ILE A 516 ALA A 518 1 N ASP A 517 O ILE A 490 SHEET 1 B14 SER A 124 LYS A 126 0 SHEET 2 B14 GLY A 143 ILE A 146 1 N LEU A 145 O VAL A 125 SHEET 3 B14 THR A 166 CYS A 169 1 N GLU A 168 O LEU A 144 SHEET 4 B14 ARG A 189 ALA A 191 1 N ALA A 191 O ILE A 167 SHEET 5 B14 GLU A 271 HIS A 273 1 N HIS A 273 O ILE A 190 SHEET 6 B14 LYS A 291 VAL A 293 1 N VAL A 293 O VAL A 272 SHEET 7 B14 TYR A 320 ILE A 322 1 N ILE A 322 O MET A 292 SHEET 8 B14 GLY A 348 ILE A 350 1 N ILE A 350 O VAL A 321 SHEET 9 B14 GLN A 380 ARG A 382 1 N ARG A 382 O VAL A 349 SHEET 10 B14 LEU A 427 ASP A 429 1 N ASP A 429 O PHE A 381 SHEET 11 B14 TYR A 449 SER A 451 1 N SER A 451 O ILE A 428 SHEET 12 B14 VAL A 471 THR A 473 1 N THR A 473 O VAL A 450 SHEET 13 B14 ARG A 497 ASN A 499 1 N ASN A 499 O PHE A 472 SHEET 14 B14 THR A 522 SER A 524 1 N SER A 524 O VAL A 498 SHEET 1 C13 ASP A 149 ASN A 151 0 SHEET 2 C13 LYS A 172 ILE A 174 1 N ILE A 174 O TYR A 150 SHEET 3 C13 PHE A 194 GLU A 196 1 N GLU A 196 O PHE A 173 SHEET 4 C13 SER A 276 LEU A 278 1 N LEU A 278 O MET A 195 SHEET 5 C13 ASN A 296 GLY A 300 1 N SER A 299 O GLY A 277 SHEET 6 C13 ARG A 325 TYR A 328 1 N SER A 327 O PRO A 298 SHEET 7 C13 THR A 353 TYR A 355 1 N TYR A 355 O THR A 326 SHEET 8 C13 VAL A 385 ILE A 387 1 N VAL A 385 O PHE A 352 SHEET 9 C13 LEU A 432 ARG A 434 1 N ARG A 434 O VAL A 386 SHEET 10 C13 THR A 454 GLU A 456 1 N GLU A 456 O VAL A 433 SHEET 11 C13 ALA A 476 ILE A 478 1 N ILE A 478 O VAL A 455 SHEET 12 C13 ARG A 502 LEU A 503 1 N ARG A 502 O ILE A 475 SHEET 13 C13 THR A 527 GLY A 528 1 N THR A 527 O LEU A 501 SHEET 1 D 4 SER A 557 LEU A 562 0 SHEET 2 D 4 GLY A 574 ILE A 580 -1 N GLY A 574 O LEU A 562 SHEET 3 D 4 ALA A 589 SER A 597 -1 N TYR A 590 O HIS A 579 SHEET 4 D 4 THR A 600 VAL A 608 -1 N THR A 600 O SER A 597 SHEET 1 E 3 CYS A 635 GLU A 641 0 SHEET 2 E 3 SER A 646 LYS A 652 -1 N SER A 646 O GLU A 641 SHEET 3 E 3 LEU A 658 ALA A 664 -1 N VAL A 659 O VAL A 651

LINK CA CA A1680 O LEU A 663 1555 1555 2.31 LINK CA CA A1680 O LEU A 663 1555 9555 2.31 LINK CA CA A1680 O LEU A 663 1555 5555 2.31 LINK CA CA A1680 O HOH A2786 1555 5555 2.44 LINK CA CA A1680 O HOH A2786 1555 9555 2.44 LINK CA CA A1680 O HOH A2786 1555 1555 2.44

SITE 1 AC1 6 ASN A 151 ILE A 174 HOH A2044 HOH A2791 SITE 2 AC1 6 HOH A2792 HOH A2808 SITE 1 AC2 8 LYS A 170 ALA A 171 LYS A 172 HOH A2048 SITE 2 AC2 8 HOH A2119 HOH A2793 HOH A2795 HOH A2796 SITE 1 AC3 7 GLU A 359 LYS A 363 HOH A2488 HOH A2505 SITE 2 AC3 7 HOH A2798 HOH A2799 HOH A2800 SITE 1 AC4 9 GLN A 366 ASP A 395 GLY A 397 ASP A 399 SITE 2 AC4 9 GLY A 442 MET A 443 ASP A 444 HOH A2506 SITE 3 AC4 9 HOH A2801 SITE 1 AC5 8 ASN A 547 SER A 557 ALA A 558 ALA A 559 SITE 2 AC5 8 LYS A 561 HOH A2666 HOH A2802 HOH A2803 SITE 1 AC6 8 TYR A 153 GLN A 421 LYS A 446 HIS A 468 SITE 2 AC6 8 GLU A 469 GLY A 494 ALA A 495 HOH A2061 SITE 1 AC7 6 GLN A 212 THR A 482 LYS A 483 ARG A 507 SITE 2 AC7 6 HOH A2805 HOH A2806 SITE 1 AC8 5 LYS A 172 GLU A 196 LYS A 228 HOH A2045 SITE 2 AC8 5 HOH A2808 SITE 1 AC9 4 THR A 307 TRP A 365 HOH A2410 HOH A2810 SITE 1 BC1 7 TRP A 315 ASN A 340 ASP A 411 TYR A 412 SITE 2 BC1 7 HOH A2812 HOH A2813 HOH A2814 SITE 1 BC2 9 ILE A 580 ASN A 581 GLY A 582 HIS A 610 SITE 2 BC2 9 LYS A 611 HOH A2699 HOH A2728 HOH A2816 SITE 3 BC2 9 HOH A2818 SITE 1 BC3 6 THR A 235 VAL A 236 LYS A 302 HOH A2820 SITE 2 BC3 6 HOH A2821 HOH A2822 SITE 1 BC4 4 TYR A 555 ASP A 556 SER A 557 HIS A 579 SITE 1 BC5 2 LEU A 663 HOH A2786

CRYST1 119.900 119.900 119.900 90.00 90.00 90.00 P 21 3 12

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.008340 0.000000 0.000000 0.00000

SCALE2 0.000000 0.008340 0.000000 0.00000

SCALE3 0.000000 0.000000 0.008340 0.00000