10 20 30 40 50 60 70 80 2ROL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SPLICING/SIGNALING PROTEIN 02-APR-08 2ROL
TITLE STRUCTURAL BASIS OF PXXDY MOTIF RECOGNITION IN SH3 BINDING
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR KINASE COMPND 3 SUBSTRATE 8-LIKE PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SH3 DOMAIN; COMPND 6 SYNONYM: EPIDERMAL GROWTH FACTOR RECEPTOR PATHWAY COMPND 7 SUBSTRATE 8-RELATED PROTEIN 1, EPS8-LIKE PROTEIN 1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 12-MERIC PEPTIDE FROM T-CELL SURFACE COMPND 11 GLYCOPROTEIN CD3 EPSILON CHAIN; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: T-CELL SURFACE ANTIGEN T3/LEU-4 EPSILON CHAIN; COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPS8L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC CONSTRUCT; THIS SEQUENCE OCCURS SOURCE 13 NATURALLY IN HUMANS.
KEYWDS EPS8L1, CD3E, SH3, NMR, COMPLEX STRUCTURE, ALTERNATIVE KEYWDS 2 SPLICING, COILED COIL, CYTOPLASM, SH3 DOMAIN, KEYWDS 3 IMMUNOGLOBULIN DOMAIN, MEMBRANE, PHOSPHOPROTEIN, RECEPTOR, KEYWDS 4 TRANSMEMBRANE, SPLICING/SIGNALING PROTEIN COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR O.AITIO,M.HELLMAN,T.KESTI,I.KLEINO,O.SAMUILOVA, AUTHOR 2 H.TOSSAVAINEN,K.PAAKKONEN,K.SAKSELA,P.PERMI
REVDAT 1 03-MAR-09 2ROL 0
JRNL AUTH O.AITIO,M.HELLMAN,T.KESTI,I.KLEINO,O.SAMUILOVA, JRNL AUTH 2 K.PAAKKONEN,H.TOSSAVAINEN,K.SAKSELA,P.PERMI JRNL TITL STRUCTURAL BASIS OF PXXDY MOTIF RECOGNITION IN SH3 JRNL TITL 2 BINDING JRNL REF J.MOL.BIOL. V. 382 167 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18644376 JRNL DOI 10.1016/J.JMB.2008.07.008
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2ROL COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-08. REMARK 100 THE RCSB ID CODE IS RCSB150099.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM [U-98% 13C; U-98% 15N] REMARK 210 EPS8L1SH3; 2.4MM CD3E PEPTIDE; REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D HNCA, 3D HN(CO)CA, 3D REMARK 210 HNCACB, 3D CBCA(CO)NH, 3D REMARK 210 IHNCACB, 3D HCCH-COSY, 3D REMARK 210 CC(CO)NH, 3D H(CCO)NH, 2D (HB) REMARK 210 CB(CGCD)HD, 2D (HB)CB(CGCDCE) REMARK 210 HE, 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY, 3D 1H-15N NOESY REMARK 210 FILTEDED/EDITED, 3D 1H-13C REMARK 210 NOESY FILTERED/EDITED REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0, SPARKY, VNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 ARG A 518 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 20 ARG A 512 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 479 -35.84 -152.19 REMARK 500 1 ASP A 510 37.77 -145.23 REMARK 500 1 VAL B 540 70.44 60.02 REMARK 500 1 PRO B 541 -171.38 -68.15 REMARK 500 2 THR A 478 -33.31 -132.70 REMARK 500 2 ASP A 510 39.93 -141.83 REMARK 500 2 VAL B 540 78.48 63.87 REMARK 500 3 ASP A 510 46.20 -144.99 REMARK 500 3 VAL B 540 72.81 60.28 REMARK 500 4 ASP A 510 50.35 -141.42 REMARK 500 4 PRO B 541 -176.00 -65.88 REMARK 500 5 ASP A 510 58.03 -144.76 REMARK 500 5 VAL B 540 70.15 52.76 REMARK 500 5 PRO B 541 -178.24 -64.63 REMARK 500 6 THR A 478 101.74 -53.63 REMARK 500 6 ASP A 510 44.93 -148.59 REMARK 500 6 VAL B 540 75.89 67.04 REMARK 500 6 TYR B 545 -169.90 -77.75 REMARK 500 7 ASP A 510 41.72 -149.18 REMARK 500 7 VAL B 540 82.37 46.50 REMARK 500 8 ASP A 510 40.36 -143.06 REMARK 500 8 PRO A 520 27.93 -75.45 REMARK 500 8 ALA A 521 -36.96 -135.34 REMARK 500 8 VAL B 540 72.43 59.63 REMARK 500 8 PRO B 541 -171.65 -67.78 REMARK 500 9 ASP A 510 44.54 -143.55 REMARK 500 9 PRO A 520 25.67 -75.91 REMARK 500 9 ALA A 521 -39.22 -133.19 REMARK 500 9 VAL B 540 72.39 59.79 REMARK 500 9 PRO B 541 -172.52 -68.91 REMARK 500 10 ASP A 510 49.37 -145.93 REMARK 500 10 PRO A 520 29.46 -76.59 REMARK 500 10 ALA A 521 -39.70 -136.22 REMARK 500 10 VAL B 540 73.74 61.76 REMARK 500 10 PRO B 541 -168.20 -69.45 REMARK 500 11 ASN B 542 152.31 -48.13 REMARK 500 12 ASP A 510 40.84 -142.88 REMARK 500 12 PRO A 520 27.78 -75.66 REMARK 500 12 ALA A 521 -39.13 -135.60 REMARK 500 12 VAL B 540 72.94 62.37 REMARK 500 12 PRO B 541 -175.88 -64.97 REMARK 500 13 THR A 478 -25.17 -142.60 REMARK 500 13 ASP A 510 44.41 -144.20 REMARK 500 13 PRO B 541 -167.58 -76.61 REMARK 500 14 LYS A 481 -177.77 -174.25 REMARK 500 14 ASP A 510 43.30 -148.36 REMARK 500 14 VAL B 540 71.58 56.75 REMARK 500 14 PRO B 541 -178.59 -65.14 REMARK 500 14 GLU B 546 64.56 -152.50 REMARK 500 15 THR A 478 87.22 -60.75 REMARK 500 15 ASP A 510 46.05 -141.36 REMARK 500 15 PRO B 541 -168.43 -77.72 REMARK 500 16 THR A 478 -72.89 -103.98 REMARK 500 16 ASP A 510 21.39 -144.76 REMARK 500 16 ASN B 542 150.15 -47.24 REMARK 500 17 ASP A 510 34.89 -144.76 REMARK 500 17 PRO A 520 22.06 -75.81 REMARK 500 17 ALA A 521 -37.43 -130.12 REMARK 500 17 ASP B 544 -178.70 -69.59 REMARK 500 18 ASP A 510 46.68 -143.42 REMARK 500 18 ASN B 542 130.11 -39.26 REMARK 500 18 ASP B 544 -179.70 -67.24 REMARK 500 19 SER A 475 73.47 -113.06 REMARK 500 19 ASP A 510 45.35 -143.93 REMARK 500 19 PRO A 520 30.36 -75.67 REMARK 500 19 ALA A 521 -40.20 -136.74 REMARK 500 19 PRO B 541 -167.62 -78.65 REMARK 500 20 MET A 476 -48.42 -141.11 REMARK 500 20 ASP A 510 33.83 -143.74 REMARK 500 20 PRO A 520 28.73 -76.55 REMARK 500 20 ALA A 521 -39.21 -134.72 REMARK 500 20 VAL B 540 72.37 49.49 REMARK 500 20 PRO B 541 -179.23 -64.50 REMARK 500 20 TYR B 545 13.22 58.25 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11040 RELATED DB: BMRB
DBREF 2ROL A 478 537 UNP Q8TE68 ES8L1_HUMAN 478 537 DBREF 2ROL B 538 549 UNP P07766 CD3E_HUMAN 181 192
SEQADV 2ROL GLY A 474 UNP Q8TE68 EXPRESSION TAG SEQADV 2ROL SER A 475 UNP Q8TE68 EXPRESSION TAG SEQADV 2ROL MET A 476 UNP Q8TE68 EXPRESSION TAG SEQADV 2ROL GLY A 477 UNP Q8TE68 EXPRESSION TAG
SEQRES 1 A 64 GLY SER MET GLY THR ALA GLY LYS TRP VAL LEU CYS ASN SEQRES 2 A 64 TYR ASP PHE GLN ALA ARG ASN SER SER GLU LEU SER VAL SEQRES 3 A 64 LYS GLN ARG ASP VAL LEU GLU VAL LEU ASP ASP SER ARG SEQRES 4 A 64 LYS TRP TRP LYS VAL ARG ASP PRO ALA GLY GLN GLU GLY SEQRES 5 A 64 TYR VAL PRO TYR ASN ILE LEU THR PRO TYR PRO GLY SEQRES 1 B 12 PRO PRO VAL PRO ASN PRO ASP TYR GLU PRO ILE ARG
SHEET 1 A 5 GLU A 524 PRO A 528 0 SHEET 2 A 5 TRP A 514 ARG A 518 -1 N TRP A 515 O VAL A 527 SHEET 3 A 5 VAL A 504 ASP A 509 -1 N LEU A 508 O LYS A 516 SHEET 4 A 5 TRP A 482 CYS A 485 -1 N VAL A 483 O LEU A 505 SHEET 5 A 5 LEU A 532 PRO A 534 -1 O THR A 533 N LEU A 484
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000