10 20 30 40 50 60 70 80 2RPB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MEMBRANE PROTEIN 13-MAY-08 2RPB
TITLE THE SOLUTION STRUCTURE OF MEMBRANE PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL MEMBRANE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 66-174; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH0470; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-4T3
KEYWDS MEMBRANE PROTEIN, SPFH DOMAIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Y.KUWAHARA,S.UNZAI,T.NAGATA,H.HIROAKI
REVDAT 1 26-MAY-09 2RPB 0
JRNL AUTH Y.KUWAHARA,S.UNZAI,T.NAGATA,H.HIROAKI JRNL TITL THE SOLUTION STRUCTURE OF MEMBRANE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17, MOLMOL 2K.2, SPARKY 3.106 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 KORADI, BILLETER AND WUTHRICH (MOLMOL), GODDARD REMARK 3 (SPARKY) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2RPB COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB150121.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM [U-100% 13C; U-100% REMARK 210 15N] STOMATIN ARCHEA HOMOLOG, REMARK 210 20MM HEPES, 90% H2O/10% D2O; REMARK 210 0.8MM [U-100% 13C] STOMATIN REMARK 210 ARCHEA HOMOLOG, 20MM HEPES, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCANH; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HN(CO)CA; 3D CC(CO)NH; 3D REMARK 210 HCC(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 13C-EDITTED NOESY; 3D 15N- REMARK 210 EDITTED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0.17, NMRPIPE 2.3, REMARK 210 MOLMOL 2K.2, SPARKY 3.106, REMARK 210 XWINNMR 3.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY, TORSION REMARK 210 ANGLE DYNAMICS, RIGID BODY REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 68 41.69 -88.78 REMARK 500 1 CYS A 82 -175.41 -52.08 REMARK 500 1 ASP A 84 35.25 -84.58 REMARK 500 1 ASP A 91 137.35 -171.00 REMARK 500 1 ALA A 104 42.08 -92.57 REMARK 500 1 TYR A 106 31.53 -85.89 REMARK 500 1 VAL A 108 43.96 26.83 REMARK 500 1 MET A 130 -176.49 -172.94 REMARK 500 1 LEU A 132 -32.31 -34.96 REMARK 500 1 GLU A 134 -18.10 -49.93 REMARK 500 1 ASP A 155 -34.13 -38.61 REMARK 500 2 ASP A 64 -60.05 -107.80 REMARK 500 2 LEU A 68 36.24 -95.67 REMARK 500 2 CYS A 82 -174.93 -54.36 REMARK 500 2 VAL A 105 37.05 -95.82 REMARK 500 2 VAL A 108 41.37 35.28 REMARK 500 2 MET A 130 -175.38 -170.98 REMARK 500 2 LEU A 132 -29.76 -36.53 REMARK 500 2 THR A 135 -34.74 -37.74 REMARK 500 2 SER A 137 73.44 -112.80 REMARK 500 3 LEU A 68 37.09 -91.98 REMARK 500 3 ARG A 69 133.98 -37.90 REMARK 500 3 CYS A 82 177.81 -50.37 REMARK 500 3 VAL A 98 92.87 -63.04 REMARK 500 3 ALA A 104 54.95 -95.07 REMARK 500 3 VAL A 108 41.63 33.64 REMARK 500 3 GLN A 120 -34.74 -37.53 REMARK 500 3 MET A 130 -177.38 -172.28 REMARK 500 3 LEU A 132 -30.49 -36.00 REMARK 500 4 ASP A 67 -75.26 -85.48 REMARK 500 4 CYS A 82 -175.27 -53.42 REMARK 500 4 ALA A 104 43.88 -95.77 REMARK 500 4 VAL A 105 40.26 -93.30 REMARK 500 4 VAL A 108 31.51 35.26 REMARK 500 4 MET A 130 -176.45 -172.47 REMARK 500 4 LEU A 132 -34.08 -33.72 REMARK 500 4 ARG A 168 154.02 -45.72 REMARK 500 5 CYS A 82 -176.87 -55.13 REMARK 500 5 ASP A 84 34.35 -83.75 REMARK 500 5 VAL A 98 91.20 -68.46 REMARK 500 5 ALA A 104 43.72 -96.84 REMARK 500 5 VAL A 105 40.22 -90.42 REMARK 500 5 VAL A 108 41.98 27.72 REMARK 500 5 LEU A 112 -70.98 -58.94 REMARK 500 5 MET A 130 -174.99 -173.21 REMARK 500 5 LEU A 132 -29.44 -36.72 REMARK 500 5 SER A 137 -70.30 -70.32 REMARK 500 5 ARG A 145 -72.06 -53.69 REMARK 500 5 ARG A 168 154.33 -41.68 REMARK 500 6 ASP A 67 40.72 -103.24 REMARK 500 6 LEU A 68 26.48 48.29 REMARK 500 6 CYS A 82 -178.40 -63.27 REMARK 500 6 ASP A 84 32.64 -83.70 REMARK 500 6 VAL A 98 91.23 -65.50 REMARK 500 6 VAL A 108 40.59 33.79 REMARK 500 6 SER A 109 -60.02 -95.11 REMARK 500 6 MET A 130 -175.45 -173.70 REMARK 500 6 LEU A 132 -31.52 -35.35 REMARK 500 6 ARG A 168 160.41 -47.42 REMARK 500 6 LYS A 173 156.13 -47.91 REMARK 500 7 ASP A 64 165.03 -44.68 REMARK 500 7 ARG A 69 136.50 -37.84 REMARK 500 7 CYS A 82 -174.86 -51.41 REMARK 500 7 ASP A 84 35.25 -84.44 REMARK 500 7 VAL A 98 93.26 -64.97 REMARK 500 7 PRO A 101 0.37 -69.71 REMARK 500 7 ALA A 104 38.66 -87.11 REMARK 500 7 TYR A 106 35.14 -93.02 REMARK 500 7 VAL A 108 40.98 34.63 REMARK 500 7 MET A 130 -175.29 -173.04 REMARK 500 7 LEU A 132 -29.99 -36.17 REMARK 500 7 SER A 137 40.89 -107.54 REMARK 500 7 TRP A 157 34.35 -84.48 REMARK 500 7 ARG A 168 162.92 -47.99 REMARK 500 8 LEU A 68 34.21 35.38 REMARK 500 8 ARG A 69 109.15 -36.14 REMARK 500 8 CYS A 82 -174.72 -55.35 REMARK 500 8 ASP A 84 32.56 -84.15 REMARK 500 8 VAL A 98 92.16 -56.85 REMARK 500 8 ALA A 104 34.13 -83.78 REMARK 500 8 VAL A 108 36.94 32.80 REMARK 500 8 MET A 130 -175.01 -172.19 REMARK 500 8 LEU A 132 -30.63 -35.81 REMARK 500 8 ARG A 168 157.40 -42.43 REMARK 500 9 CYS A 82 -179.68 -51.03 REMARK 500 9 ASP A 91 135.83 -174.93 REMARK 500 9 VAL A 98 96.39 -63.97 REMARK 500 9 VAL A 105 44.89 -94.75 REMARK 500 9 VAL A 108 39.40 33.26 REMARK 500 9 MET A 130 -176.79 -172.89 REMARK 500 9 LEU A 132 -29.68 -36.61 REMARK 500 9 THR A 135 -34.59 -35.05 REMARK 500 9 ARG A 168 156.09 -44.40 REMARK 500 10 ASP A 64 151.30 -37.21 REMARK 500 10 ARG A 69 142.29 -34.37 REMARK 500 10 CYS A 82 -175.73 -54.44 REMARK 500 10 ALA A 104 43.98 -99.44 REMARK 500 10 VAL A 108 38.90 35.94 REMARK 500 10 MET A 130 -177.85 -172.55 REMARK 500 10 LEU A 132 -32.36 -34.76 REMARK 500 10 THR A 135 -34.17 -33.50 REMARK 500 10 ARG A 145 -74.98 -62.63 REMARK 500 10 LEU A 146 -37.56 -38.15 REMARK 500 11 ARG A 69 95.26 -40.05 REMARK 500 11 CYS A 82 -175.20 -51.36 REMARK 500 11 ASP A 84 34.74 -86.94 REMARK 500 11 ALA A 104 45.80 -104.47 REMARK 500 11 TYR A 106 38.44 -86.49 REMARK 500 11 ASN A 107 27.36 49.20 REMARK 500 11 VAL A 108 40.39 36.09 REMARK 500 11 MET A 130 -178.03 -172.27 REMARK 500 11 LEU A 132 -35.56 -34.42 REMARK 500 12 LEU A 68 45.65 -89.68 REMARK 500 12 CYS A 82 175.53 -51.52 REMARK 500 12 ASP A 84 30.04 -84.98 REMARK 500 12 ALA A 104 43.26 -101.91 REMARK 500 12 VAL A 105 33.72 -87.25 REMARK 500 12 VAL A 108 35.53 33.52 REMARK 500 12 GLN A 120 -33.49 -39.41 REMARK 500 12 MET A 130 -174.99 -173.12 REMARK 500 12 LEU A 132 -35.39 -33.32 REMARK 500 12 TRP A 157 30.29 -84.16 REMARK 500 12 ARG A 168 156.64 -47.52 REMARK 500 13 LEU A 68 46.35 -86.04 REMARK 500 13 CYS A 82 -175.70 -60.20 REMARK 500 13 ASP A 91 134.71 -171.01 REMARK 500 13 VAL A 98 91.05 -52.84 REMARK 500 13 ALA A 104 41.64 -84.45 REMARK 500 13 VAL A 105 47.59 -87.66 REMARK 500 13 VAL A 108 35.15 36.10 REMARK 500 13 MET A 130 -177.18 -171.80 REMARK 500 13 LEU A 132 -34.88 -33.55 REMARK 500 14 ASP A 64 -70.55 -88.18 REMARK 500 14 VAL A 66 149.00 -175.07 REMARK 500 14 ASP A 67 -75.21 -47.31 REMARK 500 14 LEU A 68 34.31 35.72 REMARK 500 14 ARG A 69 174.54 -48.59 REMARK 500 14 CYS A 82 -174.92 -55.36 REMARK 500 14 ASP A 84 37.37 -82.84 REMARK 500 14 VAL A 98 93.87 -67.32 REMARK 500 14 ALA A 104 46.37 -88.20 REMARK 500 14 VAL A 105 30.00 -89.22 REMARK 500 14 VAL A 108 41.15 31.08 REMARK 500 14 MET A 130 -175.89 -172.98 REMARK 500 14 LEU A 132 -32.91 -34.39 REMARK 500 14 GLU A 149 -62.49 -91.17 REMARK 500 15 SER A 63 -60.56 -108.90 REMARK 500 15 ASP A 64 39.04 37.05 REMARK 500 15 ARG A 69 125.87 -33.62 REMARK 500 15 CYS A 82 -179.84 -50.50 REMARK 500 15 ASP A 84 30.63 -84.34 REMARK 500 15 ASP A 91 136.46 -174.86 REMARK 500 15 ALA A 104 45.88 -91.30 REMARK 500 15 VAL A 105 40.45 -90.73 REMARK 500 15 VAL A 108 33.39 34.41 REMARK 500 15 MET A 130 -175.19 -172.61 REMARK 500 15 LEU A 132 -34.05 -33.68 REMARK 500 15 SER A 137 41.50 -93.86 REMARK 500 15 ARG A 168 158.14 -43.13 REMARK 500 16 LEU A 68 39.61 -81.94 REMARK 500 16 CYS A 82 -177.64 -51.11 REMARK 500 16 ALA A 104 47.30 -90.92 REMARK 500 16 VAL A 108 36.95 34.14 REMARK 500 16 MET A 130 -178.34 -173.17 REMARK 500 16 LEU A 132 -34.93 -33.73 REMARK 500 16 SER A 137 46.16 -101.54 REMARK 500 16 ARG A 168 157.22 -45.03 REMARK 500 17 CYS A 82 -177.30 -56.44 REMARK 500 17 ASP A 84 34.39 -85.51 REMARK 500 17 VAL A 98 90.86 -48.88 REMARK 500 17 VAL A 102 -31.79 -36.41 REMARK 500 17 ALA A 104 41.73 -82.27 REMARK 500 17 VAL A 108 39.71 32.97 REMARK 500 17 MET A 130 -175.72 -171.98 REMARK 500 17 LEU A 132 -28.07 -37.53 REMARK 500 17 ARG A 145 -70.10 -61.23 REMARK 500 18 LEU A 68 39.74 -85.88 REMARK 500 18 CYS A 82 -179.84 -49.78 REMARK 500 18 ASP A 84 33.35 -84.96 REMARK 500 18 VAL A 98 94.95 -53.79 REMARK 500 18 ASP A 100 112.64 -165.17 REMARK 500 18 ALA A 104 56.01 -96.73 REMARK 500 18 VAL A 108 40.70 36.66 REMARK 500 18 MET A 130 -175.13 -172.79 REMARK 500 18 LEU A 132 -26.60 -38.29 REMARK 500 19 ARG A 69 137.81 -36.58 REMARK 500 19 CYS A 82 -178.70 -52.33 REMARK 500 19 ASP A 84 37.98 -81.45 REMARK 500 19 ALA A 104 47.82 -86.63 REMARK 500 19 TYR A 106 30.83 -85.26 REMARK 500 19 VAL A 108 41.53 32.57 REMARK 500 19 ASN A 122 -61.56 -91.53 REMARK 500 19 MET A 130 -175.04 -175.54 REMARK 500 19 THR A 135 -33.92 -33.30 REMARK 500 19 TRP A 157 34.85 -88.23 REMARK 500 19 ARG A 163 -179.93 -170.99 REMARK 500 20 CYS A 82 -174.63 -53.11 REMARK 500 20 ASP A 84 36.71 -82.89 REMARK 500 20 VAL A 98 95.84 -51.68 REMARK 500 20 ASP A 100 109.59 -161.22 REMARK 500 20 VAL A 102 -39.51 -34.83 REMARK 500 20 ALA A 104 49.83 -94.23 REMARK 500 20 VAL A 108 41.58 33.65 REMARK 500 20 MET A 130 -175.09 -172.55 REMARK 500 20 LEU A 132 -33.66 -33.89 REMARK 500 20 ARG A 147 -36.74 -36.19 REMARK 500 20 ARG A 168 160.95 -49.56 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2RPB A 66 174 UNP O58205 O58205_PYRHO 66 174
SEQADV 2RPB GLY A 62 UNP O58205 EXPRESSION TAG SEQADV 2RPB SER A 63 UNP O58205 EXPRESSION TAG SEQADV 2RPB ASP A 64 UNP O58205 EXPRESSION TAG SEQADV 2RPB HIS A 65 UNP O58205 EXPRESSION TAG
SEQRES 1 A 113 GLY SER ASP HIS VAL ASP LEU ARG GLU HIS VAL ILE ASP SEQRES 2 A 113 VAL PRO PRO GLN GLU VAL ILE CYS LYS ASP ASN VAL VAL SEQRES 3 A 113 VAL THR VAL ASP ALA VAL VAL TYR TYR GLN VAL ILE ASP SEQRES 4 A 113 PRO VAL LYS ALA VAL TYR ASN VAL SER ASP PHE LEU MET SEQRES 5 A 113 ALA ILE VAL LYS LEU ALA GLN THR ASN LEU ARG ALA ILE SEQRES 6 A 113 ILE GLY GLU MET GLU LEU ASP GLU THR LEU SER GLY ARG SEQRES 7 A 113 ASP ILE ILE ASN ALA ARG LEU ARG GLU GLU LEU ASP LYS SEQRES 8 A 113 ILE THR ASP ARG TRP GLY VAL LYS ILE THR ARG VAL GLU SEQRES 9 A 113 ILE GLN ARG ILE ASP PRO PRO LYS ASP
HELIX 1 1 SER A 109 GLY A 128 1 20 HELIX 2 2 ASP A 133 GLY A 138 1 6 HELIX 3 3 GLY A 138 ASP A 155 1 18
SHEET 1 A 3 HIS A 71 ASP A 74 0 SHEET 2 A 3 ALA A 92 VAL A 98 -1 O TYR A 96 N HIS A 71 SHEET 3 A 3 VAL A 159 LYS A 160 -1 O LYS A 160 N GLN A 97 SHEET 1 B 3 HIS A 71 ASP A 74 0 SHEET 2 B 3 ALA A 92 VAL A 98 -1 O TYR A 96 N HIS A 71 SHEET 3 B 3 VAL A 164 ILE A 166 -1 O GLU A 165 N VAL A 93 SHEET 1 C 2 GLN A 78 ILE A 81 0 SHEET 2 C 2 VAL A 87 VAL A 90 -1 O VAL A 88 N VAL A 80
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000