10 20 30 40 50 60 70 80 2V2A - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE 04-JUN-07 2V2A
TITLE L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI ( TITLE 2 MUTANT E192A-K248G-R253A-E254A)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHAMNULOSE-1-PHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.19; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM105; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKK223-3
KEYWDS ZINC ENZYME, METAL-BINDING, SURFACE MUTATION, 2-KETOSE DEGRADATION, KEYWDS 2 PROTEIN-PROTEIN INTERFACE, LYASE, ALDOLASE, CLASS II, RARE SUGAR, KEYWDS 3 CLEAVAGE OF L-RHAMNULOSE-1-PHOSPHATE TO DIHYDROXYACETONE PHOSPHATE, KEYWDS 4 BACTERIAL L-RHAMNOSE METABOLISM, RHAMNOSE METABOLISM, PROTEIN KEYWDS 5 ENGINEERING, DOMAIN MOTION FOR MECHANICAL SUPPORT OF CATALYSIS
EXPDTA X-RAY DIFFRACTION
AUTHOR D.GRUENINGER,G.E.SCHULZ
REVDAT 4 13-JUL-11 2V2A 1 VERSN REVDAT 3 24-FEB-09 2V2A 1 VERSN REVDAT 2 15-JAN-08 2V2A 1 JRNL REVDAT 1 08-JAN-08 2V2A 0
JRNL AUTH D.GRUENINGER,G.E.SCHULZ JRNL TITL ANTENNA DOMAIN MOBILITY AND ENZYMATIC REACTION OF JRNL TITL 2 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE. JRNL REF BIOCHEMISTRY V. 47 607 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18085797 JRNL DOI 10.1021/BI7012799
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.KROEMER,I.MERKEL,G.E.SCHULZ REMARK 1 TITL STRUCTURE AND CATALYTIC MECHANISM OF L-RHAMNULOSE- REMARK 1 TITL 2 1-PHOSPHATE ALDOLASE REMARK 1 REF BIOCHEMISTRY V. 42 10560 2003 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 12962479 REMARK 1 DOI 10.1021/BI0349266
REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 28595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 242 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2360 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3243 ; 1.253 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 5.383 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;42.401 ;24.952 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;13.059 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.959 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 357 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1842 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1310 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1669 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 264 ; 0.129 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 86 ; 0.247 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1502 ; 0.489 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2383 ; 0.796 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 979 ; 1.459 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 849 ; 2.176 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 38.4630 85.9530 46.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.0405 T22: -0.0062 REMARK 3 T33: -0.0864 T12: -0.0648 REMARK 3 T13: -0.0045 T23: 0.0484 REMARK 3 L TENSOR REMARK 3 L11: 0.9526 L22: 1.6545 REMARK 3 L33: 0.3420 L12: 0.6995 REMARK 3 L13: -0.0019 L23: 0.2412 REMARK 3 S TENSOR REMARK 3 S11: 0.1484 S12: -0.1635 S13: -0.0287 REMARK 3 S21: 0.3748 S22: -0.1171 S23: 0.0257 REMARK 3 S31: 0.1167 S32: -0.1190 S33: -0.0313 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): 50.5420 84.4920 25.4940 REMARK 3 T TENSOR REMARK 3 T11: 0.0035 T22: -0.0749 REMARK 3 T33: -0.0359 T12: -0.0070 REMARK 3 T13: -0.0219 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.8149 L22: 0.4602 REMARK 3 L33: 0.7969 L12: 0.3757 REMARK 3 L13: -0.2212 L23: -0.0925 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: 0.0291 S13: -0.1657 REMARK 3 S21: -0.0221 S22: 0.0047 S23: -0.0640 REMARK 3 S31: 0.2019 S32: -0.0227 S33: -0.0199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS.
REMARK 4 REMARK 4 2V2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-07. REMARK 100 THE PDBE ID CODE IS EBI-32767.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89996 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30749 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.75 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 11.35 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 7.0 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.03 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.2 REMARK 200 R MERGE FOR SHELL (I) : 0.01 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.35 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1OJR REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.6 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (V/V) 1,2-PROPANEDIOL, 50 REMARK 280 MM CA ACETATE, 100 MM ACETATE BUFFER (PH 4.5)
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.15100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.15100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.15100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.15100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.15100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.15100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.15100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.15100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 159.45300 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 53.15100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -53.15100 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 159.45300 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 106.30200 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 212.60400 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2112 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2235 LIES ON A SPECIAL POSITION.
REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 192 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 248 TO GLY REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 253 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 254 TO ALA
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2062 O HOH A 2113 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 2 24.80 -66.01 REMARK 500 ASP A 26 58.86 -145.74 REMARK 500 ARG A 28 -128.56 50.75 REMARK 500 ASP A 85 79.69 -155.22 REMARK 500 THR A 115 137.95 -37.69 REMARK 500 HIS A 143 68.94 -100.79 REMARK 500 HIS A 212 -64.33 -146.72 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1275 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 212 NE2 REMARK 620 2 13P A1277A O2 134.6 REMARK 620 3 13P A1277B O2 147.7 18.3 REMARK 620 4 HIS A 143 NE2 101.5 90.7 96.9 REMARK 620 5 HIS A 141 NE2 103.0 117.1 98.9 101.8 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 13P A1277
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GT7 RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM REMARK 900 ESCHERICHIA COLI REMARK 900 RELATED ID: 1OJR RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM REMARK 900 ESCHERICHIA COLI (MUTANT E192A) REMARK 900 RELATED ID: 2UYU RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM REMARK 900 ESCHERICHIA COLI (MUTANT A88F-E192A) REMARK 900 RELATED ID: 2UYV RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM REMARK 900 ESCHERICHIA COLI (MUTANT Q6Y-E192A) REMARK 900 RELATED ID: 2V29 RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM REMARK 900 ESCHERICHIA COLI (MUTANT K15W) REMARK 900 RELATED ID: 2V2B RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM REMARK 900 ESCHERICHIA COLI (MUTANT E117S-E192A-K248G- REMARK 900 R253A-E254A)
DBREF 2V2A A 1 274 UNP P32169 RHAD_ECOLI 1 274
SEQADV 2V2A ALA A 192 UNP P32169 GLU 192 ENGINEERED MUTATION SEQADV 2V2A GLY A 248 UNP P32169 LYS 248 ENGINEERED MUTATION SEQADV 2V2A ALA A 253 UNP P32169 ARG 253 ENGINEERED MUTATION SEQADV 2V2A ALA A 254 UNP P32169 GLU 254 ENGINEERED MUTATION
SEQRES 1 A 274 MET GLN ASN ILE THR GLN SER TRP PHE VAL GLN GLY MET SEQRES 2 A 274 ILE LYS ALA THR THR ASP ALA TRP LEU LYS GLY TRP ASP SEQRES 3 A 274 GLU ARG ASN GLY GLY ASN LEU THR LEU ARG LEU ASP ASP SEQRES 4 A 274 ALA ASP ILE ALA PRO TYR HIS ASP ASN PHE HIS GLN GLN SEQRES 5 A 274 PRO ARG TYR ILE PRO LEU SER GLN PRO MET PRO LEU LEU SEQRES 6 A 274 ALA ASN THR PRO PHE ILE VAL THR GLY SER GLY LYS PHE SEQRES 7 A 274 PHE ARG ASN VAL GLN LEU ASP PRO ALA ALA ASN LEU GLY SEQRES 8 A 274 ILE VAL LYS VAL ASP SER ASP GLY ALA GLY TYR HIS ILE SEQRES 9 A 274 LEU TRP GLY LEU THR ASN GLU ALA VAL PRO THR SER GLU SEQRES 10 A 274 LEU PRO ALA HIS PHE LEU SER HIS CYS GLU ARG ILE LYS SEQRES 11 A 274 ALA THR ASN GLY LYS ASP ARG VAL ILE MET HIS CYS HIS SEQRES 12 A 274 ALA THR ASN LEU ILE ALA LEU THR TYR VAL LEU GLU ASN SEQRES 13 A 274 ASP THR ALA VAL PHE THR ARG GLN LEU TRP GLU GLY SER SEQRES 14 A 274 THR GLU CYS LEU VAL VAL PHE PRO ASP GLY VAL GLY ILE SEQRES 15 A 274 LEU PRO TRP MET VAL PRO GLY THR ASP ALA ILE GLY GLN SEQRES 16 A 274 ALA THR ALA GLN GLU MET GLN LYS HIS SER LEU VAL LEU SEQRES 17 A 274 TRP PRO PHE HIS GLY VAL PHE GLY SER GLY PRO THR LEU SEQRES 18 A 274 ASP GLU THR PHE GLY LEU ILE ASP THR ALA GLU LYS SER SEQRES 19 A 274 ALA GLN VAL LEU VAL LYS VAL TYR SER MET GLY GLY MET SEQRES 20 A 274 GLY GLN THR ILE SER ALA ALA GLU LEU ILE ALA LEU GLY SEQRES 21 A 274 LYS ARG PHE GLY VAL THR PRO LEU ALA SER ALA LEU ALA SEQRES 22 A 274 LEU
HET ZN A1275 1 HET ZN A1276 1 HET 13P A1277 20
HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE HETNAM ZN ZINC ION
FORMUL 2 13P C3 H7 O6 P1 FORMUL 3 ZN 2(ZN 2+) FORMUL 4 HOH *277(H2 O)
HELIX 1 1 ASN A 3 GLN A 6 5 4 HELIX 2 2 SER A 7 GLY A 24 1 18 HELIX 3 3 ASP A 38 ALA A 43 1 6 HELIX 4 4 PRO A 44 PHE A 49 5 6 HELIX 5 5 MET A 62 ALA A 66 5 5 HELIX 6 6 PHE A 78 VAL A 82 5 5 HELIX 7 7 ASP A 85 ASN A 89 1 5 HELIX 8 8 GLU A 117 THR A 132 1 16 HELIX 9 9 ALA A 144 THR A 151 1 8 HELIX 10 10 ASP A 157 GLY A 168 1 12 HELIX 11 11 GLU A 171 PHE A 176 1 6 HELIX 12 12 THR A 190 GLN A 202 1 13 HELIX 13 13 THR A 220 MET A 244 1 25 HELIX 14 14 SER A 252 GLY A 264 1 13 HELIX 15 15 LEU A 268 LEU A 274 1 7
SHEET 1 AA 9 ARG A 54 PRO A 57 0 SHEET 2 AA 9 GLY A 101 GLY A 107 -1 O TYR A 102 N ILE A 56 SHEET 3 AA 9 LEU A 90 VAL A 95 -1 O ILE A 92 N LEU A 105 SHEET 4 AA 9 PRO A 69 THR A 73 -1 O PHE A 70 N VAL A 93 SHEET 5 AA 9 ASN A 32 ARG A 36 -1 O LEU A 33 N THR A 73 SHEET 6 AA 9 VAL A 138 CYS A 142 -1 O ILE A 139 N THR A 34 SHEET 7 AA 9 GLY A 213 GLY A 218 -1 O VAL A 214 N CYS A 142 SHEET 8 AA 9 LEU A 206 TRP A 209 -1 O VAL A 207 N PHE A 215 SHEET 9 AA 9 VAL A 180 ILE A 182 1 O GLY A 181 N LEU A 208
LINK ZN ZN A1275 NE2 HIS A 212 1555 1555 2.07 LINK ZN ZN A1275 O2 A13P A1277 1555 1555 2.18 LINK ZN ZN A1275 O2 B13P A1277 1555 1555 2.07 LINK ZN ZN A1275 NE2 HIS A 143 1555 1555 2.07 LINK ZN ZN A1275 NE2 HIS A 141 1555 1555 2.06 LINK ZN ZN A1276 O HOH A2273 1555 1555 2.24
SITE 1 AC1 4 HIS A 141 HIS A 143 HIS A 212 13P A1277 SITE 1 AC2 3 HIS A 46 ASP A 96 HOH A2273 SITE 1 AC3 18 ASN A 29 GLY A 30 GLY A 31 ASN A 32 SITE 2 AC3 18 SER A 75 GLY A 76 THR A 115 SER A 116 SITE 3 AC3 18 GLU A 117 HIS A 141 HIS A 143 HIS A 212 SITE 4 AC3 18 ZN A1275 HOH A2062 HOH A2274 HOH A2275 SITE 5 AC3 18 HOH A2276 HOH A2277
CRYST1 106.302 106.302 56.439 90.00 90.00 90.00 P 4 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009407 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009407 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017718 0.00000