10 20 30 40 50 60 70 80 2R6P - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRUS/IMMUNE SYSTEM 06-SEP-07 2R6P
TITLE FIT OF E PROTEIN AND FAB 1A1D-2 INTO 24 ANGSTROM RESOLUTION TITLE 2 CRYOEM MAP OF FAB COMPLEXED WITH DENGUE 2 VIRUS.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR ENVELOPE PROTEIN E; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: E PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEAVY CHAIN OF 1A1D-2; COMPND 8 CHAIN: D, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LIGHT CHAIN OF 1A1D-2; COMPND 12 CHAIN: E, G; COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2 PUERTO RICO/PR159- SOURCE 3 S1/1969; SOURCE 4 ORGANISM_TAXID: 11066; SOURCE 5 STRAIN: PR-159-S1; SOURCE 6 GENE: E PROTEIN; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 STRAIN: BALBC; SOURCE 17 GENE: IMMUNOGLOBULIN; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 21 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 22 ORGANISM_TAXID: 10090; SOURCE 23 STRAIN: BALBC; SOURCE 24 GENE: IMMUNOGLOBULIN; SOURCE 25 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA
KEYWDS FAB, DENGUE, VIRUS, NEUTRALIZATION, VIRUS/IMMUNE SYSTEM KEYWDS 2 COMPLEX, ICOSAHEDRAL VIRUS
EXPDTA ELECTRON MICROSCOPY
MDLTYP CA ATOMS ONLY, CHAIN A, B, C, D, E, F, G
AUTHOR S.M.LOK,V.K.KOSTYUCHENKO,H.A.HOLDAWAY,P.R.CHIPMAN,R.J KUHN, AUTHOR 2 M.G ROSSMANN
REVDAT 5 04-AUG-09 2R6P 1 REMARK REVDAT 4 09-JUN-09 2R6P 1 REVDAT REVDAT 3 24-FEB-09 2R6P 1 VERSN REVDAT 2 02-DEC-08 2R6P 1 JRNL REVDAT 1 25-DEC-07 2R6P 0
JRNL AUTH S.M.LOK,V.KOSTYUCHENKO,G.E.NYBAKKEN,H.A.HOLDAWAY, JRNL AUTH 2 A.J.BATTISTI,S.SUKUPOLVI-PETTY,D.SEDLAK, JRNL AUTH 3 D.H.FREMONT,P.R.CHIPMAN,J.T.ROEHRIG,M.S.DIAMOND, JRNL AUTH 4 R.J.KUHN,M.G.ROSSMANN JRNL TITL BINDING OF A NEUTRALIZING ANTIBODY TO DENGUE VIRUS JRNL TITL 2 ALTERS THE ARRANGEMENT OF SURFACE GLYCOPROTEINS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 312 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18264114 JRNL DOI 10.1038/NSMB.1382
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 24.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMFIT REMARK 3 RECONSTRUCTION SCHEMA : PROJECTION MATCHING REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1THD REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY REMARK 3 REFINEMENT TARGET : USING EMFIT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : PLACE COORDINATES MANUALLY AND THEN REMARK 3 OPTIMISE POSITION USING PROGRAM REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : 2.740 REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 24.000 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : PHASE FLIP REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: THE COORDINATES IN THIS ENTRY CONTAIN CA ONLY
REMARK 4 REMARK 4 2R6P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB044492.
REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : ICOSAHEDRAL REMARK 245 NAME OF SAMPLE : FAB FRAGMENT OF MAB 1A1D-2 REMARK 245 COMPLEXED WITH DENGUE 2 VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.60 REMARK 245 SAMPLE SUPPORT DETAILS : 400 MESH COPPER GRID REMARK 245 SAMPLE VITRIFICATION DETAILS : SAMPLES WERE PREPARED AS REMARK 245 THIN LAYERS OF VITREOUS ICE REMARK 245 AND MAINTAINED AT LIQUID REMARK 245 NITROGEN TEMPERATURE IN THE REMARK 245 ELECTRON MICROSCOPE REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : 12 MM TRIS-HCL, 120 MM NACL, REMARK 245 1 MM EDTA REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 21-MAR-07 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 87.00 REMARK 245 MICROSCOPE MODEL : FEI/PHILIPS CM200T REMARK 245 DETECTOR TYPE : KODAK SO163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 2276.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3373.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2.39 REMARK 245 ILLUMINATION MODE : FLOOD BEAM LOW DOSE REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : 51040 REMARK 245 SOURCE : SCHOTTKY FIELD EMISSION REMARK 245 GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : LOW DOSE
REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS.
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I).
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 2 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 3 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 7 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 8 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 9 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 10 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 12 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 12 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 13 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 13 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 14 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 14 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 15 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 15 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 17 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 17 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 18 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 18 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 18 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 19 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 19 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 19 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 20 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 20 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 22 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 22 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 23 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 24 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 25 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 25 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 27 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 28 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 28 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 29 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 29 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 30 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 30 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 32 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 32 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 33 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 33 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 34 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 35 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 37 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 38 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 38 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 39 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 39 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 40 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 40 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 42 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 43 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 43 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 44 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 44 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 45 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 45 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 47 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 47 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 48 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 48 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 49 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 50 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 52 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 52 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 53 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 53 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 54 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 55 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 57 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 58 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 58 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 59 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 60 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 60 0.809017 -0.309017 -0.500000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 295 REMARK 465 GLY A 296 REMARK 465 MET A 297 REMARK 465 GLY A 395 REMARK 465 LYS C 295 REMARK 465 GLY C 296 REMARK 465 MET C 297 REMARK 465 GLY C 395
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-1418 RELATED DB: EMDB
DBREF 2R6P A 1 395 UNP P18356 POLG_DEN2U 181 570 DBREF 2R6P B 1 395 UNP P18356 POLG_DEN2U 181 570 DBREF 2R6P C 1 395 UNP P18356 POLG_DEN2U 181 570 DBREF 2R6P D 1 216 PDB 2R6P 2R6P 1 216 DBREF 2R6P E 1 206 PDB 2R6P 2R6P 1 206 DBREF 2R6P F 1 216 PDB 2R6P 2R6P 1 216 DBREF 2R6P G 1 206 PDB 2R6P 2R6P 1 206
SEQRES 1 A 390 MET ARG CYS ILE GLY ILE SER ASN ARG ASP PHE VAL GLU SEQRES 2 A 390 GLY VAL SER SER TRP VAL ASP ILE VAL LEU GLU HIS GLY SEQRES 3 A 390 SER CYS VAL THR THR MET ALA LYS ASN LYS PRO THR LEU SEQRES 4 A 390 ASP PHE GLU LEU ILE LYS THR GLU ALA LYS GLN PRO ALA SEQRES 5 A 390 THR LEU ARG LYS TYR CYS ILE GLU ALA LYS LEU THR ASN SEQRES 6 A 390 THR THR THR ASP SER ARG CYS PRO THR GLN GLY GLU PRO SEQRES 7 A 390 THR LEU ASN GLU GLU GLN ASP LYS ARG PHE VAL CYS LYS SEQRES 8 A 390 HIS SER MET VAL ASP ARG GLY TRP GLY ASN GLY CYS GLY SEQRES 9 A 390 LEU PHE GLY LYS GLY GLY ILE VAL THR CYS ALA MET PHE SEQRES 10 A 390 THR CYS LYS LYS ASN MET GLU GLY LYS ILE VAL GLN PRO SEQRES 11 A 390 GLU ASN LEU GLU TYR THR VAL VAL ILE THR PRO HIS SER SEQRES 12 A 390 GLY GLU GLU HIS ALA VAL GLY ASN ASP THR GLY LYS HIS SEQRES 13 A 390 GLY LYS GLU VAL LYS ILE THR PRO GLN SER SER ILE THR SEQRES 14 A 390 GLU ALA GLU LEU THR GLY TYR GLY THR VAL THR MET GLU SEQRES 15 A 390 CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU MET VAL SEQRES 16 A 390 LEU LEU GLN MET LYS ASP LYS ALA TRP LEU VAL HIS ARG SEQRES 17 A 390 GLN TRP PHE LEU ASP LEU PRO LEU PRO TRP LEU PRO GLY SEQRES 18 A 390 ALA GLY SER ASN TRP ILE GLN LYS GLU THR LEU VAL THR SEQRES 19 A 390 PHE LYS ASN PRO HIS ALA LYS LYS GLN ASP VAL VAL VAL SEQRES 20 A 390 LEU GLY SER GLN GLU GLY ALA MET HIS THR ALA LEU THR SEQRES 21 A 390 GLY ALA THR GLU ILE GLN MET SER SER GLY ASN LEU LEU SEQRES 22 A 390 PHE THR GLY HIS LEU LYS CYS ARG LEU ARG MET ASP LYS SEQRES 23 A 390 LEU GLN LEU LYS GLY MET SER TYR SER MET CYS THR GLY SEQRES 24 A 390 LYS PHE LYS VAL VAL LYS GLU ILE ALA GLU THR GLN HIS SEQRES 25 A 390 GLY THR ILE VAL ILE ARG VAL GLN TYR GLU GLY ASP GLY SEQRES 26 A 390 SER PRO CYS LYS ILE PRO PHE GLU ILE MET ASP LEU GLU SEQRES 27 A 390 LYS ARG HIS VAL LEU GLY ARG LEU ILE THR VAL ASN PRO SEQRES 28 A 390 ILE VAL THR GLU LYS ASP SER PRO VAL ASN ILE GLU ALA SEQRES 29 A 390 GLU PRO PRO PHE GLY ASP SER TYR ILE ILE ILE GLY VAL SEQRES 30 A 390 GLU PRO GLY GLN LEU LYS LEU ASN TRP PHE LYS LYS GLY SEQRES 1 B 390 MET ARG CYS ILE GLY ILE SER ASN ARG ASP PHE VAL GLU SEQRES 2 B 390 GLY VAL SER SER TRP VAL ASP ILE VAL LEU GLU HIS GLY SEQRES 3 B 390 SER CYS VAL THR THR MET ALA LYS ASN LYS PRO THR LEU SEQRES 4 B 390 ASP PHE GLU LEU ILE LYS THR GLU ALA LYS GLN PRO ALA SEQRES 5 B 390 THR LEU ARG LYS TYR CYS ILE GLU ALA LYS LEU THR ASN SEQRES 6 B 390 THR THR THR ASP SER ARG CYS PRO THR GLN GLY GLU PRO SEQRES 7 B 390 THR LEU ASN GLU GLU GLN ASP LYS ARG PHE VAL CYS LYS SEQRES 8 B 390 HIS SER MET VAL ASP ARG GLY TRP GLY ASN GLY CYS GLY SEQRES 9 B 390 LEU PHE GLY LYS GLY GLY ILE VAL THR CYS ALA MET PHE SEQRES 10 B 390 THR CYS LYS LYS ASN MET GLU GLY LYS ILE VAL GLN PRO SEQRES 11 B 390 GLU ASN LEU GLU TYR THR VAL VAL ILE THR PRO HIS SER SEQRES 12 B 390 GLY GLU GLU HIS ALA VAL GLY ASN ASP THR GLY LYS HIS SEQRES 13 B 390 GLY LYS GLU VAL LYS ILE THR PRO GLN SER SER ILE THR SEQRES 14 B 390 GLU ALA GLU LEU THR GLY TYR GLY THR VAL THR MET GLU SEQRES 15 B 390 CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU MET VAL SEQRES 16 B 390 LEU LEU GLN MET LYS ASP LYS ALA TRP LEU VAL HIS ARG SEQRES 17 B 390 GLN TRP PHE LEU ASP LEU PRO LEU PRO TRP LEU PRO GLY SEQRES 18 B 390 ALA GLY SER ASN TRP ILE GLN LYS GLU THR LEU VAL THR SEQRES 19 B 390 PHE LYS ASN PRO HIS ALA LYS LYS GLN ASP VAL VAL VAL SEQRES 20 B 390 LEU GLY SER GLN GLU GLY ALA MET HIS THR ALA LEU THR SEQRES 21 B 390 GLY ALA THR GLU ILE GLN MET SER SER GLY ASN LEU LEU SEQRES 22 B 390 PHE THR GLY HIS LEU LYS CYS ARG LEU ARG MET ASP LYS SEQRES 23 B 390 LEU GLN LEU LYS GLY MET SER TYR SER MET CYS THR GLY SEQRES 24 B 390 LYS PHE LYS VAL VAL LYS GLU ILE ALA GLU THR GLN HIS SEQRES 25 B 390 GLY THR ILE VAL ILE ARG VAL GLN TYR GLU GLY ASP GLY SEQRES 26 B 390 SER PRO CYS LYS ILE PRO PHE GLU ILE MET ASP LEU GLU SEQRES 27 B 390 LYS ARG HIS VAL LEU GLY ARG LEU ILE THR VAL ASN PRO SEQRES 28 B 390 ILE VAL THR GLU LYS ASP SER PRO VAL ASN ILE GLU ALA SEQRES 29 B 390 GLU PRO PRO PHE GLY ASP SER TYR ILE ILE ILE GLY VAL SEQRES 30 B 390 GLU PRO GLY GLN LEU LYS LEU ASN TRP PHE LYS LYS GLY SEQRES 1 C 390 MET ARG CYS ILE GLY ILE SER ASN ARG ASP PHE VAL GLU SEQRES 2 C 390 GLY VAL SER SER TRP VAL ASP ILE VAL LEU GLU HIS GLY SEQRES 3 C 390 SER CYS VAL THR THR MET ALA LYS ASN LYS PRO THR LEU SEQRES 4 C 390 ASP PHE GLU LEU ILE LYS THR GLU ALA LYS GLN PRO ALA SEQRES 5 C 390 THR LEU ARG LYS TYR CYS ILE GLU ALA LYS LEU THR ASN SEQRES 6 C 390 THR THR THR ASP SER ARG CYS PRO THR GLN GLY GLU PRO SEQRES 7 C 390 THR LEU ASN GLU GLU GLN ASP LYS ARG PHE VAL CYS LYS SEQRES 8 C 390 HIS SER MET VAL ASP ARG GLY TRP GLY ASN GLY CYS GLY SEQRES 9 C 390 LEU PHE GLY LYS GLY GLY ILE VAL THR CYS ALA MET PHE SEQRES 10 C 390 THR CYS LYS LYS ASN MET GLU GLY LYS ILE VAL GLN PRO SEQRES 11 C 390 GLU ASN LEU GLU TYR THR VAL VAL ILE THR PRO HIS SER SEQRES 12 C 390 GLY GLU GLU HIS ALA VAL GLY ASN ASP THR GLY LYS HIS SEQRES 13 C 390 GLY LYS GLU VAL LYS ILE THR PRO GLN SER SER ILE THR SEQRES 14 C 390 GLU ALA GLU LEU THR GLY TYR GLY THR VAL THR MET GLU SEQRES 15 C 390 CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU MET VAL SEQRES 16 C 390 LEU LEU GLN MET LYS ASP LYS ALA TRP LEU VAL HIS ARG SEQRES 17 C 390 GLN TRP PHE LEU ASP LEU PRO LEU PRO TRP LEU PRO GLY SEQRES 18 C 390 ALA GLY SER ASN TRP ILE GLN LYS GLU THR LEU VAL THR SEQRES 19 C 390 PHE LYS ASN PRO HIS ALA LYS LYS GLN ASP VAL VAL VAL SEQRES 20 C 390 LEU GLY SER GLN GLU GLY ALA MET HIS THR ALA LEU THR SEQRES 21 C 390 GLY ALA THR GLU ILE GLN MET SER SER GLY ASN LEU LEU SEQRES 22 C 390 PHE THR GLY HIS LEU LYS CYS ARG LEU ARG MET ASP LYS SEQRES 23 C 390 LEU GLN LEU LYS GLY MET SER TYR SER MET CYS THR GLY SEQRES 24 C 390 LYS PHE LYS VAL VAL LYS GLU ILE ALA GLU THR GLN HIS SEQRES 25 C 390 GLY THR ILE VAL ILE ARG VAL GLN TYR GLU GLY ASP GLY SEQRES 26 C 390 SER PRO CYS LYS ILE PRO PHE GLU ILE MET ASP LEU GLU SEQRES 27 C 390 LYS ARG HIS VAL LEU GLY ARG LEU ILE THR VAL ASN PRO SEQRES 28 C 390 ILE VAL THR GLU LYS ASP SER PRO VAL ASN ILE GLU ALA SEQRES 29 C 390 GLU PRO PRO PHE GLY ASP SER TYR ILE ILE ILE GLY VAL SEQRES 30 C 390 GLU PRO GLY GLN LEU LYS LEU ASN TRP PHE LYS LYS GLY SEQRES 1 D 216 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 D 216 PRO GLY ALA SER VAL LYS LEU SER CYS THR ALA SER GLY SEQRES 3 D 216 PHE ASN ILE LYS ASP THR TYR MET HIS TRP VAL LYS GLN SEQRES 4 D 216 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 D 216 PRO ALA ASN GLY TYR SER LYS TYR ASP PRO LYS PHE GLN SEQRES 6 D 216 GLY LYS ALA THR ILE THR ALA ASP THR SER SER ASN ALA SEQRES 7 D 216 ALA TYR LEU GLN LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 D 216 ALA VAL TYR PHE CYS ALA ARG ASP TYR GLU GLY PHE ALA SEQRES 9 D 216 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 10 D 216 LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 D 216 ALA ALA ALA ALA THR SER SER SER VAL THR LEU GLY CYS SEQRES 12 D 216 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR SEQRES 13 D 216 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 D 216 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 D 216 SER VAL THR VAL THR SER SER THR TRP PRO SER GLN THR SEQRES 16 D 216 ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 D 216 VAL ASP LYS LYS ILE GLU PRO ARG SEQRES 1 E 206 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 E 206 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 E 206 GLU SER VAL VAL ARG TYR GLY ASN SER PHE MET HIS TRP SEQRES 4 E 206 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 E 206 TYR ARG ALA SER SER LEU GLU SER GLY ILE PRO THR ARG SEQRES 6 E 206 PHE SER GLY SER GLY SER ARG THR ASP PHE THR LEU THR SEQRES 7 E 206 ILE ASN PRO VAL GLU ALA ASP ASP VAL ALA THR TYR TYR SEQRES 8 E 206 CYS GLN GLN THR ASN VAL ASP PRO TRP ALA PHE GLY GLY SEQRES 9 E 206 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 E 206 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 E 206 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 E 206 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP ARG SEQRES 13 E 206 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 E 206 THR TYR SER MET SER SER THR LEU THR LEU THR LYS ASP SEQRES 15 E 206 GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA THR SEQRES 16 E 206 SER PRO ILE VAL LYS SER PHE ASN ARG ASN GLU SEQRES 1 F 216 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 F 216 PRO GLY ALA SER VAL LYS LEU SER CYS THR ALA SER GLY SEQRES 3 F 216 PHE ASN ILE LYS ASP THR TYR MET HIS TRP VAL LYS GLN SEQRES 4 F 216 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 F 216 PRO ALA ASN GLY TYR SER LYS TYR ASP PRO LYS PHE GLN SEQRES 6 F 216 GLY LYS ALA THR ILE THR ALA ASP THR SER SER ASN ALA SEQRES 7 F 216 ALA TYR LEU GLN LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 F 216 ALA VAL TYR PHE CYS ALA ARG ASP TYR GLU GLY PHE ALA SEQRES 9 F 216 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 10 F 216 LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 F 216 ALA ALA ALA ALA THR SER SER SER VAL THR LEU GLY CYS SEQRES 12 F 216 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR SEQRES 13 F 216 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 F 216 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 F 216 SER VAL THR VAL THR SER SER THR TRP PRO SER GLN THR SEQRES 16 F 216 ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 F 216 VAL ASP LYS LYS ILE GLU PRO ARG SEQRES 1 G 206 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 G 206 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 G 206 GLU SER VAL VAL ARG TYR GLY ASN SER PHE MET HIS TRP SEQRES 4 G 206 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 G 206 TYR ARG ALA SER SER LEU GLU SER GLY ILE PRO THR ARG SEQRES 6 G 206 PHE SER GLY SER GLY SER ARG THR ASP PHE THR LEU THR SEQRES 7 G 206 ILE ASN PRO VAL GLU ALA ASP ASP VAL ALA THR TYR TYR SEQRES 8 G 206 CYS GLN GLN THR ASN VAL ASP PRO TRP ALA PHE GLY GLY SEQRES 9 G 206 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 G 206 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 G 206 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 G 206 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP ARG SEQRES 13 G 206 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 G 206 THR TYR SER MET SER SER THR LEU THR LEU THR LYS ASP SEQRES 15 G 206 GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA THR SEQRES 16 G 206 SER PRO ILE VAL LYS SER PHE ASN ARG ASN GLU
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000