10 20 30 40 50 60 70 80 2R1N - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 23-AUG-07 2R1N
TITLE OPDA FROM AGROBACTERIUM RADIOBACTER WITH BOUND SLOW TITLE 2 SUBSTRATE DIETHYL 4-METHOXYPHENYL PHOSPHATE (20H)- 1.7 A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 33-360; COMPND 5 SYNONYM: PROTEIN OPDA; COMPND 6 EC: 3.1.8.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 358; SOURCE 4 GENE: OPDA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCY76
KEYWDS PHOSPHOTRIESTERASE, OPDA, METALLOENZYME, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.L.OLLIS,C.J.JACKSON,J.L.FOO,H.K.KIM,P.D.CARR,J.W.LIU, AUTHOR 2 G.SALEM
REVDAT 2 23-JUN-09 2R1N 1 MODRES REVDAT 1 12-FEB-08 2R1N 0
JRNL AUTH C.J.JACKSON,J.L.FOO,H.K.KIM,P.D.CARR,J.W.LIU, JRNL AUTH 2 G.SALEM,D.L.OLLIS JRNL TITL IN CRYSTALLO CAPTURE OF A MICHAELIS COMPLEX AND JRNL TITL 2 PRODUCT-BINDING MODES OF A BACTERIAL JRNL TITL 3 PHOSPHOTRIESTERASE JRNL REF J.MOL.BIOL. V. 375 1189 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18082180 JRNL DOI 10.1016/J.JMB.2007.10.061
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 42685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2160 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1993 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2527 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : -0.99000 REMARK 3 B33 (A**2) : 1.49000 REMARK 3 B12 (A**2) : -0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.552 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2597 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3525 ; 1.649 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.144 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;29.520 ;21.927 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;12.333 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;14.233 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1967 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1451 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1817 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 278 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.049 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.109 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1676 ; 1.165 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2629 ; 1.601 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1032 ; 2.830 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 896 ; 4.280 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2R1N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB044313.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC CONFOCAL MIRRORS REMARK 200 OPTICS : CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44867 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2D2J REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M SODIUM NITRATE, REMARK 280 PH7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.88300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.76600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.76600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.88300 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 81 O HOH A 991 2.09 REMARK 500 NH2 ARG A 337 O HOH A 904 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 225 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -145.26 -141.22 REMARK 500 TRP A 69 58.22 -145.82 REMARK 500 THR A 128 -165.96 -114.71 REMARK 500 TRP A 131 -152.83 -90.52 REMARK 500 GLU A 159 -127.84 57.37 REMARK 500 VAL A 351 -55.96 -120.33 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 800 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 110.2 REMARK 620 3 KCX A 169 OQ1 94.2 86.8 REMARK 620 4 ASP A 301 OD1 87.4 88.6 175.4 REMARK 620 5 HOH A1118 O 108.0 141.8 91.0 92.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 801 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ2 REMARK 620 2 HIS A 201 ND1 101.1 REMARK 620 3 HIS A 230 NE2 117.3 92.3 REMARK 620 4 HOH A1118 O 98.9 149.5 98.8 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 801 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPL A 701
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D2J RELATED DB: PDB REMARK 900 OPDA WITHOUT INHIBITOR/PRODUCT PRESENT REMARK 900 RELATED ID: 2D2H RELATED DB: PDB REMARK 900 OPDA WITH BOUND INHIBITOR TRIMETHYL PHOSPHATE REMARK 900 RELATED ID: 2D2G RELATED DB: PDB REMARK 900 OPDA WITH BOUND INHIBITOR DIMETHYL PHOSPHATE REMARK 900 RELATED ID: 2R1K RELATED DB: PDB REMARK 900 OPDA WITH BOUND DIETHYL PHOSPHATE FROM CRYSTAL SOAKING WITH REMARK 900 THE COMPOUND REMARK 900 RELATED ID: 2R1L RELATED DB: PDB REMARK 900 OPDA WITH BOUND DIETHYL THIOPHOSPHATE FROM CRYSTAL SOAKING REMARK 900 WITH THE COMPOUND REMARK 900 RELATED ID: 2R1M RELATED DB: PDB REMARK 900 OPDA WITH BOUND PRODUCT DIETHYL PHOSPHATE FROM CRYSTAL REMARK 900 SOAKING WITH DIETHYL 4-METHOXYPHENYL PHOSPHATE (450H) REMARK 900 RELATED ID: 2R1O RELATED DB: PDB REMARK 900 OPDA WITH BOUND DIETHYL THIOPHOSPHATE FROM CRYSTAL SOAKING REMARK 900 WITH TETRAETHYL DITHIOPYROPHOSPHATE REMARK 900 RELATED ID: 2R1P RELATED DB: PDB REMARK 900 OPDA WITH BOUND DIETHYL THIOPHOSPHATE FROM CO- REMARK 900 CRYSTALLISATION WITH TETRAETHYL DITHIOPYROPHOSPHATE
DBREF 2R1N A 34 361 UNP Q93LD7 Q93LD7_9RHIZ 33 360
SEQADV 2R1N ALA A 92 UNP Q93LD7 SER 91 ENGINEERED SEQADV 2R1N ASP A 265 UNP Q93LD7 ASN 264 ENGINEERED
SEQRES 1 A 328 GLY ASP LEU ILE ASN THR VAL ARG GLY PRO ILE PRO VAL SEQRES 2 A 328 SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS SEQRES 3 A 328 GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE SEQRES 4 A 328 PHE GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL ARG SEQRES 5 A 328 GLY LEU ARG HIS ALA ARG ALA ALA GLY VAL GLN THR ILE SEQRES 6 A 328 VAL ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL ARG SEQRES 7 A 328 LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE SEQRES 8 A 328 VAL ALA ALA THR GLY LEU TRP PHE ASP PRO PRO LEU SER SEQRES 9 A 328 MET ARG MET ARG SER VAL GLU GLU LEU THR GLN PHE PHE SEQRES 10 A 328 LEU ARG GLU ILE GLN HIS GLY ILE GLU ASP THR GLY ILE SEQRES 11 A 328 ARG ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS ALA SEQRES 12 A 328 THR PRO PHE GLN GLU LEU VAL LEU LYS ALA ALA ALA ARG SEQRES 13 A 328 ALA SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR SEQRES 14 A 328 SER ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE SEQRES 15 A 328 PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE SEQRES 16 A 328 GLY HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR SEQRES 17 A 328 GLY LEU ALA ALA ARG GLY TYR LEU VAL GLY LEU ASP ARG SEQRES 18 A 328 MET PRO TYR SER ALA ILE GLY LEU GLU GLY ASP ALA SER SEQRES 19 A 328 ALA LEU ALA LEU PHE GLY THR ARG SER TRP GLN THR ARG SEQRES 20 A 328 ALA LEU LEU ILE LYS ALA LEU ILE ASP ARG GLY TYR LYS SEQRES 21 A 328 ASP ARG ILE LEU VAL SER HIS ASP TRP LEU PHE GLY PHE SEQRES 22 A 328 SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP ARG SEQRES 23 A 328 ILE ASN PRO ASP GLY MET ALA PHE VAL PRO LEU ARG VAL SEQRES 24 A 328 ILE PRO PHE LEU ARG GLU LYS GLY VAL PRO PRO GLU THR SEQRES 25 A 328 LEU ALA GLY VAL THR VAL ALA ASN PRO ALA ARG PHE LEU SEQRES 26 A 328 SER PRO THR
MODRES 2R1N KCX A 169 LYS LYSINE NZ-CARBOXYLIC ACID
HET KCX A 169 12 HET FE2 A 800 1 HET CO A 801 1 HET EPL A 701 17
HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM FE2 FE (II) ION HETNAM CO COBALT (II) ION HETNAM EPL DIETHYL 4-METHOXYPHENYL PHOSPHATE
FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 FE2 FE 2+ FORMUL 3 CO CO 2+ FORMUL 4 EPL C11 H17 O5 P FORMUL 5 HOH *317(H2 O)
HELIX 1 1 SER A 47 ALA A 49 5 3 HELIX 2 2 GLY A 64 TRP A 69 1 6 HELIX 3 3 PRO A 70 GLY A 74 5 5 HELIX 4 4 SER A 75 ALA A 93 1 19 HELIX 5 5 THR A 103 GLY A 107 5 5 HELIX 6 6 ASP A 109 ASP A 121 1 13 HELIX 7 7 PRO A 135 MET A 140 1 6 HELIX 8 8 SER A 142 HIS A 156 1 15 HELIX 9 9 THR A 177 GLY A 195 1 19 HELIX 10 10 SER A 203 ARG A 207 5 5 HELIX 11 11 ASP A 208 GLU A 219 1 12 HELIX 12 12 SER A 222 SER A 224 5 3 HELIX 13 13 HIS A 230 THR A 234 5 5 HELIX 14 14 ASP A 236 ARG A 246 1 11 HELIX 15 15 ASP A 265 GLY A 273 1 9 HELIX 16 16 SER A 276 ARG A 290 1 15 HELIX 17 17 TYR A 292 ASP A 294 5 3 HELIX 18 18 ASN A 312 ASN A 321 1 10 HELIX 19 19 ASP A 323 MET A 325 5 3 HELIX 20 20 ALA A 326 ARG A 331 1 6 HELIX 21 21 ARG A 331 LYS A 339 1 9 HELIX 22 22 PRO A 342 VAL A 351 1 10 HELIX 23 23 VAL A 351 SER A 359 1 9
SHEET 1 A 2 LEU A 36 THR A 39 0 SHEET 2 A 2 GLY A 42 PRO A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 B 3 THR A 52 GLU A 56 0 SHEET 2 B 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 B 3 HIS A 123 VAL A 125 1 O VAL A 125 N ASP A 100 SHEET 1 C 2 CYS A 59 GLY A 60 0 SHEET 2 C 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 D 6 ALA A 127 GLY A 129 0 SHEET 2 D 6 ILE A 167 ALA A 171 1 O KCX A 169 N THR A 128 SHEET 3 D 6 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 4 D 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 D 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 D 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252
LINK NE2 HIS A 55 FE FE2 A 800 1555 1555 2.18 LINK NE2 HIS A 57 FE FE2 A 800 1555 1555 2.13 LINK OQ1 KCX A 169 FE FE2 A 800 1555 1555 2.13 LINK OQ2 KCX A 169 CO CO A 801 1555 1555 1.86 LINK ND1 HIS A 201 CO CO A 801 1555 1555 2.16 LINK NE2 HIS A 230 CO CO A 801 1555 1555 2.06 LINK OD1 ASP A 301 FE FE2 A 800 1555 1555 2.15 LINK FE FE2 A 800 O HOH A1118 1555 1555 1.91 LINK CO CO A 801 O HOH A1118 1555 1555 1.97 LINK C ILE A 168 N KCX A 169 1555 1555 1.38 LINK C KCX A 169 N VAL A 170 1555 1555 1.42
SITE 1 AC1 6 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC1 6 CO A 801 HOH A1118 SITE 1 AC2 6 KCX A 169 HIS A 201 HIS A 230 EPL A 701 SITE 2 AC2 6 FE2 A 800 HOH A1118 SITE 1 AC3 13 GLY A 60 TRP A 131 LEU A 136 MET A 140 SITE 2 AC3 13 HIS A 201 ARG A 254 TYR A 257 LEU A 271 SITE 3 AC3 13 ASP A 301 PHE A 306 SER A 308 CO A 801 SITE 4 AC3 13 HOH A1118
CRYST1 108.695 108.695 62.649 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009200 0.005312 0.000000 0.00000
SCALE2 0.000000 0.010623 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015962 0.00000