10 20 30 40 50 60 70 80 2R2V - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DE NOVO PROTEIN 27-AUG-07 2R2V
TITLE SEQUENCE DETERMINANTS OF THE TOPOLOGY OF THE LAC REPRESSOR TITLE 2 TETRAMERIC COILED COIL
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN4 LEUCINE ZIPPER; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 GENE: GCN4, AAS3, ARG9; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 EXPRESSION VECTOR; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PAE4
KEYWDS COILED COILS, ANTI-PARALLEL TETRAMER, PROTEIN DESIGN, DE KEYWDS 2 NOVO PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.LIU,M.LU
REVDAT 2 24-FEB-09 2R2V 1 VERSN REVDAT 1 17-JUN-08 2R2V 0
JRNL AUTH J.LIU,Q.ZHENG,Y.DENG,Q.LI,N.R.KALLENBACH,M.LU JRNL TITL CONFORMATIONAL SPECIFICITY OF THE LAC REPRESSOR JRNL TITL 2 COILED-COIL TETRAMERIZATION DOMAIN. JRNL REF BIOCHEMISTRY V. 46 14951 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 18052214 JRNL DOI 10.1021/BI701930D
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1054 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1399 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.028 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2110 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2814 ; 1.088 ; 2.033 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 251 ; 4.309 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;35.662 ;25.778 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 443 ;17.259 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.050 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1495 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1025 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1455 ; 0.283 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 105 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.028 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1327 ; 0.536 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2023 ; 0.920 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 850 ; 1.699 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 791 ; 2.664 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6070 -10.0190 -8.5620 REMARK 3 T TENSOR REMARK 3 T11: -0.2665 T22: -0.1998 REMARK 3 T33: -0.1097 T12: -0.0192 REMARK 3 T13: -0.0360 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 3.0526 L22: 8.4863 REMARK 3 L33: 24.9146 L12: -1.1622 REMARK 3 L13: -0.1729 L23: -8.3091 REMARK 3 S TENSOR REMARK 3 S11: -0.1037 S12: 0.1652 S13: -0.1627 REMARK 3 S21: -0.0935 S22: 0.1452 S23: 0.5340 REMARK 3 S31: -0.0093 S32: -0.9500 S33: -0.0415 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): -29.7850 -1.1760 -4.2290 REMARK 3 T TENSOR REMARK 3 T11: -0.2224 T22: -0.1596 REMARK 3 T33: -0.0435 T12: 0.0163 REMARK 3 T13: -0.0007 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 4.3466 L22: 7.2173 REMARK 3 L33: 21.2755 L12: -2.5482 REMARK 3 L13: 4.6014 L23: -5.3746 REMARK 3 S TENSOR REMARK 3 S11: 0.1371 S12: 0.0363 S13: -0.0176 REMARK 3 S21: -0.1468 S22: 0.1699 S23: 0.7230 REMARK 3 S31: 0.3819 S32: -0.9266 S33: -0.3070 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 33 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6630 -0.3030 -2.4250 REMARK 3 T TENSOR REMARK 3 T11: -0.2290 T22: -0.2570 REMARK 3 T33: -0.1768 T12: 0.0080 REMARK 3 T13: -0.0102 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 4.9001 L22: 7.6723 REMARK 3 L33: 10.2158 L12: -2.5723 REMARK 3 L13: 3.3558 L23: -3.8162 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: 0.0681 S13: 0.1593 REMARK 3 S21: 0.0241 S22: -0.0969 S23: 0.0098 REMARK 3 S31: 0.0057 S32: 0.0913 S33: 0.0401 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 34 REMARK 3 ORIGIN FOR THE GROUP (A): -19.3790 -8.3300 -8.2490 REMARK 3 T TENSOR REMARK 3 T11: -0.2541 T22: -0.2281 REMARK 3 T33: -0.1832 T12: 0.0141 REMARK 3 T13: -0.0157 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 2.6957 L22: 6.8550 REMARK 3 L33: 11.9899 L12: -0.1244 REMARK 3 L13: -0.5868 L23: -5.5951 REMARK 3 S TENSOR REMARK 3 S11: 0.0881 S12: 0.0641 S13: -0.0052 REMARK 3 S21: 0.0142 S22: -0.0564 S23: -0.0165 REMARK 3 S31: -0.2214 S32: 0.1937 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 31 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7170 10.4040 12.5050 REMARK 3 T TENSOR REMARK 3 T11: -0.1574 T22: -0.2413 REMARK 3 T33: -0.1882 T12: -0.0102 REMARK 3 T13: -0.0283 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 18.9477 L22: 7.1855 REMARK 3 L33: 4.0134 L12: -5.7606 REMARK 3 L13: 1.2411 L23: 1.4605 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: 0.1272 S13: -0.8079 REMARK 3 S21: 0.1192 S22: -0.0133 S23: 0.3140 REMARK 3 S31: 0.1322 S32: -0.0667 S33: -0.1140 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 3 F 34 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3680 3.1000 6.5320 REMARK 3 T TENSOR REMARK 3 T11: -0.1100 T22: -0.1818 REMARK 3 T33: -0.1520 T12: 0.0549 REMARK 3 T13: -0.0657 T23: -0.1044 REMARK 3 L TENSOR REMARK 3 L11: 12.1503 L22: 13.0874 REMARK 3 L33: 5.0571 L12: -7.4132 REMARK 3 L13: 0.4529 L23: 3.0453 REMARK 3 S TENSOR REMARK 3 S11: -0.5611 S12: -0.7422 S13: 0.3051 REMARK 3 S21: 0.8556 S22: 0.8167 S23: -0.5121 REMARK 3 S31: 0.4137 S32: 0.2385 S33: -0.2556 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 33 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7550 7.6050 -0.4890 REMARK 3 T TENSOR REMARK 3 T11: -0.1625 T22: -0.2179 REMARK 3 T33: -0.1743 T12: -0.0481 REMARK 3 T13: -0.0588 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 17.1523 L22: 19.4613 REMARK 3 L33: 5.2384 L12: -12.9908 REMARK 3 L13: -1.3242 L23: 4.6356 REMARK 3 S TENSOR REMARK 3 S11: -0.2136 S12: -0.0545 S13: 0.6575 REMARK 3 S21: -0.0177 S22: 0.3649 S23: -0.9109 REMARK 3 S31: -0.2636 S32: 0.1728 S33: -0.1513 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 3 H 33 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5660 13.7690 4.9170 REMARK 3 T TENSOR REMARK 3 T11: -0.1695 T22: -0.0439 REMARK 3 T33: -0.1896 T12: 0.0057 REMARK 3 T13: -0.0485 T23: -0.0787 REMARK 3 L TENSOR REMARK 3 L11: 16.4944 L22: 8.8733 REMARK 3 L33: 4.3789 L12: -4.4775 REMARK 3 L13: 1.0607 L23: 2.0409 REMARK 3 S TENSOR REMARK 3 S11: 0.5040 S12: 1.4343 S13: -0.6349 REMARK 3 S21: -0.4676 S22: -0.2165 S23: -0.2921 REMARK 3 S31: -0.0858 S32: 0.4550 S33: -0.2876 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2R2V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB044355.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20545 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 51.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NRN REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 5% JEFFAMINE M REMARK 280 -600, 0.05M ZINC ACETATE, PH 4.8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.89650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.84475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.94825 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6640 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG B 34 REMARK 465 ARG C 34 REMARK 465 MET D 1 REMARK 465 GLY E 32 REMARK 465 GLU E 33 REMARK 465 ARG E 34 REMARK 465 MET F 1 REMARK 465 LYS F 2 REMARK 465 ARG G 34 REMARK 465 MET H 1 REMARK 465 LYS H 2 REMARK 465 ARG H 34
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG D 34 O HOH D 47 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS G 2 85.98 58.03 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 48 DISTANCE = 6.45 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 35 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 19 NE2 REMARK 620 2 GLU C 23 OE2 97.7 REMARK 620 3 CIT C 37 O3 177.6 84.2 REMARK 620 4 CIT C 37 O7 96.5 105.0 84.2 REMARK 620 5 CIT C 37 O5 88.9 173.3 89.1 74.3 REMARK 620 6 HOH G 44 O 93.6 87.7 85.2 162.6 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 35 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 19 NE2 REMARK 620 2 GLU D 23 OE2 96.8 REMARK 620 3 CIT D 38 O5 88.5 174.5 REMARK 620 4 CIT D 38 O7 99.7 103.8 73.5 REMARK 620 5 CIT D 38 O3 175.4 87.8 87.0 79.8 REMARK 620 6 HOH G 37 O 89.8 90.1 91.7 162.0 89.4 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 35 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 35 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 36 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 36 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 37 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT C 37 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT D 38 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT G 35 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT G 36
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZTA RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN
DBREF 2R2V A 1 34 PDB 2R2V 2R2V 1 34 DBREF 2R2V B 1 34 PDB 2R2V 2R2V 1 34 DBREF 2R2V C 1 34 PDB 2R2V 2R2V 1 34 DBREF 2R2V D 1 34 PDB 2R2V 2R2V 1 34 DBREF 2R2V E 1 34 PDB 2R2V 2R2V 1 34 DBREF 2R2V F 1 34 PDB 2R2V 2R2V 1 34 DBREF 2R2V G 1 34 PDB 2R2V 2R2V 1 34 DBREF 2R2V H 1 34 PDB 2R2V 2R2V 1 34
SEQRES 1 A 34 MET LYS LEU LYS GLN VAL ALA ASP LYS LEU GLU GLU VAL SEQRES 2 A 34 ALA SER LYS LEU TYR HIS ASN ALA ASN GLU LEU ALA ARG SEQRES 3 A 34 VAL ALA LYS LEU LEU GLY GLU ARG SEQRES 1 B 34 MET LYS LEU LYS GLN VAL ALA ASP LYS LEU GLU GLU VAL SEQRES 2 B 34 ALA SER LYS LEU TYR HIS ASN ALA ASN GLU LEU ALA ARG SEQRES 3 B 34 VAL ALA LYS LEU LEU GLY GLU ARG SEQRES 1 C 34 MET LYS LEU LYS GLN VAL ALA ASP LYS LEU GLU GLU VAL SEQRES 2 C 34 ALA SER LYS LEU TYR HIS ASN ALA ASN GLU LEU ALA ARG SEQRES 3 C 34 VAL ALA LYS LEU LEU GLY GLU ARG SEQRES 1 D 34 MET LYS LEU LYS GLN VAL ALA ASP LYS LEU GLU GLU VAL SEQRES 2 D 34 ALA SER LYS LEU TYR HIS ASN ALA ASN GLU LEU ALA ARG SEQRES 3 D 34 VAL ALA LYS LEU LEU GLY GLU ARG SEQRES 1 E 34 MET LYS LEU LYS GLN VAL ALA ASP LYS LEU GLU GLU VAL SEQRES 2 E 34 ALA SER LYS LEU TYR HIS ASN ALA ASN GLU LEU ALA ARG SEQRES 3 E 34 VAL ALA LYS LEU LEU GLY GLU ARG SEQRES 1 F 34 MET LYS LEU LYS GLN VAL ALA ASP LYS LEU GLU GLU VAL SEQRES 2 F 34 ALA SER LYS LEU TYR HIS ASN ALA ASN GLU LEU ALA ARG SEQRES 3 F 34 VAL ALA LYS LEU LEU GLY GLU ARG SEQRES 1 G 34 MET LYS LEU LYS GLN VAL ALA ASP LYS LEU GLU GLU VAL SEQRES 2 G 34 ALA SER LYS LEU TYR HIS ASN ALA ASN GLU LEU ALA ARG SEQRES 3 G 34 VAL ALA LYS LEU LEU GLY GLU ARG SEQRES 1 H 34 MET LYS LEU LYS GLN VAL ALA ASP LYS LEU GLU GLU VAL SEQRES 2 H 34 ALA SER LYS LEU TYR HIS ASN ALA ASN GLU LEU ALA ARG SEQRES 3 H 34 VAL ALA LYS LEU LEU GLY GLU ARG
HET ZN C 35 1 HET ACT C 36 4 HET ZN D 35 1 HET ACT D 36 4 HET ACT D 37 4 HET CIT C 37 13 HET CIT D 38 13 HET CIT G 35 13 HET CIT G 36 13
HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM CIT CITRIC ACID
FORMUL 9 ZN 2(ZN 2+) FORMUL 10 ACT 3(C2 H3 O2 1-) FORMUL 14 CIT 4(C6 H8 O7) FORMUL 18 HOH *99(H2 O)
HELIX 1 1 LYS A 2 GLU A 33 1 32 HELIX 2 2 LYS B 2 GLU B 33 1 32 HELIX 3 3 LYS C 2 GLU C 33 1 32 HELIX 4 4 LYS D 2 GLU D 33 1 32 HELIX 5 5 LYS E 2 LEU E 31 1 30 HELIX 6 6 LEU F 3 GLU F 33 1 31 HELIX 7 7 LYS G 2 LEU G 31 1 30 HELIX 8 8 LEU H 3 GLU H 33 1 31
LINK NE2 HIS C 19 ZN ZN C 35 1555 1555 2.03 LINK OE2 GLU C 23 ZN ZN C 35 1555 1555 2.15 LINK NE2 HIS D 19 ZN ZN D 35 1555 1555 2.08 LINK OE2 GLU D 23 ZN ZN D 35 1555 1555 2.00 LINK ZN ZN C 35 O3 CIT C 37 1555 1555 2.05 LINK ZN ZN C 35 O7 CIT C 37 1555 1555 2.23 LINK ZN ZN C 35 O5 CIT C 37 1555 1555 2.17 LINK ZN ZN D 35 O5 CIT D 38 1555 1555 2.33 LINK ZN ZN D 35 O7 CIT D 38 1555 1555 2.28 LINK ZN ZN D 35 O3 CIT D 38 1555 1555 2.18 LINK ZN ZN C 35 O HOH G 44 1555 1555 2.21 LINK ZN ZN D 35 O HOH G 37 1555 1555 2.13
SITE 1 AC1 3 HIS C 19 GLU C 23 HOH G 44 SITE 1 AC2 3 HIS D 19 GLU D 23 HOH G 37 SITE 1 AC3 7 SER D 15 TYR D 18 HIS D 19 HOH D 40 SITE 2 AC3 7 ALA E 14 SER E 15 TYR E 18 SITE 1 AC4 6 SER C 15 HIS C 19 HOH C 40 ALA G 14 SITE 2 AC4 6 SER G 15 TYR G 18 SITE 1 AC5 1 ARG D 26 SITE 1 AC6 11 HIS C 19 ASN C 22 GLU C 23 HOH C 44 SITE 2 AC6 11 HOH C 50 HOH C 52 LYS D 9 HOH E 38 SITE 3 AC6 11 SER G 15 HIS G 19 HOH G 44 SITE 1 AC7 9 LYS C 9 HIS D 19 ASN D 22 GLU D 23 SITE 2 AC7 9 HOH D 45 HOH D 58 SER E 15 HIS E 19 SITE 3 AC7 9 HOH G 37 SITE 1 AC8 12 GLU D 12 LYS D 16 HOH D 50 ASN E 22 SITE 2 AC8 12 ARG E 26 TYR G 18 HIS G 19 ASN G 22 SITE 3 AC8 12 ARG G 26 HOH G 39 HOH G 44 HOH G 45 SITE 1 AC9 12 GLU C 12 LYS C 16 HOH C 49 TYR E 18 SITE 2 AC9 12 HIS E 19 ASN E 22 ARG E 26 ASN G 22 SITE 3 AC9 12 ARG G 26 HOH G 37 HOH G 41 HOH G 42
CRYST1 51.696 51.696 99.793 90.00 90.00 90.00 P 43 32
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019344 0.000000 0.000000 0.00000
SCALE2 0.000000 0.019344 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010021 0.00000