10 20 30 40 50 60 70 80 2RNE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 19-DEC-07 2RNE
TITLE SOLUTION STRUCTURE OF THE SECOND RNA RECOGNITION MOTIF TITLE 2 (RRM) OF TIA-1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TIA1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TIA1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: P050425-20; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.TAKAHASHI,K.KUWASAKO,C.ABE,K.TSUDA,M.INOUE,T.TERADA, AUTHOR 2 M.SHIROUZU,N.KOBAYASHI,T.KIGAWA,S.TAGUCHI,P.GUNTERT, AUTHOR 3 Y.HAYASHIZAKI,A.TANAKA,Y.MUTO,S.YOKOYAMA
REVDAT 2 24-FEB-09 2RNE 1 VERSN REVDAT 1 04-NOV-08 2RNE 0
JRNL AUTH K.KUWASAKO,M.TAKAHASHI,N.TOCHIO,C.ABE,K.TSUDA, JRNL AUTH 2 M.INOUE,T.TERADA,M.SHIROUZU,N.KOBAYASHI,T.KIGAWA, JRNL AUTH 3 S.TAGUCHI,A.TANAKA,Y.HAYASHIZAKI,P.GUNTERT,Y.MUTO, JRNL AUTH 4 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND RNA RECOGNITION JRNL TITL 2 MOTIF (RRM) DOMAIN OF MURINE T CELL INTRACELLULAR JRNL TITL 3 ANTIGEN-1 (TIA-1) AND ITS RNA RECOGNITION MODE JRNL REF BIOCHEMISTRY V. 47 6437 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18500819 JRNL DOI 10.1021/BI7024723
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL REMARK 3 AUTHORS : JONES,ZOU,COWAN,KJELDGAARD REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2RNE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB150062.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM [U-99% 2H] TRIS, 100MM REMARK 210 SODIUM CHLORIDE, 1MM [U-98% REMARK 210 2H] DTT, 0.02% SODIUM AZIDE, REMARK 210 1MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : OPAL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 PHE A 100 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 124 -61.07 -130.28 REMARK 500 1 THR A 188 56.46 -69.76 REMARK 500 1 SER A 191 -80.81 -137.31 REMARK 500 2 SER A 87 1.32 -54.04 REMARK 500 2 GLN A 89 91.68 -52.16 REMARK 500 2 THR A 93 19.37 48.80 REMARK 500 2 PRO A 106 -5.33 -59.95 REMARK 500 2 SER A 124 -73.93 -112.53 REMARK 500 2 GLN A 156 -70.87 -69.40 REMARK 500 2 THR A 183 173.56 160.56 REMARK 500 2 SER A 186 71.81 -154.39 REMARK 500 2 LYS A 189 20.73 49.78 REMARK 500 3 LYS A 91 2.34 59.92 REMARK 500 3 ASP A 103 -1.69 70.41 REMARK 500 3 SER A 124 -72.65 -116.06 REMARK 500 3 THR A 134 -25.17 -141.93 REMARK 500 3 ARG A 175 -166.99 -160.93 REMARK 500 3 GLU A 185 140.74 -171.25 REMARK 500 3 SER A 186 27.90 -164.51 REMARK 500 3 SER A 191 141.18 160.71 REMARK 500 4 SER A 86 107.96 -54.14 REMARK 500 4 THR A 93 2.44 55.08 REMARK 500 4 SER A 94 -6.14 -53.80 REMARK 500 4 ASN A 95 21.41 -142.40 REMARK 500 4 SER A 124 -71.44 -99.80 REMARK 500 4 THR A 134 -16.15 -140.24 REMARK 500 4 SER A 186 93.20 -161.36 REMARK 500 5 SER A 124 -69.45 -123.84 REMARK 500 5 GLN A 156 -71.09 -68.69 REMARK 500 5 SER A 191 110.84 -161.41 REMARK 500 6 LYS A 91 54.45 -99.58 REMARK 500 6 SER A 124 -74.89 -99.86 REMARK 500 7 SER A 87 15.98 -58.14 REMARK 500 7 LYS A 91 143.05 -171.00 REMARK 500 7 ASP A 92 36.57 38.58 REMARK 500 7 THR A 93 14.02 55.21 REMARK 500 7 SER A 124 -73.26 -111.41 REMARK 500 7 SER A 186 87.72 -69.60 REMARK 500 7 LYS A 189 118.54 -166.30 REMARK 500 8 SER A 83 19.86 51.17 REMARK 500 8 SER A 182 -166.06 -129.19 REMARK 500 8 THR A 183 -151.77 -116.69 REMARK 500 9 PRO A 106 -8.30 -59.98 REMARK 500 9 LYS A 189 129.56 -177.31 REMARK 500 10 SER A 83 93.89 -35.50 REMARK 500 10 LYS A 90 -68.84 -134.36 REMARK 500 10 SER A 94 0.32 -52.55 REMARK 500 10 ASN A 95 -3.14 -148.65 REMARK 500 10 SER A 186 28.47 -159.60 REMARK 500 10 THR A 188 118.47 -25.89 REMARK 500 11 SER A 86 -65.72 -148.65 REMARK 500 11 SER A 87 66.43 30.70 REMARK 500 11 ASP A 92 27.40 -75.05 REMARK 500 11 THR A 93 46.21 -69.15 REMARK 500 11 ASN A 95 -12.37 61.75 REMARK 500 11 SER A 124 -72.93 -100.47 REMARK 500 11 SER A 182 105.18 -172.47 REMARK 500 11 GLU A 185 103.24 -163.29 REMARK 500 11 SER A 186 146.69 -175.88 REMARK 500 11 LYS A 189 -58.02 -144.67 REMARK 500 12 SER A 124 -79.02 -99.29 REMARK 500 12 TYR A 184 -66.80 -92.28 REMARK 500 12 SER A 186 88.20 -157.63 REMARK 500 13 SER A 87 -52.36 58.25 REMARK 500 13 ASN A 95 13.45 59.75 REMARK 500 13 ARG A 175 81.37 -156.14 REMARK 500 13 SER A 186 84.97 -159.30 REMARK 500 13 LYS A 189 82.09 -156.96 REMARK 500 14 SER A 84 166.59 170.96 REMARK 500 14 SER A 124 -81.42 -100.54 REMARK 500 14 SER A 137 109.66 -56.15 REMARK 500 14 SER A 182 112.80 -163.58 REMARK 500 14 GLU A 185 148.61 -174.51 REMARK 500 14 SER A 186 12.11 -162.05 REMARK 500 14 SER A 194 -12.80 71.69 REMARK 500 15 SER A 83 18.87 51.77 REMARK 500 15 SER A 124 -73.03 -99.80 REMARK 500 15 TYR A 184 16.55 -149.34 REMARK 500 15 ASN A 187 31.86 -158.70 REMARK 500 15 THR A 188 83.83 -61.08 REMARK 500 15 SER A 191 -178.27 -171.89 REMARK 500 15 SER A 194 -6.72 64.08 REMARK 500 16 THR A 93 38.39 -68.46 REMARK 500 16 SER A 124 -65.33 -125.73 REMARK 500 16 THR A 188 110.18 -160.93 REMARK 500 16 SER A 191 -174.35 176.34 REMARK 500 17 THR A 93 -1.28 -58.09 REMARK 500 17 SER A 124 -66.21 -100.18 REMARK 500 17 THR A 134 -34.08 -141.93 REMARK 500 17 GLN A 156 -70.99 -84.77 REMARK 500 17 THR A 174 -15.81 62.14 REMARK 500 17 SER A 191 111.24 -172.15 REMARK 500 18 SER A 83 79.34 -68.48 REMARK 500 18 LYS A 91 -77.85 -75.88 REMARK 500 18 SER A 94 -37.68 -144.89 REMARK 500 18 ASN A 95 15.86 -141.25 REMARK 500 18 SER A 124 -69.32 -123.97 REMARK 500 18 SER A 182 -60.44 -134.23 REMARK 500 18 THR A 188 46.98 -73.20 REMARK 500 19 SER A 94 -2.32 -53.54 REMARK 500 19 ASN A 95 16.16 -150.84 REMARK 500 19 SER A 124 -69.24 -126.93 REMARK 500 19 SER A 195 11.36 -141.87 REMARK 500 20 SER A 86 97.34 -50.13 REMARK 500 20 SER A 87 13.93 58.16 REMARK 500 20 THR A 93 99.57 -63.39 REMARK 500 20 ASN A 95 -7.66 -143.00 REMARK 500 20 SER A 124 -62.61 -134.95 REMARK 500 20 SER A 195 -22.24 -144.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 169 0.09 SIDE_CHAIN REMARK 500 2 ARG A 175 0.09 SIDE_CHAIN REMARK 500 5 TYR A 140 0.09 SIDE_CHAIN REMARK 500 6 ARG A 166 0.10 SIDE_CHAIN REMARK 500 7 ARG A 169 0.12 SIDE_CHAIN REMARK 500 8 TYR A 140 0.06 SIDE_CHAIN REMARK 500 9 TYR A 140 0.08 SIDE_CHAIN REMARK 500 11 ARG A 166 0.10 SIDE_CHAIN REMARK 500 12 ARG A 166 0.08 SIDE_CHAIN REMARK 500 16 TYR A 140 0.08 SIDE_CHAIN REMARK 500 16 ARG A 175 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 2RNE A 89 190 UNP Q80ZW7 Q80ZW7_MOUSE 89 190
SEQADV 2RNE GLY A 82 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE SER A 83 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE SER A 84 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE GLY A 85 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE SER A 86 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE SER A 87 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE GLY A 88 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE SER A 191 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE GLY A 192 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE PRO A 193 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE SER A 194 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE SER A 195 UNP Q80ZW7 EXPRESSION TAG SEQADV 2RNE GLY A 196 UNP Q80ZW7 EXPRESSION TAG
SEQRES 1 A 115 GLY SER SER GLY SER SER GLY GLN LYS LYS ASP THR SER SEQRES 2 A 115 ASN HIS PHE HIS VAL PHE VAL GLY ASP LEU SER PRO GLU SEQRES 3 A 115 ILE THR THR GLU ASP ILE LYS ALA ALA PHE ALA PRO PHE SEQRES 4 A 115 GLY ARG ILE SER ASP ALA ARG VAL VAL LYS ASP MET ALA SEQRES 5 A 115 THR GLY LYS SER LYS GLY TYR GLY PHE VAL SER PHE PHE SEQRES 6 A 115 ASN LYS TRP ASP ALA GLU ASN ALA ILE GLN GLN MET GLY SEQRES 7 A 115 GLY GLN TRP LEU GLY GLY ARG GLN ILE ARG THR ASN TRP SEQRES 8 A 115 ALA THR ARG LYS PRO PRO ALA PRO LYS SER THR TYR GLU SEQRES 9 A 115 SER ASN THR LYS GLN SER GLY PRO SER SER GLY
HELIX 1 1 THR A 109 ALA A 118 1 10 HELIX 2 2 PRO A 119 GLY A 121 5 3 HELIX 3 3 ASN A 147 GLY A 159 1 13
SHEET 1 A 4 ILE A 123 LYS A 130 0 SHEET 2 A 4 SER A 137 PHE A 145 -1 O LYS A 138 N VAL A 129 SHEET 3 A 4 PHE A 97 GLY A 102 -1 N VAL A 99 O VAL A 143 SHEET 4 A 4 ARG A 169 TRP A 172 -1 O ASN A 171 N PHE A 100 SHEET 1 B 2 TRP A 162 LEU A 163 0 SHEET 2 B 2 ARG A 166 GLN A 167 -1 O ARG A 166 N LEU A 163
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000