10 20 30 40 50 60 70 80 2ROD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER APOPTOSIS 17-MAR-08 2ROD
TITLE SOLUTION STRUCTURE OF MCL-1 COMPLEXED WITH NOXAA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION COMPND 3 PROTEIN MCL-1 HOMOLOG; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 152-308; COMPND 6 SYNONYM: BCL-2-RELATED PROTEIN EAT/MCL1, MCL-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NOXA; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 17-42; COMPND 12 SYNONYM: NOXAA; COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 GENE: MCL-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX6P-3; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 GENE: NOXA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET-31B
KEYWDS MCL-1, NOXAA, APOPTOSIS, BH3-ONLY, BCL-2, CYTOPLASM, KEYWDS 2 DEVELOPMENTAL PROTEIN, DIFFERENTIATION, MEMBRANE, KEYWDS 3 MITOCHONDRION, NUCLEUS, PHOSPHOPROTEIN, TRANSMEMBRANE, UBL KEYWDS 4 CONJUGATION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.L.DAY,C.SMITS,F.C.FAN,E.F.LEE,W.D.FAIRLIE,M.G.HINDS
REVDAT 2 24-FEB-09 2ROD 1 VERSN REVDAT 1 08-JUL-08 2ROD 0
JRNL AUTH C.L.DAY,C.SMITS,F.C.FAN,E.F.LEE,W.D.FAIRLIE, JRNL AUTH 2 M.G.HINDS JRNL TITL STRUCTURE OF THE BH3 DOMAINS FROM THE JRNL TITL 2 P53-INDUCIBLE BH3-ONLY PROTEINS NOXA AND PUMA IN JRNL TITL 3 COMPLEX WITH MCL-1 JRNL REF J.MOL.BIOL. V. 380 958 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18589438 JRNL DOI 10.1016/J.JMB.2008.05.071
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE CALCULATED BASED REMARK 3 ON A TOTAL OF 3355 CONSTRAINTS. 2662 ARE NOE DERIVED AND 184 REMARK 3 OF THESE ARE INTERMOLECULAR. A TOTAL OF 325 DIHEDRAL ANGLE REMARK 3 CONSTRAINTS WERE USED AND 184 HYDROGEN BONDS.
REMARK 4 REMARK 4 2ROD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAR-08. REMARK 100 THE RCSB ID CODE IS RCSB150091.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 120 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM [U-100% 13C; U-100% REMARK 210 15N] MCL-1; 0.5MM NOXAA; 95% REMARK 210 H2O/5% D2O; 0.5MM MCL-1; 0.5MM REMARK 210 [U-100% 13C; U-100% 15N] REMARK 210 NOXAA; 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY, 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, XEASY 1.3, CYANA REMARK 210 2.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 256 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STANDARD 3D HETERONUCLEAR NMR METHODS WERE USED FOR REMARK 210 RESONANCE ASSIGNMENT
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 151 -70.92 -149.53 REMARK 500 1 HIS A 205 32.75 -96.59 REMARK 500 1 LYS A 219 -16.76 -150.41 REMARK 500 1 LYS A 283 40.76 -141.02 REMARK 500 1 ASP A 304 61.47 -170.83 REMARK 500 1 LEU A 305 -57.85 -141.53 REMARK 500 1 GLU A 306 46.02 -151.26 REMARK 500 1 PRO B 21 45.21 -63.94 REMARK 500 2 GLU A 152 103.07 -33.16 REMARK 500 2 LYS A 219 4.69 -161.27 REMARK 500 2 PHE A 300 30.73 -90.87 REMARK 500 2 HIS A 301 58.68 -110.06 REMARK 500 2 VAL A 302 -84.69 -98.48 REMARK 500 2 GLN A 303 119.08 -170.65 REMARK 500 2 ASP A 304 -82.22 -145.96 REMARK 500 2 PRO B 21 8.91 -67.57 REMARK 500 3 SER A 174 -168.61 -102.43 REMARK 500 3 LYS A 219 -43.57 -134.33 REMARK 500 3 PRO B 21 6.38 -64.32 REMARK 500 4 THR A 172 33.41 -147.14 REMARK 500 4 LYS A 175 17.42 -142.83 REMARK 500 4 ASP A 176 -159.07 -129.48 REMARK 500 4 ASP A 217 32.07 -83.25 REMARK 500 4 LYS A 219 -24.45 -140.92 REMARK 500 4 PHE A 300 33.23 -80.36 REMARK 500 4 VAL A 302 74.10 -66.74 REMARK 500 5 GLU A 152 -63.67 -142.90 REMARK 500 5 LYS A 175 -68.11 -166.76 REMARK 500 5 PRO A 179 -169.16 -68.87 REMARK 500 5 ILE A 218 106.93 -55.33 REMARK 500 5 LYS A 219 -42.19 -143.48 REMARK 500 5 GLN A 264 39.00 -87.83 REMARK 500 5 ARG A 291 13.91 59.09 REMARK 500 5 GLN A 303 -80.37 -87.99 REMARK 500 5 PRO B 21 35.55 -68.99 REMARK 500 6 LEU A 149 149.64 -170.86 REMARK 500 6 ILE A 218 105.93 -59.33 REMARK 500 6 LYS A 219 -65.64 -159.56 REMARK 500 6 GLN A 264 36.61 -91.54 REMARK 500 6 PRO B 21 47.23 -65.14 REMARK 500 7 GLU A 152 -30.56 -138.93 REMARK 500 7 GLU A 182 75.46 4.46 REMARK 500 7 ALA A 183 72.96 -169.00 REMARK 500 7 LYS A 219 -42.60 -135.08 REMARK 500 7 LYS A 283 41.76 -142.26 REMARK 500 7 GLU B 18 -74.23 -142.94 REMARK 500 7 PRO B 21 27.57 -69.04 REMARK 500 7 PRO B 41 65.33 -69.21 REMARK 500 8 GLU A 152 -72.76 -117.19 REMARK 500 8 LYS A 175 95.90 -165.56 REMARK 500 8 SER A 177 -63.14 -162.93 REMARK 500 8 PRO A 179 -157.21 -74.23 REMARK 500 8 GLU A 182 -65.22 -98.27 REMARK 500 8 ILE A 218 106.72 -59.47 REMARK 500 8 LYS A 219 -68.78 -154.97 REMARK 500 8 LYS A 283 40.83 -141.23 REMARK 500 8 ASP A 304 96.70 -67.86 REMARK 500 8 PRO B 21 45.95 -65.56 REMARK 500 8 PRO B 41 49.76 -82.24 REMARK 500 9 PRO A 148 -179.16 -66.91 REMARK 500 9 SER A 151 -68.59 -171.50 REMARK 500 9 SER A 174 -92.78 -155.69 REMARK 500 9 ASP A 217 33.69 -80.40 REMARK 500 9 LYS A 219 -53.69 -163.07 REMARK 500 9 PHE A 300 30.01 -98.47 REMARK 500 9 HIS A 301 77.71 -105.44 REMARK 500 9 VAL A 302 -145.76 -82.68 REMARK 500 9 GLU B 18 -145.39 -103.65 REMARK 500 9 PRO B 21 29.79 -69.38 REMARK 500 9 ASP B 42 -78.84 -94.07 REMARK 500 10 GLU A 152 -43.18 -162.61 REMARK 500 10 ASP A 176 -71.71 -50.60 REMARK 500 10 HIS A 205 36.26 -97.76 REMARK 500 10 ASP A 217 32.74 -79.43 REMARK 500 10 LYS A 219 -39.24 -161.30 REMARK 500 10 LYS A 283 40.74 -88.99 REMARK 500 10 GLN A 290 30.05 -96.94 REMARK 500 10 PRO B 21 27.50 -70.59 REMARK 500 11 GLU A 152 -20.81 -140.15 REMARK 500 11 HIS A 205 32.14 -95.18 REMARK 500 11 ASP A 217 36.07 -75.03 REMARK 500 11 LYS A 219 -50.88 -162.10 REMARK 500 11 GLU B 18 -74.30 -79.22 REMARK 500 11 PRO B 21 22.87 -70.63 REMARK 500 12 SER A 151 -62.58 -178.17 REMARK 500 12 SER A 177 121.00 -175.33 REMARK 500 12 ASP A 217 34.57 -81.82 REMARK 500 12 LYS A 219 -9.81 -158.61 REMARK 500 12 GLN A 264 37.72 -83.73 REMARK 500 12 HIS A 301 39.86 -99.91 REMARK 500 12 GLN A 303 -84.43 -103.48 REMARK 500 12 GLU B 18 -66.81 -139.99 REMARK 500 12 PRO B 21 31.66 -68.80 REMARK 500 13 GLU A 152 -34.37 -164.39 REMARK 500 13 ASP A 176 -135.33 -90.54 REMARK 500 13 LYS A 219 -30.99 -149.04 REMARK 500 13 GLN A 264 35.19 -92.24 REMARK 500 13 LYS A 283 30.10 -141.26 REMARK 500 13 PHE A 300 30.92 -87.15 REMARK 500 13 PRO B 21 38.41 -72.50 REMARK 500 14 SER A 151 -43.53 -167.09 REMARK 500 14 GLU A 152 -26.96 -158.81 REMARK 500 14 ASP A 176 49.74 -91.36 REMARK 500 14 PRO A 179 99.18 -61.84 REMARK 500 14 ILE A 218 108.38 -57.15 REMARK 500 14 LYS A 219 -82.60 -145.83 REMARK 500 14 GLN A 264 36.64 -99.29 REMARK 500 14 LYS A 283 34.11 -141.22 REMARK 500 14 PHE A 300 30.18 -85.08 REMARK 500 14 ASP A 304 -79.26 -124.64 REMARK 500 14 GLU B 18 -77.68 -143.53 REMARK 500 14 PRO B 21 40.40 -71.15 REMARK 500 15 HIS A 205 36.25 -97.27 REMARK 500 15 ASP A 217 33.25 -93.94 REMARK 500 15 LYS A 219 17.51 -161.61 REMARK 500 15 HIS A 301 134.12 -170.17 REMARK 500 15 VAL A 302 -63.91 -100.32 REMARK 500 15 GLN A 303 -157.71 -138.06 REMARK 500 15 PRO B 21 0.49 -59.49 REMARK 500 16 SER A 151 28.58 -174.63 REMARK 500 16 GLU A 152 -50.83 -140.41 REMARK 500 16 GLN A 264 38.40 -98.22 REMARK 500 16 GLN A 303 -151.23 -160.04 REMARK 500 16 PRO B 21 -1.77 -58.34 REMARK 500 16 SER B 39 32.53 -89.66 REMARK 500 17 SER A 151 -48.84 -138.19 REMARK 500 17 SER A 174 -92.67 -151.07 REMARK 500 17 ALA A 183 56.68 -105.87 REMARK 500 17 HIS A 205 35.86 -92.18 REMARK 500 17 ASP A 217 33.06 -82.73 REMARK 500 17 LYS A 219 -15.32 -142.63 REMARK 500 17 PRO B 21 3.36 -61.14 REMARK 500 17 ASP B 42 -152.06 -145.05 REMARK 500 18 SER A 174 -138.09 -164.44 REMARK 500 18 ALA A 183 81.03 -69.54 REMARK 500 18 ASP A 217 33.03 -81.71 REMARK 500 18 LYS A 219 -19.31 -144.59 REMARK 500 18 LYS A 283 41.85 -88.54 REMARK 500 18 HIS A 301 -59.55 -161.25 REMARK 500 18 ASP A 304 34.45 -97.64 REMARK 500 19 GLU A 152 70.01 4.61 REMARK 500 19 SER A 174 -159.48 -100.09 REMARK 500 19 PRO A 179 -177.83 -66.83 REMARK 500 19 ALA A 183 68.76 -109.76 REMARK 500 19 LYS A 219 -16.15 -154.98 REMARK 500 19 GLN A 264 39.11 -91.36 REMARK 500 19 PHE A 300 31.13 -80.43 REMARK 500 19 HIS A 301 -46.71 -139.65 REMARK 500 19 GLU B 18 -78.37 -109.59 REMARK 500 19 PRO B 21 37.23 -72.50 REMARK 500 20 SER A 177 78.91 -103.98 REMARK 500 20 PRO A 179 40.88 -95.53 REMARK 500 20 ILE A 218 107.63 -59.30 REMARK 500 20 LYS A 219 -28.68 -150.31 REMARK 500 20 LYS A 283 40.27 -99.46 REMARK 500 20 GLN A 303 -78.05 179.71 REMARK 500 20 GLU B 18 -166.40 -113.10 REMARK 500 20 PRO B 21 42.46 -64.16 REMARK 500 20 ASP B 42 30.76 -99.61 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WSX RELATED DB: PDB REMARK 900 UNLIGANDED MCL-1 REMARK 900 RELATED ID: 2JM6 RELATED DB: PDB REMARK 900 MCL-1:NOXAB COMPLEX REMARK 900 RELATED ID: 2ROC RELATED DB: PDB REMARK 900 MCL-1:PUMA COMPLEX
DBREF 2ROD A 152 308 UNP P97287 MCL1_MOUSE 152 308 DBREF 2ROD B 17 42 UNP Q9JM54 Q9JM54_MOUSE 17 42
SEQADV 2ROD GLY A 147 UNP P97287 EXPRESSION TAG SEQADV 2ROD PRO A 148 UNP P97287 EXPRESSION TAG SEQADV 2ROD LEU A 149 UNP P97287 EXPRESSION TAG SEQADV 2ROD GLY A 150 UNP P97287 EXPRESSION TAG SEQADV 2ROD SER A 151 UNP P97287 EXPRESSION TAG SEQADV 2ROD MET B 43 UNP Q9JM54 EXPRESSION TAG
SEQRES 1 A 162 GLY PRO LEU GLY SER GLU ASP ASP LEU TYR ARG GLN SER SEQRES 2 A 162 LEU GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR SEQRES 3 A 162 GLY SER LYS ASP SER LYS PRO LEU GLY GLU ALA GLY ALA SEQRES 4 A 162 ALA GLY ARG ARG ALA LEU GLU THR LEU ARG ARG VAL GLY SEQRES 5 A 162 ASP GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY SEQRES 6 A 162 MET LEU ARG LYS LEU ASP ILE LYS ASN GLU GLY ASP VAL SEQRES 7 A 162 LYS SER PHE SER ARG VAL MET VAL HIS VAL PHE LYS ASP SEQRES 8 A 162 GLY VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER SEQRES 9 A 162 PHE GLY ALA PHE VAL ALA LYS HIS LEU LYS SER VAL ASN SEQRES 10 A 162 GLN GLU SER PHE ILE GLU PRO LEU ALA GLU THR ILE THR SEQRES 11 A 162 ASP VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS SEQRES 12 A 162 GLN ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL SEQRES 13 A 162 GLN ASP LEU GLU GLY GLY SEQRES 1 B 27 ALA GLU LEU PRO PRO GLU PHE ALA ALA GLN LEU ARG LYS SEQRES 2 B 27 ILE GLY ASP LYS VAL TYR CYS THR TRP SER ALA PRO ASP SEQRES 3 B 27 MET
HELIX 1 1 GLU A 152 THR A 172 1 21 HELIX 2 2 GLY A 184 HIS A 205 1 22 HELIX 3 3 HIS A 205 LEU A 216 1 12 HELIX 4 4 ASN A 220 GLY A 222 5 3 HELIX 5 5 ASP A 223 VAL A 234 1 12 HELIX 6 6 ASN A 241 VAL A 262 1 22 HELIX 7 7 GLN A 264 THR A 282 1 19 HELIX 8 8 LYS A 283 GLN A 290 1 8 HELIX 9 9 GLY A 292 PHE A 300 1 9 HELIX 10 10 PRO B 21 ALA B 40 1 20
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000