10 20 30 40 50 60 70 80 2R6M - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 06-SEP-07 2R6M
TITLE CRYSTAL STRUCTURE OF RAT CK2-BETA SUBUNIT
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE II SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REGULATORY SUBUNIT OF PROTEIN KINASE CK2, CK II COMPND 5 BETA, PHOSVITIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUBS520
KEYWDS ZINC BINDING, REGULATORY SUBUNIT, PHOSPHORYLATION, WNT KEYWDS 2 SIGNALING PATHWAY, METAL BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.SHEN
REVDAT 2 17-MAR-09 2R6M 1 JRNL VERSN REVDAT 1 23-SEP-08 2R6M 0
JRNL AUTH W.ZHOU,X.QIN,X.YAN,X.XIE,L.LI,S.FANG,J.LONG, JRNL AUTH 2 J.ADELMAN,W.-J.TANG,Y.SHEN JRNL TITL CRYSTAL STRUCTURES OF CATALYTIC AND REGULATORY JRNL TITL 2 SUBUNITS OF RAT PROTEIN KINASE CK2 JRNL REF CHIN.SCI.BULL. V. 54 220 2009 JRNL REFN ISSN 1001-6538 JRNL DOI 10.1007/S11434-008-0580-2
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 98745.700 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 8864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 470 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1307 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 72 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.041 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.37000 REMARK 3 B22 (A**2) : 4.37000 REMARK 3 B33 (A**2) : -8.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.47 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.63 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.89 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.980 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.700 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.490 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.380 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 32.79 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED
REMARK 4 REMARK 4 2R6M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB044489.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10149 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 13.400 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59100 REMARK 200 R SYM FOR SHELL (I) : 0.51100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, PEG 3350, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.59150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.00500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.29575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.00500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.88725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.00500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.00500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.29575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.00500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.00500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.88725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.59150 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -57.00500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -57.00500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -18.29575
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 58 REMARK 465 ASP A 59 REMARK 465 GLU A 60 REMARK 465 GLU A 61 REMARK 465 LEU A 62 REMARK 465 GLU A 63 REMARK 465 ASP A 64 REMARK 465 ASN A 65 REMARK 465 PRO A 66 REMARK 465 ASN A 67 REMARK 465 HIS A 193 REMARK 465 PRO A 194 REMARK 465 MET A 195 REMARK 465 ALA A 196 REMARK 465 TYR A 197 REMARK 465 GLN A 198 REMARK 465 LEU A 199 REMARK 465 GLN A 200 REMARK 465 LEU A 201 REMARK 465 GLN A 202 REMARK 465 ALA A 203 REMARK 465 ALA A 204 REMARK 465 SER A 205 REMARK 465 ASN A 206 REMARK 465 PHE A 207 REMARK 465 LYS A 208 REMARK 465 SER A 209 REMARK 465 PRO A 210 REMARK 465 VAL A 211 REMARK 465 LYS A 212 REMARK 465 THR A 213 REMARK 465 ILE A 214 REMARK 465 ARG A 215 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 60 REMARK 465 GLU B 61 REMARK 465 LEU B 62 REMARK 465 GLU B 63 REMARK 465 ASP B 64 REMARK 465 ASN B 65 REMARK 465 PRO B 66 REMARK 465 MET B 195 REMARK 465 ALA B 196 REMARK 465 TYR B 197 REMARK 465 GLN B 198 REMARK 465 LEU B 199 REMARK 465 GLN B 200 REMARK 465 LEU B 201 REMARK 465 GLN B 202 REMARK 465 ALA B 203 REMARK 465 ALA B 204 REMARK 465 SER B 205 REMARK 465 ASN B 206 REMARK 465 PHE B 207 REMARK 465 LYS B 208 REMARK 465 SER B 209 REMARK 465 PRO B 210 REMARK 465 VAL B 211 REMARK 465 LYS B 212 REMARK 465 THR B 213 REMARK 465 ILE B 214 REMARK 465 ARG B 215
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 7 CG1 CG2 REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 SER A 69 OG REMARK 470 ASP A 70 CG OD1 OD2 REMARK 470 LEU A 71 CG CD1 CD2 REMARK 470 ILE A 72 CG1 CG2 CD1 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 PRO B 58 CG CD REMARK 470 ASP B 59 CG OD1 OD2 REMARK 470 ASN B 67 CG OD1 ND2 REMARK 470 GLN B 68 CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 LEU B 71 CD1 LEU B 71 8554 1.92 REMARK 500 OE1 GLN B 103 OE1 GLN B 103 8555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 140 CB CYS B 140 SG -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 69 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 41 38.90 -95.26 REMARK 500 GLN A 42 -30.84 -145.96 REMARK 500 TYR A 46 -72.06 -44.79 REMARK 500 ASP A 70 41.33 -83.24 REMARK 500 ILE A 88 13.49 -62.96 REMARK 500 ALA A 131 145.16 -175.14 REMARK 500 MET A 141 34.70 73.57 REMARK 500 ARG A 150 2.88 -65.62 REMARK 500 MET A 169 44.94 -92.82 REMARK 500 VAL A 170 -24.23 -164.77 REMARK 500 TYR A 188 57.17 -151.69 REMARK 500 ASN B 19 43.97 -109.94 REMARK 500 GLU B 41 37.31 -95.18 REMARK 500 GLN B 42 -30.40 -144.47 REMARK 500 GLU B 57 129.11 -39.69 REMARK 500 ILE B 88 12.29 -62.22 REMARK 500 GLU B 115 66.52 39.56 REMARK 500 ALA B 131 144.73 -174.89 REMARK 500 MET B 141 34.94 73.90 REMARK 500 ARG B 150 4.39 -64.83 REMARK 500 MET B 169 46.17 -94.65 REMARK 500 VAL B 170 -23.92 -165.54 REMARK 500 TYR B 188 56.40 -151.17 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 219 DISTANCE = 5.11 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 216 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 109 SG REMARK 620 2 CYS A 114 SG 103.6 REMARK 620 3 CYS A 137 SG 111.7 112.7 REMARK 620 4 CYS A 140 SG 105.5 86.9 131.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 216 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 109 SG REMARK 620 2 CYS B 114 SG 99.4 REMARK 620 3 CYS B 137 SG 107.9 112.9 REMARK 620 4 CYS B 140 SG 104.5 91.1 135.2 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 216 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 216
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R7I RELATED DB: PDB
DBREF 2R6M A 1 215 UNP P67874 CSK2B_RAT 1 215 DBREF 2R6M B 1 215 UNP P67874 CSK2B_RAT 1 215
SEQRES 1 A 215 MET SER SER SER GLU GLU VAL SER TRP ILE SER TRP PHE SEQRES 2 A 215 CYS GLY LEU ARG GLY ASN GLU PHE PHE CYS GLU VAL ASP SEQRES 3 A 215 GLU ASP TYR ILE GLN ASP LYS PHE ASN LEU THR GLY LEU SEQRES 4 A 215 ASN GLU GLN VAL PRO HIS TYR ARG GLN ALA LEU ASP MET SEQRES 5 A 215 ILE LEU ASP LEU GLU PRO ASP GLU GLU LEU GLU ASP ASN SEQRES 6 A 215 PRO ASN GLN SER ASP LEU ILE GLU GLN ALA ALA GLU MET SEQRES 7 A 215 LEU TYR GLY LEU ILE HIS ALA ARG TYR ILE LEU THR ASN SEQRES 8 A 215 ARG GLY ILE ALA GLN MET LEU GLU LYS TYR GLN GLN GLY SEQRES 9 A 215 ASP PHE GLY TYR CYS PRO ARG VAL TYR CYS GLU ASN GLN SEQRES 10 A 215 PRO MET LEU PRO ILE GLY LEU SER ASP ILE PRO GLY GLU SEQRES 11 A 215 ALA MET VAL LYS LEU TYR CYS PRO LYS CYS MET ASP VAL SEQRES 12 A 215 TYR THR PRO LYS SER SER ARG HIS HIS HIS THR ASP GLY SEQRES 13 A 215 ALA TYR PHE GLY THR GLY PHE PRO HIS MET LEU PHE MET SEQRES 14 A 215 VAL HIS PRO GLU TYR ARG PRO LYS ARG PRO ALA ASN GLN SEQRES 15 A 215 PHE VAL PRO ARG LEU TYR GLY PHE LYS ILE HIS PRO MET SEQRES 16 A 215 ALA TYR GLN LEU GLN LEU GLN ALA ALA SER ASN PHE LYS SEQRES 17 A 215 SER PRO VAL LYS THR ILE ARG SEQRES 1 B 215 MET SER SER SER GLU GLU VAL SER TRP ILE SER TRP PHE SEQRES 2 B 215 CYS GLY LEU ARG GLY ASN GLU PHE PHE CYS GLU VAL ASP SEQRES 3 B 215 GLU ASP TYR ILE GLN ASP LYS PHE ASN LEU THR GLY LEU SEQRES 4 B 215 ASN GLU GLN VAL PRO HIS TYR ARG GLN ALA LEU ASP MET SEQRES 5 B 215 ILE LEU ASP LEU GLU PRO ASP GLU GLU LEU GLU ASP ASN SEQRES 6 B 215 PRO ASN GLN SER ASP LEU ILE GLU GLN ALA ALA GLU MET SEQRES 7 B 215 LEU TYR GLY LEU ILE HIS ALA ARG TYR ILE LEU THR ASN SEQRES 8 B 215 ARG GLY ILE ALA GLN MET LEU GLU LYS TYR GLN GLN GLY SEQRES 9 B 215 ASP PHE GLY TYR CYS PRO ARG VAL TYR CYS GLU ASN GLN SEQRES 10 B 215 PRO MET LEU PRO ILE GLY LEU SER ASP ILE PRO GLY GLU SEQRES 11 B 215 ALA MET VAL LYS LEU TYR CYS PRO LYS CYS MET ASP VAL SEQRES 12 B 215 TYR THR PRO LYS SER SER ARG HIS HIS HIS THR ASP GLY SEQRES 13 B 215 ALA TYR PHE GLY THR GLY PHE PRO HIS MET LEU PHE MET SEQRES 14 B 215 VAL HIS PRO GLU TYR ARG PRO LYS ARG PRO ALA ASN GLN SEQRES 15 B 215 PHE VAL PRO ARG LEU TYR GLY PHE LYS ILE HIS PRO MET SEQRES 16 B 215 ALA TYR GLN LEU GLN LEU GLN ALA ALA SER ASN PHE LYS SEQRES 17 B 215 SER PRO VAL LYS THR ILE ARG
HET ZN A 216 1 HET ZN B 216 1
HETNAM ZN ZINC ION
FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *39(H2 O)
HELIX 1 1 SER A 8 LEU A 16 1 9 HELIX 2 2 ASP A 26 ASP A 32 1 7 HELIX 3 3 LYS A 33 LEU A 36 5 4 HELIX 4 4 HIS A 45 LEU A 54 1 10 HELIX 5 5 GLU A 73 ILE A 88 1 16 HELIX 6 6 THR A 90 GLN A 103 1 14 HELIX 7 7 ARG A 111 GLU A 115 5 5 HELIX 8 8 ASP A 155 PHE A 159 5 5 HELIX 9 9 GLY A 162 MET A 169 1 8 HELIX 10 10 HIS A 171 ARG A 175 5 5 HELIX 11 11 SER B 8 LEU B 16 1 9 HELIX 12 12 ASP B 26 ASP B 32 1 7 HELIX 13 13 LYS B 33 LEU B 36 5 4 HELIX 14 14 HIS B 45 LEU B 54 1 10 HELIX 15 15 ASP B 70 ILE B 88 1 19 HELIX 16 16 THR B 90 GLN B 103 1 14 HELIX 17 17 ARG B 111 GLU B 115 5 5 HELIX 18 18 ASP B 155 PHE B 159 5 5 HELIX 19 19 GLY B 162 MET B 169 1 8 HELIX 20 20 HIS B 171 ARG B 175 5 5
SHEET 1 A 3 LEU A 120 ILE A 122 0 SHEET 2 A 3 LYS A 134 CYS A 137 -1 O TYR A 136 N LEU A 120 SHEET 3 A 3 ASP A 142 TYR A 144 -1 O TYR A 144 N LEU A 135 SHEET 1 B 3 LEU B 120 ILE B 122 0 SHEET 2 B 3 LYS B 134 TYR B 136 -1 O TYR B 136 N LEU B 120 SHEET 3 B 3 VAL B 143 TYR B 144 -1 O TYR B 144 N LEU B 135
LINK SG CYS A 109 ZN ZN A 216 1555 1555 2.36 LINK SG CYS A 114 ZN ZN A 216 1555 1555 2.48 LINK SG CYS A 137 ZN ZN A 216 1555 1555 2.38 LINK SG CYS A 140 ZN ZN A 216 1555 1555 2.41 LINK SG CYS B 109 ZN ZN B 216 1555 1555 2.46 LINK SG CYS B 114 ZN ZN B 216 1555 1555 2.51 LINK SG CYS B 137 ZN ZN B 216 1555 1555 2.43 LINK SG CYS B 140 ZN ZN B 216 1555 1555 2.34
CISPEP 1 HIS B 193 PRO B 194 0 -0.50
SITE 1 AC1 4 CYS A 109 CYS A 114 CYS A 137 CYS A 140 SITE 1 AC2 4 CYS B 109 CYS B 114 CYS B 137 CYS B 140
CRYST1 114.010 114.010 73.183 90.00 90.00 90.00 P 41 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008771 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008771 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013664 0.00000