10 20 30 40 50 60 70 80 2RD7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 21-SEP-07 2RD7
TITLE HUMAN COMPLEMENT MEMBRANE ATTACK PROTEINS SHARE A COMMON TITLE 2 FOLD WITH BACTERIAL CYTOLYSINS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT COMPONENT C8 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COMPLEMENT COMPONENT 8 SUBUNIT ALPHA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COMPLEMENT COMPONENT C8 GAMMA CHAIN; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: COMPLEMENT COMPONENT 8 SUBUNIT GAMMA; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: C8A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 GENE: C8G; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI
KEYWDS MEMBRANE ATTACK SYSTEM, CLEAVAGE ON PAIR OF BASIC RESIDUES, KEYWDS 2 COMPLEMENT ALTERNATE PATHWAY, COMPLEMENT PATHWAY, CYTOLYSIS, KEYWDS 3 EGF-LIKE DOMAIN, GLYCOPROTEIN, IMMUNE RESPONSE, INNATE KEYWDS 4 IMMUNITY, MEMBRANE ATTACK COMPLEX, POLYMORPHISM, SECRETED, KEYWDS 5 IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR D.J.SLADE,L.L.LOVELACE,M.CHRUSZCZ,W.MINOR,L.LEBIODA, AUTHOR 2 J.M.SODETZ
REVDAT 2 24-FEB-09 2RD7 1 VERSN REVDAT 1 27-MAY-08 2RD7 0
JRNL AUTH D.J.SLADE,L.L.LOVELACE,M.CHRUSZCZ,W.MINOR, JRNL AUTH 2 L.LEBIODA,J.M.SODETZ JRNL TITL CRYSTAL STRUCTURE OF THE MACPF DOMAIN OF HUMAN JRNL TITL 2 COMPLEMENT PROTEIN C8ALPHA IN COMPLEX WITH THE JRNL TITL 3 C8GAMA SUBUNIT JRNL REF J.MOL.BIOL. V. 379 331 2008 JRNL REFN ISSN 0022-2836 JRNL DOI DOI:10.1016/J.PHYSLETB.2003.10.071
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005, COOT REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 30735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1616 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1850 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3844 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -1.59000 REMARK 3 B33 (A**2) : 1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3933 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3469 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5328 ; 1.630 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8014 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 7.395 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;34.382 ;23.716 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;16.557 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.409 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4465 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 857 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 782 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3487 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1924 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2329 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 190 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.256 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.081 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2485 ; 1.022 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1022 ; 0.227 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3898 ; 1.705 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1643 ; 2.323 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1430 ; 3.613 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2RD7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB044718.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9565 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32462 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : 0.31500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELXD, SHELXE, ARP/WARP, REMARK 200 RESOLVE, O, CCP4, MOLREP REMARK 200 STARTING MODEL: LOWER RESOLUTION MODEL SOLVED BY SAD REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG 20,000, 0.1 M CITRIC ACID, REMARK 280 0.025 M MG(NO3)2, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.27650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.04350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.27650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.04350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 MET A 102 REMARK 465 VAL A 103 REMARK 465 ARG A 104 REMARK 465 ALA A 105 REMARK 465 ILE A 106 REMARK 465 ASP A 107 REMARK 465 GLU A 108 REMARK 465 GLY A 225 REMARK 465 PRO A 226 REMARK 465 ALA A 227 REMARK 465 GLU A 355 REMARK 465 ASP A 356 REMARK 465 LYS A 357 REMARK 465 ILE A 358 REMARK 465 ASN A 359 REMARK 465 VAL A 360 REMARK 465 GLY A 361 REMARK 465 GLY A 362 REMARK 465 GLY A 363 REMARK 465 LEU A 364 REMARK 465 SER A 365 REMARK 465 GLY A 366 REMARK 465 SER A 398 REMARK 465 GLY A 399 REMARK 465 TRP A 400 REMARK 465 SER A 401 REMARK 465 GLY A 402 REMARK 465 GLY A 403 REMARK 465 LEU A 404 REMARK 465 ALA A 405 REMARK 465 GLN A 406 REMARK 465 ASN A 407 REMARK 465 ARG A 408 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 GLN C 1 REMARK 465 LYS C 2 REMARK 465 PRO C 3 REMARK 465 GLN C 4 REMARK 465 ARG C 5 REMARK 465 PRO C 6 REMARK 465 ARG C 7 REMARK 465 ARG C 8 REMARK 465 PRO C 9 REMARK 465 ALA C 10 REMARK 465 SER C 11 REMARK 465 PRO C 12 REMARK 465 ILE C 13 REMARK 465 SER C 14 REMARK 465 GLN C 46 REMARK 465 GLY C 47 REMARK 465 HIS C 48 REMARK 465 ALA C 63 REMARK 465 GLY C 84 REMARK 465 ALA C 96 REMARK 465 GLN C 125 REMARK 465 ARG C 181 REMARK 465 ARG C 182
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 GLN A 112 CG CD OE1 NE2 REMARK 470 GLU A 148 CD OE1 OE2 REMARK 470 ARG A 159 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 211 CE NZ REMARK 470 ASP A 216 CG OD1 OD2 REMARK 470 ILE A 224 CG1 CG2 CD1 REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 LYS A 272 CE NZ REMARK 470 LYS A 275 CD CE NZ REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 LYS A 331 CD CE NZ REMARK 470 GLN A 353 CG CD OE1 NE2 REMARK 470 ASP A 367 CG OD1 OD2 REMARK 470 LYS A 370 CG CD CE NZ REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 TYR A 422 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 41 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 42 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 44 CG CD OE1 NE2 REMARK 470 GLU C 45 CG CD OE1 OE2 REMARK 470 THR C 62 CB OG1 CG2 REMARK 470 ASP C 85 CG OD1 OD2 REMARK 470 ARG C 97 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 98 CB CG OD1 OD2 REMARK 470 ARG C 100 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 121 CG CD OE1 OE2 REMARK 470 ARG C 122 CD NE CZ NH1 NH2 REMARK 470 GLN C 147 CD OE1 NE2 REMARK 470 GLU C 156 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 168 CB CYS C 168 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 171 42.04 -79.07 REMARK 500 LEU A 446 57.94 -142.53 REMARK 500 ASN C 21 41.76 75.48 REMARK 500 SER C 38 140.35 -171.39 REMARK 500 VAL C 88 -167.27 -109.63 REMARK 500 LEU C 89 -69.08 -96.72 REMARK 500 ASP C 98 -159.64 68.66 REMARK 500 TYR C 112 -23.29 72.39 REMARK 500 SER C 114 -32.19 -147.20 REMARK 500 ARG C 122 -73.99 -71.87 REMARK 500 ALA C 123 108.98 -163.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 87 VAL C 88 147.12 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 183
DBREF 2RD7 A 103 462 UNP P07357 CO8A_HUMAN 133 492 DBREF 2RD7 C 1 182 UNP P07360 CO8G_HUMAN 21 202
SEQADV 2RD7 HIS A 96 UNP P07357 EXPRESSION TAG SEQADV 2RD7 HIS A 97 UNP P07357 EXPRESSION TAG SEQADV 2RD7 HIS A 98 UNP P07357 EXPRESSION TAG SEQADV 2RD7 HIS A 99 UNP P07357 EXPRESSION TAG SEQADV 2RD7 HIS A 100 UNP P07357 EXPRESSION TAG SEQADV 2RD7 HIS A 101 UNP P07357 EXPRESSION TAG SEQADV 2RD7 MET A 102 UNP P07357 EXPRESSION TAG SEQADV 2RD7 MET C -1 UNP P07360 EXPRESSION TAG SEQADV 2RD7 ALA C 0 UNP P07360 EXPRESSION TAG
SEQRES 1 A 367 HIS HIS HIS HIS HIS HIS MET VAL ARG ALA ILE ASP GLU SEQRES 2 A 367 ASP CYS SER GLN TYR GLU PRO ILE PRO GLY SER GLN LYS SEQRES 3 A 367 ALA ALA LEU GLY TYR ASN ILE LEU THR GLN GLU ASP ALA SEQRES 4 A 367 GLN SER VAL TYR ASP ALA SER TYR TYR GLY GLY GLN CYS SEQRES 5 A 367 GLU THR VAL TYR ASN GLY GLU TRP ARG GLU LEU ARG TYR SEQRES 6 A 367 ASP SER THR CYS GLU ARG LEU TYR TYR GLY ASP ASP GLU SEQRES 7 A 367 LYS TYR PHE ARG LYS PRO TYR ASN PHE LEU LYS TYR HIS SEQRES 8 A 367 PHE GLU ALA LEU ALA ASP THR GLY ILE SER SER GLU PHE SEQRES 9 A 367 TYR ASP ASN ALA ASN ASP LEU LEU SER LYS VAL LYS LYS SEQRES 10 A 367 ASP LYS SER ASP SER PHE GLY VAL THR ILE GLY ILE GLY SEQRES 11 A 367 PRO ALA GLY SER PRO LEU LEU VAL GLY VAL GLY VAL SER SEQRES 12 A 367 HIS SER GLN ASP THR SER PHE LEU ASN GLU LEU ASN LYS SEQRES 13 A 367 TYR ASN GLU LYS LYS PHE ILE PHE THR ARG ILE PHE THR SEQRES 14 A 367 LYS VAL GLN THR ALA HIS PHE LYS MET ARG LYS ASP ASP SEQRES 15 A 367 ILE MET LEU ASP GLU GLY MET LEU GLN SER LEU MET GLU SEQRES 16 A 367 LEU PRO ASP GLN TYR ASN TYR GLY MET TYR ALA LYS PHE SEQRES 17 A 367 ILE ASN ASP TYR GLY THR HIS TYR ILE THR SER GLY SER SEQRES 18 A 367 MET GLY GLY ILE TYR GLU TYR ILE LEU VAL ILE ASP LYS SEQRES 19 A 367 ALA LYS MET GLU SER LEU GLY ILE THR SER ARG ASP ILE SEQRES 20 A 367 THR THR CYS PHE GLY GLY SER LEU GLY ILE GLN TYR GLU SEQRES 21 A 367 ASP LYS ILE ASN VAL GLY GLY GLY LEU SER GLY ASP HIS SEQRES 22 A 367 CYS LYS LYS PHE GLY GLY GLY LYS THR GLU ARG ALA ARG SEQRES 23 A 367 LYS ALA MET ALA VAL GLU ASP ILE ILE SER ARG VAL ARG SEQRES 24 A 367 GLY GLY SER SER GLY TRP SER GLY GLY LEU ALA GLN ASN SEQRES 25 A 367 ARG SER THR ILE THR TYR ARG SER TRP GLY ARG SER LEU SEQRES 26 A 367 LYS TYR ASN PRO VAL VAL ILE ASP PHE GLU MET GLN PRO SEQRES 27 A 367 ILE HIS GLU VAL LEU ARG HIS THR SER LEU GLY PRO LEU SEQRES 28 A 367 GLU ALA LYS ARG GLN ASN LEU ARG ARG ALA LEU ASP GLN SEQRES 29 A 367 TYR LEU MET SEQRES 1 C 184 MET ALA GLN LYS PRO GLN ARG PRO ARG ARG PRO ALA SER SEQRES 2 C 184 PRO ILE SER THR ILE GLN PRO LYS ALA ASN PHE ASP ALA SEQRES 3 C 184 GLN GLN PHE ALA GLY THR TRP LEU LEU VAL ALA VAL GLY SEQRES 4 C 184 SER ALA CYS ARG PHE LEU GLN GLU GLN GLY HIS ARG ALA SEQRES 5 C 184 GLU ALA THR THR LEU HIS VAL ALA PRO GLN GLY THR ALA SEQRES 6 C 184 MET ALA VAL SER THR PHE ARG LYS LEU ASP GLY ILE CYS SEQRES 7 C 184 TRP GLN VAL ARG GLN LEU TYR GLY ASP THR GLY VAL LEU SEQRES 8 C 184 GLY ARG PHE LEU LEU GLN ALA ARG ASP ALA ARG GLY ALA SEQRES 9 C 184 VAL HIS VAL VAL VAL ALA GLU THR ASP TYR GLN SER PHE SEQRES 10 C 184 ALA VAL LEU TYR LEU GLU ARG ALA GLY GLN LEU SER VAL SEQRES 11 C 184 LYS LEU TYR ALA ARG SER LEU PRO VAL SER ASP SER VAL SEQRES 12 C 184 LEU SER GLY PHE GLU GLN ARG VAL GLN GLU ALA HIS LEU SEQRES 13 C 184 THR GLU ASP GLN ILE PHE TYR PHE PRO LYS TYR GLY PHE SEQRES 14 C 184 CYS GLU ALA ALA ASP GLN PHE HIS VAL LEU ASP GLU VAL SEQRES 15 C 184 ARG ARG
HET CL C 183 1
HETNAM CL CHLORIDE ION
FORMUL 3 CL CL 1- FORMUL 4 HOH *166(H2 O)
HELIX 1 1 GLY A 118 ALA A 123 1 6 HELIX 2 2 ASN A 202 LYS A 214 1 13 HELIX 3 3 ASP A 242 LYS A 251 1 10 HELIX 4 4 ASP A 281 GLU A 290 1 10 HELIX 5 5 ASN A 296 GLY A 308 1 13 HELIX 6 6 LYS A 329 GLY A 336 1 8 HELIX 7 7 THR A 338 LEU A 350 1 13 HELIX 8 8 ASP A 367 GLY A 373 1 7 HELIX 9 9 THR A 377 MET A 384 1 8 HELIX 10 10 THR A 412 LEU A 420 1 9 HELIX 11 11 HIS A 435 THR A 441 5 7 HELIX 12 12 LEU A 446 MET A 462 1 17 HELIX 13 13 CYS C 40 GLU C 45 1 6 HELIX 14 14 SER C 138 ALA C 152 1 15 HELIX 15 15 THR C 155 ASP C 157 5 3 HELIX 16 16 ASP C 172 PHE C 174 5 3
SHEET 1 A 6 GLU A 132 SER A 136 0 SHEET 2 A 6 LEU A 124 ASN A 127 -1 N ASN A 127 O GLU A 132 SHEET 3 A 6 HIS A 310 ASP A 328 -1 O HIS A 310 N TYR A 126 SHEET 4 A 6 VAL A 425 PRO A 433 -1 O ASP A 428 N SER A 316 SHEET 5 A 6 PRO A 230 VAL A 235 -1 N LEU A 232 O MET A 431 SHEET 6 A 6 PHE A 218 ILE A 222 -1 N THR A 221 O LEU A 231 SHEET 1 B 4 PHE A 182 PHE A 187 0 SHEET 2 B 4 PHE A 257 MET A 273 -1 O HIS A 270 N HIS A 186 SHEET 3 B 4 HIS A 310 ASP A 328 -1 O ILE A 327 N ILE A 258 SHEET 4 B 4 VAL A 386 SER A 391 -1 O ASP A 388 N VAL A 326 SHEET 1 C 4 SER A 196 TYR A 200 0 SHEET 2 C 4 PHE A 257 MET A 273 -1 O PHE A 263 N SER A 196 SHEET 3 C 4 HIS A 310 ASP A 328 -1 O ILE A 327 N ILE A 258 SHEET 4 C 4 VAL A 386 SER A 391 -1 O ASP A 388 N VAL A 326 SHEET 1 D 2 THR A 149 ASN A 152 0 SHEET 2 D 2 LYS A 174 ARG A 177 -1 O LYS A 174 N ASN A 152 SHEET 1 E 2 LEU A 158 ASP A 161 0 SHEET 2 E 2 ARG A 166 TYR A 169 -1 O ARG A 166 N ASP A 161 SHEET 1 F 6 ARG C 91 LEU C 94 0 SHEET 2 F 6 VAL C 103 THR C 110 -1 O VAL C 105 N PHE C 92 SHEET 3 F 6 PHE C 115 GLU C 121 -1 O VAL C 117 N GLU C 109 SHEET 4 F 6 SER C 127 ALA C 132 -1 O LYS C 129 N LEU C 118 SHEET 5 F 6 GLY C 29 SER C 38 -1 N GLY C 37 O VAL C 128 SHEET 6 F 6 ILE C 159 TYR C 161 -1 O PHE C 160 N VAL C 36 SHEET 1 G 9 ARG C 91 LEU C 94 0 SHEET 2 G 9 VAL C 103 THR C 110 -1 O VAL C 105 N PHE C 92 SHEET 3 G 9 PHE C 115 GLU C 121 -1 O VAL C 117 N GLU C 109 SHEET 4 G 9 SER C 127 ALA C 132 -1 O LYS C 129 N LEU C 118 SHEET 5 G 9 GLY C 29 SER C 38 -1 N GLY C 37 O VAL C 128 SHEET 6 G 9 THR C 54 ALA C 58 -1 O LEU C 55 N TRP C 31 SHEET 7 G 9 ALA C 65 LEU C 72 -1 O ALA C 65 N ALA C 58 SHEET 8 G 9 ILE C 75 LEU C 82 -1 O VAL C 79 N THR C 68 SHEET 9 G 9 VAL C 176 ASP C 178 1 O LEU C 177 N ARG C 80
SSBOND 1 CYS A 110 CYS A 147 1555 1555 2.03 SSBOND 2 CYS A 164 CYS C 40 1555 1555 2.07 SSBOND 3 CYS A 345 CYS A 369 1555 1555 2.74 SSBOND 4 CYS C 76 CYS C 168 1555 1555 2.11
CISPEP 1 LEU C 135 PRO C 136 0 2.61
SITE 1 AC1 2 HIS A 310 GLY C 166
CRYST1 96.553 126.087 51.887 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010357 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007931 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019273 0.00000