10 20 30 40 50 60 70 80 2ROY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT 23-OCT-96 2ROY
TITLE TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3',5'-DINITRO-N- TITLE 2 ACETYL-L-THYRONINE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PREALBUMIN
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: PLASMA; SOURCE 6 TISSUE: PLASMA
KEYWDS ALBUMIN, TRANSPORT, RETINOL-BINDING, VITAMIN A, AMYLOID, THYROID KEYWDS 2 HORMONE, LIVER, PLASMA, CEREBROSPINAL FLUID, POLYNEUROPATHY, DISEASE KEYWDS 3 MUTATION, THYROXINE, PREALBUMIN
EXPDTA X-RAY DIFFRACTION
AUTHOR A.WOJTCZAK,V.CODY,J.R.LUFT,W.PANGBORN
REVDAT 3 13-JUL-11 2ROY 1 VERSN REVDAT 2 24-FEB-09 2ROY 1 VERSN REVDAT 1 21-APR-97 2ROY 0
SPRSDE 21-APR-97 2ROY 1ROY
JRNL AUTH A.WOJTCZAK,V.CODY,J.R.LUFT,W.PANGBORN JRNL TITL STRUCTURES OF HUMAN TRANSTHYRETIN COMPLEXED WITH THYROXINE JRNL TITL 2 AT 2.0 A RESOLUTION AND 3',5'-DINITRO-N-ACETYL-L-THYRONINE JRNL TITL 3 AT 2.2 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 52 758 1996 JRNL REFN ISSN 0907-4449 JRNL PMID 15299640 JRNL DOI 10.1107/S0907444996003046
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.WOJTCZAK,J.R.LUFT,V.CODY REMARK 1 TITL STRUCTURAL ASPECTS OF INOTROPIC BIPYRIDINE BINDING. CRYSTAL REMARK 1 TITL 2 STRUCTURE DETERMINATION TO 1.9 A OF THE HUMAN SERUM REMARK 1 TITL 3 TRANSTHYRETIN-MILRINONE COMPLEX REMARK 1 REF J.BIOL.CHEM. V. 268 6202 1993 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.WOJTCZAK,J.LUFT,V.CODY REMARK 1 TITL MECHANISM OF MOLECULAR RECOGNITION. STRUCTURAL ASPECTS OF REMARK 1 TITL 2 3,3'-DIIODO-L-THYRONINE BINDING TO HUMAN SERUM TRANSTHYRETIN REMARK 1 REF J.BIOL.CHEM. V. 267 353 1992 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH E.CISZAK,V.CODY,J.R.LUFT REMARK 1 TITL CRYSTAL STRUCTURE DETERMINATION AT 2.3-A RESOLUTION OF HUMAN REMARK 1 TITL 2 TRANSTHYRETIN-3',5'-DIBROMO-2',4,4',6-TETRAHYDROXYAURONE REMARK 1 TITL 3 COMPLEX REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 89 6644 1992 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH C.C.BLAKE,S.J.OATLEY REMARK 1 TITL PROTEIN-DNA AND PROTEIN-HORMONE INTERACTIONS IN PREALBUMIN: REMARK 1 TITL 2 A MODEL OF THE THYROID HORMONE NUCLEAR RECEPTOR? REMARK 1 REF NATURE V. 268 115 1977 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 5 REMARK 1 EDIT R.J.FELDMANN REMARK 1 REF ATLAS OF MACROMOLECULAR 549 1976 REMARK 1 REF 2 STRUCTURE ON MICROFICHE REMARK 1 PUBL ROCKVILLE, MD. : TRACOR JITCO INC. REMARK 1 REFN REMARK 1 REFERENCE 6 REMARK 1 EDIT M.O.DAYHOFF REMARK 1 REF ATLAS OF PROTEIN SEQUENCE V. 5 265 1976 REMARK 1 REF 2 AND STRUCTURE (DATA SECTION) REMARK 1 PUBL SILVER SPRING, MD. : NATIONAL BIOMEDICAL RESEARCH FOUNDATION REMARK 1 REFN REMARK 1 REFERENCE 7 REMARK 1 AUTH C.C.F.BLAKE,M.J.GEISOW,I.D.SWAN,C.RERAT,B.RERAT REMARK 1 TITL STRUCTURE OF HUMAN PLASMA PREALBUMIN AT 2.5 A RESOLUTION. A REMARK 1 TITL 2 PRELIMINARY REPORT ON THE POLYPEPTIDE CHAIN CONFORMATION, REMARK 1 TITL 3 QUATERNARY STRUCTURE AND THYROXINE BINDING REMARK 1 REF J.MOL.BIOL. V. 88 1 1974 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 8 REMARK 1 AUTH C.C.BLAKE,I.D.SWAN,C.RERAT,J.BERTHOU,A.LAURENT,B.RERAT REMARK 1 TITL AN X-RAY STUDY OF THE SUBUNIT STRUCTURE OF PREALBUMIN REMARK 1 REF J.MOL.BIOL. V. 61 217 1971 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 9664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.060 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.070 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.020 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.200 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.230 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.300 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : 0.330 ; 0.500 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.200 ; 5.000 REMARK 3 STAGGERED (DEGREES) : 21.200; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 18.600; 15.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.720 ; 1.750 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.660 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.030 ; 1.750 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.100 ; 2.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE MODEL CONTAINS THE 3', 5'-DINITRO-N-ACETYL-THYRONINE REMARK 3 MOLECULE IN BOTH BINDING SITES. THE OCCUPANCY OF 50% REMARK 3 REFLECTS THE PRESENCE OF CRYSTALLOGRAPHIC TWO-FOLD REMARK 3 AXIS CAUSING STATISTICAL DISORDER OF THE LIGAND, REMARK 3 AND CORRESPONDS TO SATURATION OF THE BINDING SITES.
REMARK 4 REMARK 4 2ROY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.81050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.02050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.81050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.02050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 43.62100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 86.04100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C4' P28 B 128 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 LYS B 126 REMARK 465 GLU B 127
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 147 O HOH B 148 1.99 REMARK 500 NH2 ARG B 21 OH TYR B 78 2.01 REMARK 500 OH TYR A 116 O HOH A 167 2.11 REMARK 500 OD2 ASP B 18 NH2 ARG B 21 2.14 REMARK 500 OD2 ASP B 74 OG SER B 77 2.15 REMARK 500 OE2 GLU B 72 O HOH B 158 2.16 REMARK 500 O HOH B 152 O HOH B 161 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 10 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 MET A 13 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 ASP A 18 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 21 CD - NE - CZ ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ALA A 37 CB - CA - C ANGL. DEV. = 9.1 DEGREES REMARK 500 PHE A 44 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 PHE A 44 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 GLU A 61 OE1 - CD - OE2 ANGL. DEV. = 7.7 DEGREES REMARK 500 GLU A 61 CG - CD - OE2 ANGL. DEV. = -13.7 DEGREES REMARK 500 TYR A 78 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TYR A 78 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 PRO A 86 N - CA - CB ANGL. DEV. = -7.4 DEGREES REMARK 500 VAL A 93 CA - CB - CG1 ANGL. DEV. = 10.1 DEGREES REMARK 500 ASP A 99 CB - CG - OD2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 104 CD - NE - CZ ANGL. DEV. = -10.5 DEGREES REMARK 500 TYR A 105 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TYR A 116 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 LYS B 9 N - CA - CB ANGL. DEV. = 13.3 DEGREES REMARK 500 CYS B 10 N - CA - CB ANGL. DEV. = 9.5 DEGREES REMARK 500 VAL B 16 CG1 - CB - CG2 ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 38 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP B 39 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 GLU B 42 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 GLU B 51 OE1 - CD - OE2 ANGL. DEV. = 13.0 DEGREES REMARK 500 GLU B 61 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 GLU B 62 CB - CG - CD ANGL. DEV. = 41.1 DEGREES REMARK 500 GLU B 62 CG - CD - OE1 ANGL. DEV. = 13.9 DEGREES REMARK 500 GLU B 72 OE1 - CD - OE2 ANGL. DEV. = 7.6 DEGREES REMARK 500 GLU B 72 CG - CD - OE2 ANGL. DEV. = -13.6 DEGREES REMARK 500 SER B 77 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 ALA B 91 N - CA - CB ANGL. DEV. = 8.5 DEGREES REMARK 500 GLU B 92 OE1 - CD - OE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ALA B 97 CB - CA - C ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP B 99 N - CA - CB ANGL. DEV. = 16.7 DEGREES REMARK 500 ASP B 99 CA - C - N ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG B 103 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 THR B 106 O - C - N ANGL. DEV. = 12.5 DEGREES REMARK 500 ALA B 109 CB - CA - C ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 8 125.79 -33.99 REMARK 500 LYS A 9 -35.15 175.41 REMARK 500 ALA A 36 -177.61 -66.43 REMARK 500 ASP A 39 31.67 73.10 REMARK 500 SER A 100 50.49 -105.85 REMARK 500 LYS A 126 -41.02 -173.40 REMARK 500 LYS B 9 132.70 -27.31 REMARK 500 ASN B 27 34.23 73.56 REMARK 500 ASP B 38 -7.29 -43.94 REMARK 500 PHE B 44 -48.53 -137.71 REMARK 500 SER B 50 -160.80 -72.62 REMARK 500 SER B 100 16.61 -160.65 REMARK 500 PRO B 102 127.97 -33.97 REMARK 500 ARG B 103 -78.97 -101.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 21 0.11 SIDE CHAIN REMARK 500 ARG B 104 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 98 24.2 L L OUTSIDE RANGE REMARK 500 PRO B 24 45.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 145 DISTANCE = 6.03 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: A1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NO DESCRIPTION PROVIDED REMARK 800 REMARK 800 SITE_IDENTIFIER: B1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NO DESCRIPTION PROVIDED REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P28 A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P28 B 128
DBREF 2ROY A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 2ROY B 1 127 UNP P02766 TTHY_HUMAN 21 147
SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU
HET P28 A 128 29 HET P28 B 128 29
HETNAM P28 3',5'-DINITRO-N-ACETYL-L-THYRONINE
FORMUL 3 P28 2(C17 H15 N3 O9) FORMUL 5 HOH *82(H2 O)
HELIX 1 1 THR A 75 GLY A 83 1 9 HELIX 2 2 THR B 75 GLY B 83 1 9
SHEET 1 IA 4 GLY A 53 LEU A 55 0 SHEET 2 IA 4 PRO A 11 ALA A 19 -1 O VAL A 14 N LEU A 55 SHEET 3 IA 4 TYR A 105 SER A 112 1 N ILE A 107 O MET A 13 SHEET 4 IA 4 TYR A 114 VAL A 121 -1 N THR A 119 O ALA A 108 SHEET 1 IB 4 GLY B 53 LEU B 55 0 SHEET 2 IB 4 PRO B 11 ALA B 19 -1 O VAL B 14 N LEU B 55 SHEET 3 IB 4 TYR B 105 SER B 112 1 N ILE B 107 O MET B 13 SHEET 4 IB 4 TYR B 114 VAL B 121 -1 N THR B 119 O ALA B 108 SHEET 1 X1A 4 GLU A 42 GLU A 42 0 SHEET 2 X1A 4 VAL A 28 LYS A 35 -1 O ARG A 34 N GLU A 42 SHEET 3 X1A 4 GLY A 67 ASP A 74 -1 N GLU A 72 O HIS A 31 SHEET 4 X1A 4 ALA A 91 ALA A 97 -1 N VAL A 93 O VAL A 71 SHEET 1 X2A 4 ALA A 45 THR A 49 0 SHEET 2 X2A 4 VAL A 28 LYS A 35 -1 O VAL A 30 N GLY A 47 SHEET 3 X2A 4 GLY A 67 ASP A 74 -1 N GLU A 72 O HIS A 31 SHEET 4 X2A 4 ALA A 91 ALA A 97 -1 N VAL A 93 O VAL A 71 SHEET 1 X1B 4 GLU B 42 GLU B 42 0 SHEET 2 X1B 4 VAL B 28 LYS B 35 -1 O ARG B 34 N GLU B 42 SHEET 3 X1B 4 GLY B 67 ASP B 74 -1 N GLU B 72 O HIS B 31 SHEET 4 X1B 4 ALA B 91 ALA B 97 -1 N VAL B 93 O VAL B 71 SHEET 1 X2B 4 ALA B 45 THR B 49 0 SHEET 2 X2B 4 VAL B 28 LYS B 35 -1 O VAL B 30 N GLY B 47 SHEET 3 X2B 4 GLY B 67 ASP B 74 -1 N GLU B 72 O HIS B 31 SHEET 4 X2B 4 ALA B 91 ALA B 97 -1 N VAL B 93 O VAL B 71
SITE 1 A1 13 LYS A 15 VAL A 16 LEU A 17 THR A 106 SITE 2 A1 13 ILE A 107 ALA A 108 ALA A 109 LEU A 110 SITE 3 A1 13 SER A 117 THR A 118 THR A 119 ALA A 120 SITE 4 A1 13 VAL A 121 SITE 1 B1 13 LYS B 15 VAL B 16 LEU B 17 THR B 106 SITE 2 B1 13 ILE B 107 ALA B 108 ALA B 109 LEU B 110 SITE 3 B1 13 SER B 117 THR B 118 THR B 119 ALA B 120 SITE 4 B1 13 VAL B 121 SITE 1 AC1 7 LYS A 15 LEU A 17 ALA A 108 LEU A 110 SITE 2 AC1 7 SER A 117 THR A 118 THR A 119 SITE 1 AC2 8 LYS B 15 LEU B 17 ALA B 108 ALA B 109 SITE 2 AC2 8 LEU B 110 SER B 117 THR B 118 THR B 119
CRYST1 43.621 86.041 64.953 90.00 90.00 90.00 P 21 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022925 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011622 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015396 0.00000