2RPH - Header Asymmetric Unit

HEADER DNA 15-MAY-08 2RPH

TITLE RECT-BOUND SSDNA

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*DTP*DAP*DCP*DG)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: NUCLEOTIDE SYNTHESIS

KEYWDS SSDNA, RECT, RECA

EXPDTA SOLUTION NMR

NUMMDL 10

AUTHOR T.MASUDA,Y.ITO,T.SHIBATA,T.MIKAWA

REVDAT 2 05-JAN-10 2RPH 1 JRNL REVDAT 1 26-MAY-09 2RPH 0

JRNL AUTH T.MASUDA,Y.ITO,T.TERADA,T.SHIBATA,T.MIKAWA JRNL TITL A NON-CANONICAL DNA STRUCTURE ENABLES HOMOLOGOUS JRNL TITL 2 RECOMBINATION IN VARIOUS GENETIC SYSTEMS JRNL REF J.BIOL.CHEM. V. 284 30230 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19729448 JRNL DOI 10.1074/JBC.M109.043810

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2RPH COMPLIES WITH FORMAT V. 3.20, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB150127.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM DNA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DT A 1 C6 DT A 1 N1 -0.052 REMARK 500 1 DA A 2 C8 DA A 2 N9 -0.049 REMARK 500 1 DC A 3 N1 DC A 3 C6 -0.039 REMARK 500 1 DG A 4 C8 DG A 4 N9 -0.083 REMARK 500 2 DT A 1 C6 DT A 1 N1 -0.052 REMARK 500 2 DA A 2 C8 DA A 2 N9 -0.048 REMARK 500 2 DC A 3 N1 DC A 3 C6 -0.039 REMARK 500 2 DG A 4 C8 DG A 4 N9 -0.083 REMARK 500 3 DT A 1 C6 DT A 1 N1 -0.054 REMARK 500 3 DA A 2 C8 DA A 2 N9 -0.048 REMARK 500 3 DC A 3 N1 DC A 3 C6 -0.039 REMARK 500 3 DG A 4 C8 DG A 4 N9 -0.082 REMARK 500 4 DT A 1 C6 DT A 1 N1 -0.052 REMARK 500 4 DA A 2 C8 DA A 2 N9 -0.049 REMARK 500 4 DC A 3 N1 DC A 3 C6 -0.040 REMARK 500 4 DG A 4 C8 DG A 4 N9 -0.083 REMARK 500 5 DT A 1 C6 DT A 1 N1 -0.053 REMARK 500 5 DA A 2 C8 DA A 2 N9 -0.049 REMARK 500 5 DC A 3 N1 DC A 3 C6 -0.041 REMARK 500 5 DG A 4 C8 DG A 4 N9 -0.083 REMARK 500 6 DT A 1 C6 DT A 1 N1 -0.053 REMARK 500 6 DC A 3 N1 DC A 3 C6 -0.040 REMARK 500 6 DG A 4 C8 DG A 4 N9 -0.084 REMARK 500 7 DT A 1 C6 DT A 1 N1 -0.053 REMARK 500 7 DC A 3 N1 DC A 3 C6 -0.040 REMARK 500 7 DG A 4 C8 DG A 4 N9 -0.082 REMARK 500 8 DT A 1 C6 DT A 1 N1 -0.052 REMARK 500 8 DA A 2 C8 DA A 2 N9 -0.048 REMARK 500 8 DC A 3 N1 DC A 3 C6 -0.039 REMARK 500 8 DG A 4 C8 DG A 4 N9 -0.082 REMARK 500 9 DT A 1 C6 DT A 1 N1 -0.052 REMARK 500 9 DA A 2 C8 DA A 2 N9 -0.048 REMARK 500 9 DC A 3 N1 DC A 3 C6 -0.039 REMARK 500 9 DG A 4 C8 DG A 4 N9 -0.082 REMARK 500 10 DT A 1 C6 DT A 1 N1 -0.052 REMARK 500 10 DA A 2 C8 DA A 2 N9 -0.048 REMARK 500 10 DC A 3 N1 DC A 3 C6 -0.038 REMARK 500 10 DG A 4 C8 DG A 4 N9 -0.082 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11048 RELATED DB: BMRB REMARK 900 RELATED ID: 2RPD RELATED DB: PDB REMARK 900 RELATED ID: 2RPE RELATED DB: PDB REMARK 900 RELATED ID: 2RPF RELATED DB: PDB

DBREF 2RPH A 1 4 PDB 2RPH 2RPH 1 4

SEQRES 1 A 4 DT DA DC DG

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000