10 20 30 40 50 60 70 80 2RPJ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 19-MAY-08 2RPJ
TITLE SOLUTION STRUCTURE OF FN14 CRD DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY COMPND 3 MEMBER 12A; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: CRD DOMAIN, UNP RESIDUES 28-70; COMPND 6 SYNONYM: FIBROBLAST GROWTH FACTOR-INDUCIBLE IMMEDIATE- COMPND 7 EARLY RESPONSE PROTEIN 14, FGF-INDUCIBLE 14, TWEAK- COMPND 8 RECEPTOR, TWEAKR, CD266 ANTIGEN; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNFRSF12A, FN14; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P060919-17; SOURCE 9 OTHER_DETAILS: E. COLI - CELL FREE
KEYWDS FN14, ALTERNATIVE SPLICING, ANGIOGENESIS, APOPTOSIS, CELL KEYWDS 2 ADHESION, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, MEMBRANE, KEYWDS 3 RECEPTOR, TRANSMEMBRANE, TRANSCRIPTION, STRUCTURAL GENOMICS, KEYWDS 4 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 5 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 6 INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR F.HE,W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 1 24-MAR-09 2RPJ 0
JRNL AUTH F.HE,W.DANG,K.SAITO,S.WATANABE,N.KOBAYASHI, JRNL AUTH 2 P.GUNTERT,T.KIGAWA,A.TANAKA,Y.MUTO,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CYSTEINE-RICH DOMAIN IN JRNL TITL 2 FN14, A MEMBER OF THE TUMOR NECROSIS FACTOR JRNL TITL 3 RECEPTOR SUPERFAMILY JRNL REF PROTEIN SCI. V. 18 650 2009 JRNL REFN ISSN 0961-8368 JRNL PMID 19241374 JRNL DOI 10.1002/PRO.49
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2RPJ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB150129.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM 13C, 15N-LABELED FN14; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, XWINNMR 3.5, REMARK 210 KUJIRA 0.9839 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 31 -176.42 -69.78 REMARK 500 1 ALA A 34 70.27 -165.85 REMARK 500 1 PRO A 35 78.59 -69.71 REMARK 500 1 ASP A 47 79.77 65.02 REMARK 500 1 HIS A 60 52.03 -111.64 REMARK 500 1 CYS A 67 -74.55 -52.77 REMARK 500 1 ALA A 69 87.22 53.21 REMARK 500 2 SER A 22 85.48 55.46 REMARK 500 2 GLN A 29 84.86 54.60 REMARK 500 2 THR A 33 -39.18 -176.58 REMARK 500 2 ALA A 34 68.18 -151.32 REMARK 500 2 PRO A 35 78.63 -69.75 REMARK 500 2 ASP A 47 79.86 64.98 REMARK 500 2 HIS A 60 54.18 -112.32 REMARK 500 2 CYS A 67 -74.51 -52.12 REMARK 500 3 SER A 23 74.70 -119.95 REMARK 500 3 GLU A 28 88.14 53.60 REMARK 500 3 ALA A 30 160.43 63.26 REMARK 500 3 PRO A 35 78.73 -69.83 REMARK 500 3 ASP A 47 79.82 64.97 REMARK 500 3 HIS A 60 53.60 -111.99 REMARK 500 3 CYS A 67 -74.58 -52.84 REMARK 500 4 SER A 22 96.33 -68.44 REMARK 500 4 SER A 26 91.22 58.58 REMARK 500 4 THR A 33 -42.02 -149.49 REMARK 500 4 PRO A 35 78.65 -69.75 REMARK 500 4 ASP A 47 79.76 65.00 REMARK 500 4 HIS A 60 51.21 -111.38 REMARK 500 4 CYS A 67 -74.57 -52.78 REMARK 500 5 SER A 22 99.03 -61.47 REMARK 500 5 ALA A 34 68.16 -153.52 REMARK 500 5 PRO A 35 78.71 -69.82 REMARK 500 5 ASP A 47 79.73 65.08 REMARK 500 5 HIS A 60 52.53 -111.84 REMARK 500 5 CYS A 67 -74.54 -52.67 REMARK 500 5 ALA A 69 149.26 -174.41 REMARK 500 6 SER A 22 -44.23 -163.54 REMARK 500 6 SER A 25 85.39 56.71 REMARK 500 6 PRO A 35 78.63 -69.79 REMARK 500 6 ASP A 47 79.79 65.02 REMARK 500 6 ARG A 58 70.05 -118.24 REMARK 500 6 HIS A 60 51.51 -111.59 REMARK 500 6 CYS A 67 -74.51 -52.87 REMARK 500 7 SER A 23 94.02 58.84 REMARK 500 7 THR A 33 -39.52 -169.47 REMARK 500 7 ALA A 34 68.14 -155.50 REMARK 500 7 PRO A 35 78.63 -69.76 REMARK 500 7 ASP A 47 79.87 64.95 REMARK 500 7 HIS A 60 51.59 -111.43 REMARK 500 7 CYS A 67 -74.51 -52.93 REMARK 500 8 SER A 26 -175.29 61.24 REMARK 500 8 ALA A 34 68.11 -154.51 REMARK 500 8 PRO A 35 78.66 -69.76 REMARK 500 8 ASP A 47 79.79 65.06 REMARK 500 8 HIS A 60 53.68 -111.98 REMARK 500 8 CYS A 67 -74.53 -52.88 REMARK 500 8 ALA A 69 119.60 -173.35 REMARK 500 9 SER A 23 -62.23 -150.31 REMARK 500 9 SER A 25 74.35 61.59 REMARK 500 9 GLN A 29 32.38 -158.58 REMARK 500 9 THR A 33 -43.77 -133.07 REMARK 500 9 PRO A 35 78.65 -69.74 REMARK 500 9 ASP A 47 79.80 65.04 REMARK 500 9 HIS A 60 51.83 -111.89 REMARK 500 9 CYS A 67 -74.52 -51.97 REMARK 500 10 SER A 23 -61.70 -157.33 REMARK 500 10 GLN A 29 50.64 -115.16 REMARK 500 10 THR A 33 -42.27 -146.25 REMARK 500 10 ALA A 34 68.11 -157.71 REMARK 500 10 PRO A 35 78.67 -69.76 REMARK 500 10 ASP A 47 79.81 65.06 REMARK 500 10 HIS A 60 53.88 -112.16 REMARK 500 10 CYS A 67 -74.56 -52.72 REMARK 500 11 SER A 22 -171.45 59.29 REMARK 500 11 SER A 23 41.41 -103.96 REMARK 500 11 THR A 33 27.11 -155.87 REMARK 500 11 ALA A 34 68.15 -164.44 REMARK 500 11 PRO A 35 78.63 -69.80 REMARK 500 11 ASP A 47 79.79 65.02 REMARK 500 11 HIS A 60 52.05 -111.47 REMARK 500 11 CYS A 67 -74.58 -52.82 REMARK 500 12 SER A 23 66.53 61.11 REMARK 500 12 SER A 26 -171.51 55.91 REMARK 500 12 THR A 33 32.94 -141.55 REMARK 500 12 ALA A 34 68.20 -168.98 REMARK 500 12 PRO A 35 78.65 -69.76 REMARK 500 12 ASP A 47 79.79 65.07 REMARK 500 12 HIS A 60 50.90 -111.58 REMARK 500 12 CYS A 67 -74.57 -52.83 REMARK 500 12 ALA A 69 106.11 -171.75 REMARK 500 13 SER A 22 73.86 -151.42 REMARK 500 13 SER A 26 99.88 -64.99 REMARK 500 13 GLU A 28 -71.04 -78.83 REMARK 500 13 ALA A 30 160.39 63.02 REMARK 500 13 THR A 33 40.10 -95.11 REMARK 500 13 ALA A 34 68.14 -172.04 REMARK 500 13 PRO A 35 78.60 -69.73 REMARK 500 13 ASP A 47 79.75 65.09 REMARK 500 13 ARG A 58 69.52 -119.20 REMARK 500 13 HIS A 60 52.48 -111.76 REMARK 500 13 CYS A 67 -74.53 -52.86 REMARK 500 13 ALA A 69 127.39 -172.46 REMARK 500 14 SER A 22 -69.55 -144.37 REMARK 500 14 SER A 25 -174.51 57.64 REMARK 500 14 SER A 26 130.68 -171.50 REMARK 500 14 THR A 33 -45.94 -131.87 REMARK 500 14 PRO A 35 78.64 -69.77 REMARK 500 14 ASP A 47 79.83 65.07 REMARK 500 14 HIS A 60 51.72 -111.01 REMARK 500 14 CYS A 67 -74.55 -52.81 REMARK 500 15 SER A 22 82.55 60.99 REMARK 500 15 SER A 26 -53.75 -130.83 REMARK 500 15 GLU A 28 141.26 -171.79 REMARK 500 15 ALA A 34 68.14 -152.60 REMARK 500 15 PRO A 35 78.64 -69.78 REMARK 500 15 ASP A 47 79.80 65.06 REMARK 500 15 HIS A 60 51.65 -110.87 REMARK 500 15 CYS A 67 -74.57 -52.81 REMARK 500 15 ALA A 69 -51.54 -128.34 REMARK 500 16 GLN A 29 -60.06 -161.80 REMARK 500 16 ALA A 34 68.10 -169.67 REMARK 500 16 PRO A 35 78.57 -69.68 REMARK 500 16 ASP A 47 79.85 65.01 REMARK 500 16 HIS A 60 52.80 -111.35 REMARK 500 16 CYS A 67 -74.61 -52.66 REMARK 500 17 SER A 22 83.38 -161.94 REMARK 500 17 ALA A 30 160.38 63.38 REMARK 500 17 ALA A 34 68.15 -160.96 REMARK 500 17 PRO A 35 78.61 -69.70 REMARK 500 17 ASP A 47 79.83 65.06 REMARK 500 17 ARG A 58 69.55 -117.02 REMARK 500 17 CYS A 67 -74.49 -52.46 REMARK 500 18 SER A 22 162.34 62.97 REMARK 500 18 SER A 25 105.83 -57.55 REMARK 500 18 SER A 26 -64.99 -131.05 REMARK 500 18 GLU A 28 136.13 -174.72 REMARK 500 18 ALA A 30 160.42 62.88 REMARK 500 18 PRO A 35 81.69 -69.70 REMARK 500 18 ASP A 47 79.86 65.07 REMARK 500 18 HIS A 60 51.61 -112.20 REMARK 500 18 CYS A 67 -74.54 -52.52 REMARK 500 18 ALA A 68 108.17 -58.90 REMARK 500 19 SER A 26 73.06 53.69 REMARK 500 19 GLN A 29 51.04 -147.50 REMARK 500 19 THR A 33 -44.04 -152.59 REMARK 500 19 PRO A 35 78.66 -69.80 REMARK 500 19 ASP A 47 80.06 63.98 REMARK 500 19 HIS A 60 54.34 -112.37 REMARK 500 19 CYS A 67 -74.54 -52.79 REMARK 500 19 ALA A 69 -49.52 -143.08 REMARK 500 20 SER A 23 71.58 55.27 REMARK 500 20 ALA A 30 160.46 63.39 REMARK 500 20 ALA A 34 68.14 -166.62 REMARK 500 20 PRO A 35 78.60 -69.76 REMARK 500 20 ASP A 47 80.10 63.97 REMARK 500 20 HIS A 60 53.68 -111.95 REMARK 500 20 CYS A 67 -74.57 -52.94 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EQP RELATED DB: PDB REMARK 900 WITHOUT DISULFIDE BONDS REMARK 900 RELATED ID: HSG002001058.2 RELATED DB: TARGETDB
DBREF 2RPJ A 28 70 UNP Q9NP84 TNR12_HUMAN 28 70
SEQADV 2RPJ GLY A 21 UNP Q9NP84 EXPRESSION TAG SEQADV 2RPJ SER A 22 UNP Q9NP84 EXPRESSION TAG SEQADV 2RPJ SER A 23 UNP Q9NP84 EXPRESSION TAG SEQADV 2RPJ GLY A 24 UNP Q9NP84 EXPRESSION TAG SEQADV 2RPJ SER A 25 UNP Q9NP84 EXPRESSION TAG SEQADV 2RPJ SER A 26 UNP Q9NP84 EXPRESSION TAG SEQADV 2RPJ GLY A 27 UNP Q9NP84 EXPRESSION TAG
SEQRES 1 A 50 GLY SER SER GLY SER SER GLY GLU GLN ALA PRO GLY THR SEQRES 2 A 50 ALA PRO CYS SER ARG GLY SER SER TRP SER ALA ASP LEU SEQRES 3 A 50 ASP LYS CYS MET ASP CYS ALA SER CYS ARG ALA ARG PRO SEQRES 4 A 50 HIS SER ASP PHE CYS LEU GLY CYS ALA ALA ALA
HELIX 1 2 CYS A 52 ARG A 56 1 5 HELIX 2 3 ASP A 62 CYS A 67 1 6
SHEET 1 A 2 SER A 40 SER A 43 0 SHEET 2 A 2 LYS A 48 ASP A 51 -1 O MET A 50 N SER A 41
SSBOND 1 CYS A 36 CYS A 49 1555 1555 2.00 SSBOND 2 CYS A 52 CYS A 67 1555 1555 2.00 SSBOND 3 CYS A 55 CYS A 64 1555 1555 2.01
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000