10 20 30 40 50 60 70 80 2ROC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER APOPTOSIS 17-MAR-08 2ROC
TITLE SOLUTION STRUCTURE OF MCL-1 COMPLEXED WITH PUMA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION COMPND 3 PROTEIN MCL-1 HOMOLOG; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 152-308; COMPND 6 SYNONYM: BCL-2-RELATED PROTEIN EAT/MCL1, MCL-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BCL-2-BINDING COMPONENT 3; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: BH3 DOMAIN, RESIDUES 130-155; COMPND 12 SYNONYM: P53 UP-REGULATED MODULATOR OF APOPTOSIS, PUMA; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 GENE: MCL-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX6P-3; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 GENE: PUMA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET-31B
KEYWDS MCL-1, BCL-2, APOPTOSIS, PUMA, BH3-ONLY, CYTOPLASM, KEYWDS 2 DEVELOPMENTAL PROTEIN, DIFFERENTIATION, MEMBRANE, KEYWDS 3 MITOCHONDRION, NUCLEUS, PHOSPHOPROTEIN, TRANSMEMBRANE, UBL KEYWDS 4 CONJUGATION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.L.DAY,C.SMITS,F.C.FAN,E.F.LEE,W.D.FAIRLIE,M.G.HINDS
REVDAT 2 24-FEB-09 2ROC 1 VERSN REVDAT 1 08-JUL-08 2ROC 0
JRNL AUTH C.L.DAY,C.SMITS,F.C.FAN,E.F.LEE,W.D.FAIRLIE, JRNL AUTH 2 M.G.HINDS JRNL TITL STRUCTURE OF THE BH3 DOMAINS FROM THE JRNL TITL 2 P53-INDUCIBLE BH3-ONLY PROTEINS NOXA AND PUMA IN JRNL TITL 3 COMPLEX WITH MCL-1 JRNL REF J.MOL.BIOL. V. 380 958 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18589438 JRNL DOI 10.1016/J.JMB.2008.05.071
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE CALCULATED ON THE REMARK 3 BASIS OF 3667 TOTAL CONSTRAINTS. 2943 OF THESE CONSTRAINTS REMARK 3 WERE NOE-DERIVED DISTANCES OF WHICH 197 WERE INTERMOLECULAR REMARK 3 NOES; 348 DIHEDRAL ANGLE RESTRAINTS AND 188 HYDROGEN BONDS
REMARK 4 REMARK 4 2ROC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAR-08. REMARK 100 THE RCSB ID CODE IS RCSB150090.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 120 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM [U-100% 13C; U-100% REMARK 210 15N] MCL-1; 0.5MM PUMA; 95% REMARK 210 H2O/5% D2O; 0.5MM MCL-1; 0.5MM REMARK 210 [U-100% 13C; U-100% 15N] PUMA; REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY, 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, XEASY 1.3, CYANA REMARK 210 2.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 256 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STANDARD HETERONUCLEAR METHODS WERE USED TO ASSIGN REMARK 210 RESONANCES AND DETERMINE THE CONSTRAINTS
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 148 -153.85 -83.54 REMARK 500 1 LEU A 180 32.42 -72.67 REMARK 500 1 GLN A 264 45.61 -101.86 REMARK 500 1 GLU A 306 -67.33 65.90 REMARK 500 2 ASP A 176 90.78 -61.16 REMARK 500 2 LEU A 180 34.50 -78.95 REMARK 500 2 ARG B 154 23.12 -77.78 REMARK 500 3 PRO A 148 -101.48 -80.65 REMARK 500 3 PRO A 179 99.92 -24.90 REMARK 500 3 LEU A 180 31.21 -87.72 REMARK 500 3 LYS A 283 56.20 -145.31 REMARK 500 3 VAL A 302 95.17 -61.79 REMARK 500 4 LEU A 180 34.69 -88.75 REMARK 500 4 GLN A 264 50.73 -113.89 REMARK 500 4 ARG A 291 -42.67 72.19 REMARK 500 5 LEU A 180 35.32 -72.22 REMARK 500 5 ALA A 183 -63.62 -92.69 REMARK 500 5 HIS A 205 53.36 -113.03 REMARK 500 5 GLN A 264 43.44 -106.03 REMARK 500 5 VAL A 302 41.20 -81.73 REMARK 500 5 GLN A 303 29.37 -140.76 REMARK 500 5 LEU A 305 36.28 -75.77 REMARK 500 5 ARG B 154 33.73 -87.86 REMARK 500 6 ASP A 176 94.17 -65.02 REMARK 500 6 LEU A 180 34.53 -76.33 REMARK 500 6 HIS A 205 46.83 -105.51 REMARK 500 6 LEU A 216 59.35 -92.98 REMARK 500 6 GLN A 264 49.32 -90.73 REMARK 500 6 HIS A 301 75.16 -109.68 REMARK 500 6 GLU B 131 48.84 -83.27 REMARK 500 7 ASP A 176 109.92 -51.48 REMARK 500 7 PRO A 179 103.54 -38.85 REMARK 500 7 LEU A 180 32.97 -85.51 REMARK 500 7 HIS A 205 53.84 -116.94 REMARK 500 7 GLN A 264 47.31 -104.64 REMARK 500 7 LYS A 283 54.25 -148.63 REMARK 500 7 HIS A 301 163.77 73.55 REMARK 500 7 ASP A 304 -79.27 -55.48 REMARK 500 8 GLN A 264 50.61 -102.12 REMARK 500 8 LYS A 283 61.64 -150.94 REMARK 500 8 ARG A 291 147.44 69.82 REMARK 500 8 GLN A 303 91.74 69.84 REMARK 500 8 GLU A 306 49.37 -76.66 REMARK 500 9 ASP A 176 89.50 -163.48 REMARK 500 9 LEU A 180 29.13 -73.17 REMARK 500 9 HIS A 205 42.51 -100.66 REMARK 500 9 LEU A 216 57.43 -95.46 REMARK 500 9 GLN A 264 48.05 -106.28 REMARK 500 9 LEU A 305 -79.34 -109.06 REMARK 500 9 GLU A 306 -59.30 71.37 REMARK 500 10 LEU A 149 26.73 -77.21 REMARK 500 10 LEU A 180 32.69 -88.95 REMARK 500 10 HIS A 205 44.09 -103.18 REMARK 500 10 LEU A 216 58.47 -113.15 REMARK 500 10 GLN A 264 46.67 -96.57 REMARK 500 10 ARG A 291 18.21 59.83 REMARK 500 10 HIS A 301 76.10 -102.88 REMARK 500 11 LEU A 180 34.93 -87.49 REMARK 500 11 HIS A 301 90.55 -61.35 REMARK 500 12 PRO A 148 93.50 -68.80 REMARK 500 12 LEU A 180 34.62 -75.09 REMARK 500 12 GLN A 264 52.30 -113.18 REMARK 500 12 LYS A 283 50.33 -151.08 REMARK 500 12 ASP A 304 -135.44 -151.07 REMARK 500 12 GLU A 306 -86.04 57.47 REMARK 500 12 ARG B 154 33.20 -90.92 REMARK 500 13 PRO A 179 101.43 -54.83 REMARK 500 13 LEU A 180 34.50 -71.59 REMARK 500 13 THR A 240 46.92 -80.41 REMARK 500 13 GLN A 264 51.50 -115.01 REMARK 500 13 LYS A 283 48.51 -149.41 REMARK 500 13 GLU B 131 58.27 -109.71 REMARK 500 14 ASP A 176 105.23 -171.88 REMARK 500 14 SER A 177 72.57 -154.11 REMARK 500 14 LYS A 178 135.37 -170.34 REMARK 500 14 LEU A 180 32.48 -78.21 REMARK 500 14 LEU A 216 58.71 -93.55 REMARK 500 14 LYS A 283 56.58 -148.95 REMARK 500 14 ARG A 291 148.82 70.07 REMARK 500 15 ASP A 153 98.66 -67.68 REMARK 500 15 LEU A 180 33.28 -79.65 REMARK 500 15 HIS A 205 54.40 -110.04 REMARK 500 15 LEU A 216 58.50 -118.28 REMARK 500 15 GLN A 264 49.61 -102.81 REMARK 500 15 GLN A 303 114.79 67.13 REMARK 500 15 GLU A 306 -58.70 68.91 REMARK 500 16 PRO A 148 -153.76 -84.37 REMARK 500 16 LEU A 180 34.34 -73.26 REMARK 500 16 HIS A 205 42.06 -104.70 REMARK 500 16 LEU A 216 58.52 -99.00 REMARK 500 16 GLN A 264 51.12 -108.50 REMARK 500 16 VAL A 302 -117.86 -99.11 REMARK 500 17 ASP A 176 90.40 -69.50 REMARK 500 17 LEU A 180 34.42 -87.05 REMARK 500 17 HIS A 205 53.78 -107.75 REMARK 500 17 GLN A 264 50.67 -93.56 REMARK 500 17 LYS A 283 56.19 -144.27 REMARK 500 17 ARG A 291 -60.63 77.89 REMARK 500 18 PRO A 179 109.81 -41.97 REMARK 500 18 LEU A 180 33.76 -78.85 REMARK 500 18 LYS A 283 71.82 -150.41 REMARK 500 18 HIS A 301 115.19 -160.04 REMARK 500 19 LEU A 180 33.08 -86.92 REMARK 500 19 LEU A 216 59.12 -91.60 REMARK 500 19 GLN A 264 45.03 -96.16 REMARK 500 19 LYS A 283 50.39 -150.20 REMARK 500 20 ASP A 176 115.48 -37.94 REMARK 500 20 LEU A 180 33.63 -79.17 REMARK 500 20 HIS A 205 53.74 -111.92 REMARK 500 20 LEU A 216 58.19 -98.49 REMARK 500 20 GLN A 264 50.30 -95.75 REMARK 500 20 HIS A 301 -53.03 -126.97 REMARK 500 20 ASP A 304 -79.38 -63.47 REMARK 500 20 GLU A 306 -179.04 67.33 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WSX RELATED DB: PDB REMARK 900 UNLIGANDED MCL-1 REMARK 900 RELATED ID: 2JM6 RELATED DB: PDB REMARK 900 MCL-1:NOXAB COMPLEX REMARK 900 RELATED ID: 2ROD RELATED DB: PDB REMARK 900 MCL-1:NOXAA COMPLEX
DBREF 2ROC A 152 308 UNP P97287 MCL1_MOUSE 152 308 DBREF 2ROC B 130 155 UNP Q99ML1 BBC3_MOUSE 130 155
SEQADV 2ROC GLY A 147 UNP P97287 EXPRESSION TAG SEQADV 2ROC PRO A 148 UNP P97287 EXPRESSION TAG SEQADV 2ROC LEU A 149 UNP P97287 EXPRESSION TAG SEQADV 2ROC GLY A 150 UNP P97287 EXPRESSION TAG SEQADV 2ROC SER A 151 UNP P97287 EXPRESSION TAG SEQADV 2ROC ILE B 144 UNP Q99ML1 MET 144 ENGINEERED SEQADV 2ROC MET B 156 UNP Q99ML1 EXPRESSION TAG
SEQRES 1 A 162 GLY PRO LEU GLY SER GLU ASP ASP LEU TYR ARG GLN SER SEQRES 2 A 162 LEU GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR SEQRES 3 A 162 GLY SER LYS ASP SER LYS PRO LEU GLY GLU ALA GLY ALA SEQRES 4 A 162 ALA GLY ARG ARG ALA LEU GLU THR LEU ARG ARG VAL GLY SEQRES 5 A 162 ASP GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY SEQRES 6 A 162 MET LEU ARG LYS LEU ASP ILE LYS ASN GLU GLY ASP VAL SEQRES 7 A 162 LYS SER PHE SER ARG VAL MET VAL HIS VAL PHE LYS ASP SEQRES 8 A 162 GLY VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER SEQRES 9 A 162 PHE GLY ALA PHE VAL ALA LYS HIS LEU LYS SER VAL ASN SEQRES 10 A 162 GLN GLU SER PHE ILE GLU PRO LEU ALA GLU THR ILE THR SEQRES 11 A 162 ASP VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS SEQRES 12 A 162 GLN ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL SEQRES 13 A 162 GLN ASP LEU GLU GLY GLY SEQRES 1 B 27 GLU GLU GLU TRP ALA ARG GLU ILE GLY ALA GLN LEU ARG SEQRES 2 B 27 ARG ILE ALA ASP ASP LEU ASN ALA GLN TYR GLU ARG ARG SEQRES 3 B 27 MET
HELIX 1 1 PRO A 148 GLU A 152 5 5 HELIX 2 2 ASP A 153 GLY A 173 1 21 HELIX 3 3 GLY A 184 HIS A 205 1 22 HELIX 4 4 HIS A 205 LEU A 216 1 12 HELIX 5 5 GLU A 221 PHE A 235 1 15 HELIX 6 6 LYS A 236 GLY A 238 5 3 HELIX 7 7 ASN A 241 VAL A 262 1 22 HELIX 8 8 GLN A 264 LYS A 283 1 20 HELIX 9 9 LYS A 283 GLN A 290 1 8 HELIX 10 10 GLY A 292 HIS A 301 1 10 HELIX 11 11 GLU B 131 ARG B 154 1 24
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000