10 20 30 40 50 60 70 80 2R0V - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER TRANSCRIPTION 21-AUG-07 2R0V
TITLE STRUCTURE OF THE RSC4 TANDEM BROMODOMAIN ACETYLATED AT K25
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN COMPND 3 RSC4; COMPND 4 CHAIN: A, B, C; COMPND 5 FRAGMENT: RSC4 TBD (1-340); COMPND 6 SYNONYM: REMODEL THE STRUCTURE OF CHROMATIN COMPLEX COMPND 7 SUBUNIT 4; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RSC4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151-D/TOPO
KEYWDS BROMODOMAIN, CHROMATIN, REMODELER, RSC, HISTONE, KEYWDS 2 ACETYLATION, TRANSCRIPTION, CHROMATIN REGULATOR, NUCLEUS, KEYWDS 3 PHOSPHORYLATION, TRANSCRIPTION REGULATION
EXPDTA X-RAY DIFFRACTION
AUTHOR A.P.VANDEMARK,M.M.KASTEN,E.FERRIS,A.HEROUX,C.P.HILL, AUTHOR 2 B.R.CAIRNS
REVDAT 3 24-FEB-09 2R0V 1 VERSN REVDAT 2 05-FEB-08 2R0V 1 JRNL REVDAT 1 30-OCT-07 2R0V 0
JRNL AUTH A.P.VANDEMARK,M.M.KASTEN,E.FERRIS,A.HEROUX, JRNL AUTH 2 C.P.HILL,B.R.CAIRNS JRNL TITL AUTOREGULATION OF THE RSC4 TANDEM BROMODOMAIN BY JRNL TITL 2 GCN5 ACETYLATION. JRNL REF MOL.CELL V. 27 817 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17803945 JRNL DOI 10.1016/J.MOLCEL.2007.08.018
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 50522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2569 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7269 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -1.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.215 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7484 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10127 ; 1.283 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 870 ; 5.487 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 379 ;38.325 ;25.752 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1371 ;16.915 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.275 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1093 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5650 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3426 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5106 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 435 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4526 ; 0.550 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7168 ; 0.985 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3339 ; 1.612 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2959 ; 2.618 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2R0V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB044286.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50527 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.2M AMMONIUM SULFATE, REMARK 280 22% PEG 4000, PH 8.0, VAPOR DIFFUSION, TEMPERATURE 298K, PH REMARK 280 8.00
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.62300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.58450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.62300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.58450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE 3 BIOLOGICAL UNITS IN THE ASMMETRIC UNIT REMARK 300 (CHAIN A, CHAIN B, AND CHAIN C)
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 PHE A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 VAL A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 ASP A 16 REMARK 465 GLU A 17 REMARK 465 ARG A 18 REMARK 465 LYS A 312 REMARK 465 PHE A 313 REMARK 465 GLU A 314 REMARK 465 PHE A 315 REMARK 465 GLU A 316 REMARK 465 ASN A 317 REMARK 465 TYR A 318 REMARK 465 LEU A 319 REMARK 465 ALA A 320 REMARK 465 ILE A 321 REMARK 465 GLY A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 324 REMARK 465 GLY A 325 REMARK 465 PRO A 326 REMARK 465 ALA A 327 REMARK 465 ALA A 328 REMARK 465 ALA A 329 REMARK 465 GLY A 330 REMARK 465 ALA A 331 REMARK 465 LEU A 332 REMARK 465 ALA A 333 REMARK 465 ILE A 334 REMARK 465 SER A 335 REMARK 465 ALA A 336 REMARK 465 LEU A 337 REMARK 465 ASP A 338 REMARK 465 ASN A 339 REMARK 465 ASP A 340 REMARK 465 GLY B -5 REMARK 465 ILE B -4 REMARK 465 ASP B -3 REMARK 465 PRO B -2 REMARK 465 PHE B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 VAL B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 LEU B 8 REMARK 465 ALA B 9 REMARK 465 THR B 10 REMARK 465 GLU B 11 REMARK 465 ALA B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 ASP B 16 REMARK 465 GLU B 17 REMARK 465 ARG B 18 REMARK 465 PRO B 19 REMARK 465 LYS B 20 REMARK 465 TYR B 21 REMARK 465 LEU B 22 REMARK 465 GLU B 31 REMARK 465 LYS B 32 REMARK 465 ASP B 311 REMARK 465 LYS B 312 REMARK 465 PHE B 313 REMARK 465 GLU B 314 REMARK 465 PHE B 315 REMARK 465 GLU B 316 REMARK 465 ASN B 317 REMARK 465 TYR B 318 REMARK 465 LEU B 319 REMARK 465 ALA B 320 REMARK 465 ILE B 321 REMARK 465 GLY B 322 REMARK 465 GLY B 323 REMARK 465 GLY B 324 REMARK 465 GLY B 325 REMARK 465 PRO B 326 REMARK 465 ALA B 327 REMARK 465 ALA B 328 REMARK 465 ALA B 329 REMARK 465 GLY B 330 REMARK 465 ALA B 331 REMARK 465 LEU B 332 REMARK 465 ALA B 333 REMARK 465 ILE B 334 REMARK 465 SER B 335 REMARK 465 ALA B 336 REMARK 465 LEU B 337 REMARK 465 ASP B 338 REMARK 465 ASN B 339 REMARK 465 ASP B 340 REMARK 465 GLY C -5 REMARK 465 ILE C -4 REMARK 465 ASP C -3 REMARK 465 PRO C -2 REMARK 465 PHE C -1 REMARK 465 THR C 0 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 VAL C 3 REMARK 465 LYS C 4 REMARK 465 LYS C 5 REMARK 465 ARG C 6 REMARK 465 LYS C 7 REMARK 465 LEU C 8 REMARK 465 ALA C 9 REMARK 465 THR C 10 REMARK 465 GLU C 11 REMARK 465 ALA C 12 REMARK 465 GLY C 13 REMARK 465 GLY C 14 REMARK 465 SER C 15 REMARK 465 ASP C 16 REMARK 465 GLU C 17 REMARK 465 ARG C 18 REMARK 465 PRO C 19 REMARK 465 LYS C 20 REMARK 465 TYR C 21 REMARK 465 LEU C 22 REMARK 465 GLU C 314 REMARK 465 PHE C 315 REMARK 465 GLU C 316 REMARK 465 ASN C 317 REMARK 465 TYR C 318 REMARK 465 LEU C 319 REMARK 465 ALA C 320 REMARK 465 ILE C 321 REMARK 465 GLY C 322 REMARK 465 GLY C 323 REMARK 465 GLY C 324 REMARK 465 GLY C 325 REMARK 465 PRO C 326 REMARK 465 ALA C 327 REMARK 465 ALA C 328 REMARK 465 ALA C 329 REMARK 465 GLY C 330 REMARK 465 ALA C 331 REMARK 465 LEU C 332 REMARK 465 ALA C 333 REMARK 465 ILE C 334 REMARK 465 SER C 335 REMARK 465 ALA C 336 REMARK 465 LEU C 337 REMARK 465 ASP C 338 REMARK 465 ASN C 339 REMARK 465 ASP C 340
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 292 -56.15 -122.20 REMARK 500 PRO B 34 132.97 -27.51 REMARK 500 SER B 198 4.05 -69.67 REMARK 500 VAL B 217 143.16 -37.33 REMARK 500 ASN C 29 42.45 -74.47 REMARK 500 LYS C 201 -143.87 35.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 310 ASP A 311 132.82 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 341 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 342 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 343 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 341 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 342
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R0S RELATED DB: PDB REMARK 900 RELATED ID: 2R0Y RELATED DB: PDB REMARK 900 RELATED ID: 2R10 RELATED DB: PDB
DBREF 2R0V A 1 340 UNP Q02206 RSC4_YEAST 1 340 DBREF 2R0V B 1 340 UNP Q02206 RSC4_YEAST 1 340 DBREF 2R0V C 1 340 UNP Q02206 RSC4_YEAST 1 340
SEQADV 2R0V GLY A -5 UNP Q02206 EXPRESSION TAG SEQADV 2R0V ILE A -4 UNP Q02206 EXPRESSION TAG SEQADV 2R0V ASP A -3 UNP Q02206 EXPRESSION TAG SEQADV 2R0V PRO A -2 UNP Q02206 EXPRESSION TAG SEQADV 2R0V PHE A -1 UNP Q02206 EXPRESSION TAG SEQADV 2R0V THR A 0 UNP Q02206 EXPRESSION TAG SEQADV 2R0V GLY B -5 UNP Q02206 EXPRESSION TAG SEQADV 2R0V ILE B -4 UNP Q02206 EXPRESSION TAG SEQADV 2R0V ASP B -3 UNP Q02206 EXPRESSION TAG SEQADV 2R0V PRO B -2 UNP Q02206 EXPRESSION TAG SEQADV 2R0V PHE B -1 UNP Q02206 EXPRESSION TAG SEQADV 2R0V THR B 0 UNP Q02206 EXPRESSION TAG SEQADV 2R0V GLY C -5 UNP Q02206 EXPRESSION TAG SEQADV 2R0V ILE C -4 UNP Q02206 EXPRESSION TAG SEQADV 2R0V ASP C -3 UNP Q02206 EXPRESSION TAG SEQADV 2R0V PRO C -2 UNP Q02206 EXPRESSION TAG SEQADV 2R0V PHE C -1 UNP Q02206 EXPRESSION TAG SEQADV 2R0V THR C 0 UNP Q02206 EXPRESSION TAG
SEQRES 1 A 346 GLY ILE ASP PRO PHE THR MET VAL VAL LYS LYS ARG LYS SEQRES 2 A 346 LEU ALA THR GLU ALA GLY GLY SER ASP GLU ARG PRO LYS SEQRES 3 A 346 TYR LEU PRO GLY ALY HIS PRO LYS ASN GLN GLU LYS THR SEQRES 4 A 346 PRO HIS VAL ASP TYR ASN ALA PRO LEU ASN PRO LYS SER SEQRES 5 A 346 GLU LEU PHE LEU ASP ASP TRP HIS ILE PRO LYS PHE ASN SEQRES 6 A 346 ARG PHE ILE SER PHE THR LEU ASP VAL LEU ILE ASP LYS SEQRES 7 A 346 TYR LYS ASP ILE PHE LYS ASP PHE ILE LYS LEU PRO SER SEQRES 8 A 346 ARG LYS PHE HIS PRO GLN TYR TYR TYR LYS ILE GLN GLN SEQRES 9 A 346 PRO MET SER ILE ASN GLU ILE LYS SER ARG ASP TYR GLU SEQRES 10 A 346 TYR GLU ASP GLY PRO SER ASN PHE LEU LEU ASP VAL GLU SEQRES 11 A 346 LEU LEU THR LYS ASN CYS GLN ALA TYR ASN GLU TYR ASP SEQRES 12 A 346 SER LEU ILE VAL LYS ASN SER MET GLN VAL VAL MET LEU SEQRES 13 A 346 ILE GLU PHE GLU VAL LEU LYS ALA LYS ASN LEU LYS ARG SEQRES 14 A 346 ASN TYR LEU ILE ASN SER GLU VAL LYS ALA LYS LEU LEU SEQRES 15 A 346 HIS TYR LEU ASN LYS LEU VAL ASP ALA THR GLU LYS LYS SEQRES 16 A 346 ILE ASN GLN ALA LEU LEU GLY ALA SER SER PRO LYS ASN SEQRES 17 A 346 LEU ASP ASP LYS VAL LYS LEU SER GLU PRO PHE MET GLU SEQRES 18 A 346 LEU VAL ASP LYS ASP GLU LEU PRO GLU TYR TYR GLU ILE SEQRES 19 A 346 VAL HIS SER PRO MET ALA LEU SER ILE VAL LYS GLN ASN SEQRES 20 A 346 LEU GLU ILE GLY GLN TYR SER LYS ILE TYR ASP PHE ILE SEQRES 21 A 346 ILE ASP MET LEU LEU VAL PHE GLN ASN ALA HIS ILE PHE SEQRES 22 A 346 ASN ASP PRO SER ALA LEU ILE TYR LYS ASP ALA THR THR SEQRES 23 A 346 LEU THR ASN TYR PHE ASN TYR LEU ILE GLN LYS GLU PHE SEQRES 24 A 346 PHE PRO GLU LEU GLN ASP LEU ASN GLU ARG GLY GLU ILE SEQRES 25 A 346 ASN LEU GLU PHE ASP LYS PHE GLU PHE GLU ASN TYR LEU SEQRES 26 A 346 ALA ILE GLY GLY GLY GLY PRO ALA ALA ALA GLY ALA LEU SEQRES 27 A 346 ALA ILE SER ALA LEU ASP ASN ASP SEQRES 1 B 346 GLY ILE ASP PRO PHE THR MET VAL VAL LYS LYS ARG LYS SEQRES 2 B 346 LEU ALA THR GLU ALA GLY GLY SER ASP GLU ARG PRO LYS SEQRES 3 B 346 TYR LEU PRO GLY ALY HIS PRO LYS ASN GLN GLU LYS THR SEQRES 4 B 346 PRO HIS VAL ASP TYR ASN ALA PRO LEU ASN PRO LYS SER SEQRES 5 B 346 GLU LEU PHE LEU ASP ASP TRP HIS ILE PRO LYS PHE ASN SEQRES 6 B 346 ARG PHE ILE SER PHE THR LEU ASP VAL LEU ILE ASP LYS SEQRES 7 B 346 TYR LYS ASP ILE PHE LYS ASP PHE ILE LYS LEU PRO SER SEQRES 8 B 346 ARG LYS PHE HIS PRO GLN TYR TYR TYR LYS ILE GLN GLN SEQRES 9 B 346 PRO MET SER ILE ASN GLU ILE LYS SER ARG ASP TYR GLU SEQRES 10 B 346 TYR GLU ASP GLY PRO SER ASN PHE LEU LEU ASP VAL GLU SEQRES 11 B 346 LEU LEU THR LYS ASN CYS GLN ALA TYR ASN GLU TYR ASP SEQRES 12 B 346 SER LEU ILE VAL LYS ASN SER MET GLN VAL VAL MET LEU SEQRES 13 B 346 ILE GLU PHE GLU VAL LEU LYS ALA LYS ASN LEU LYS ARG SEQRES 14 B 346 ASN TYR LEU ILE ASN SER GLU VAL LYS ALA LYS LEU LEU SEQRES 15 B 346 HIS TYR LEU ASN LYS LEU VAL ASP ALA THR GLU LYS LYS SEQRES 16 B 346 ILE ASN GLN ALA LEU LEU GLY ALA SER SER PRO LYS ASN SEQRES 17 B 346 LEU ASP ASP LYS VAL LYS LEU SER GLU PRO PHE MET GLU SEQRES 18 B 346 LEU VAL ASP LYS ASP GLU LEU PRO GLU TYR TYR GLU ILE SEQRES 19 B 346 VAL HIS SER PRO MET ALA LEU SER ILE VAL LYS GLN ASN SEQRES 20 B 346 LEU GLU ILE GLY GLN TYR SER LYS ILE TYR ASP PHE ILE SEQRES 21 B 346 ILE ASP MET LEU LEU VAL PHE GLN ASN ALA HIS ILE PHE SEQRES 22 B 346 ASN ASP PRO SER ALA LEU ILE TYR LYS ASP ALA THR THR SEQRES 23 B 346 LEU THR ASN TYR PHE ASN TYR LEU ILE GLN LYS GLU PHE SEQRES 24 B 346 PHE PRO GLU LEU GLN ASP LEU ASN GLU ARG GLY GLU ILE SEQRES 25 B 346 ASN LEU GLU PHE ASP LYS PHE GLU PHE GLU ASN TYR LEU SEQRES 26 B 346 ALA ILE GLY GLY GLY GLY PRO ALA ALA ALA GLY ALA LEU SEQRES 27 B 346 ALA ILE SER ALA LEU ASP ASN ASP SEQRES 1 C 346 GLY ILE ASP PRO PHE THR MET VAL VAL LYS LYS ARG LYS SEQRES 2 C 346 LEU ALA THR GLU ALA GLY GLY SER ASP GLU ARG PRO LYS SEQRES 3 C 346 TYR LEU PRO GLY ALY HIS PRO LYS ASN GLN GLU LYS THR SEQRES 4 C 346 PRO HIS VAL ASP TYR ASN ALA PRO LEU ASN PRO LYS SER SEQRES 5 C 346 GLU LEU PHE LEU ASP ASP TRP HIS ILE PRO LYS PHE ASN SEQRES 6 C 346 ARG PHE ILE SER PHE THR LEU ASP VAL LEU ILE ASP LYS SEQRES 7 C 346 TYR LYS ASP ILE PHE LYS ASP PHE ILE LYS LEU PRO SER SEQRES 8 C 346 ARG LYS PHE HIS PRO GLN TYR TYR TYR LYS ILE GLN GLN SEQRES 9 C 346 PRO MET SER ILE ASN GLU ILE LYS SER ARG ASP TYR GLU SEQRES 10 C 346 TYR GLU ASP GLY PRO SER ASN PHE LEU LEU ASP VAL GLU SEQRES 11 C 346 LEU LEU THR LYS ASN CYS GLN ALA TYR ASN GLU TYR ASP SEQRES 12 C 346 SER LEU ILE VAL LYS ASN SER MET GLN VAL VAL MET LEU SEQRES 13 C 346 ILE GLU PHE GLU VAL LEU LYS ALA LYS ASN LEU LYS ARG SEQRES 14 C 346 ASN TYR LEU ILE ASN SER GLU VAL LYS ALA LYS LEU LEU SEQRES 15 C 346 HIS TYR LEU ASN LYS LEU VAL ASP ALA THR GLU LYS LYS SEQRES 16 C 346 ILE ASN GLN ALA LEU LEU GLY ALA SER SER PRO LYS ASN SEQRES 17 C 346 LEU ASP ASP LYS VAL LYS LEU SER GLU PRO PHE MET GLU SEQRES 18 C 346 LEU VAL ASP LYS ASP GLU LEU PRO GLU TYR TYR GLU ILE SEQRES 19 C 346 VAL HIS SER PRO MET ALA LEU SER ILE VAL LYS GLN ASN SEQRES 20 C 346 LEU GLU ILE GLY GLN TYR SER LYS ILE TYR ASP PHE ILE SEQRES 21 C 346 ILE ASP MET LEU LEU VAL PHE GLN ASN ALA HIS ILE PHE SEQRES 22 C 346 ASN ASP PRO SER ALA LEU ILE TYR LYS ASP ALA THR THR SEQRES 23 C 346 LEU THR ASN TYR PHE ASN TYR LEU ILE GLN LYS GLU PHE SEQRES 24 C 346 PHE PRO GLU LEU GLN ASP LEU ASN GLU ARG GLY GLU ILE SEQRES 25 C 346 ASN LEU GLU PHE ASP LYS PHE GLU PHE GLU ASN TYR LEU SEQRES 26 C 346 ALA ILE GLY GLY GLY GLY PRO ALA ALA ALA GLY ALA LEU SEQRES 27 C 346 ALA ILE SER ALA LEU ASP ASN ASP
MODRES 2R0V ALY A 25 LYS N(6)-ACETYLLYSINE MODRES 2R0V ALY B 25 LYS N(6)-ACETYLLYSINE MODRES 2R0V ALY C 25 LYS N(6)-ACETYLLYSINE
HET ALY A 25 12 HET ALY B 25 12 HET ALY C 25 12 HET SO4 A 341 5 HET SO4 A 342 5 HET SO4 A 343 5 HET SO4 C 341 5 HET SO4 C 342 5
HETNAM ALY N(6)-ACETYLLYSINE HETNAM SO4 SULFATE ION
FORMUL 1 ALY 3(C8 H16 N2 O3) FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *407(H2 O)
HELIX 1 1 SER A 46 ASP A 51 1 6 HELIX 2 2 LYS A 57 TYR A 73 1 17 HELIX 3 3 TYR A 73 LYS A 78 1 6 HELIX 4 4 ASP A 79 ILE A 81 5 3 HELIX 5 5 GLN A 91 ILE A 96 1 6 HELIX 6 6 SER A 101 SER A 107 1 7 HELIX 7 7 ASP A 114 ASN A 134 1 21 HELIX 8 8 SER A 138 ASN A 160 1 23 HELIX 9 9 LEU A 161 ASN A 164 5 4 HELIX 10 10 ASN A 168 ALA A 185 1 18 HELIX 11 11 THR A 186 GLY A 196 1 11 HELIX 12 12 ALA A 197 SER A 199 5 3 HELIX 13 13 SER A 210 MET A 214 5 5 HELIX 14 14 LEU A 222 VAL A 229 1 8 HELIX 15 15 ALA A 234 GLY A 245 1 12 HELIX 16 16 LYS A 249 ASN A 268 1 20 HELIX 17 17 ALA A 272 GLU A 292 1 21 HELIX 18 18 GLU A 292 ARG A 303 1 12 HELIX 19 19 SER B 46 ASP B 51 1 6 HELIX 20 20 LYS B 57 TYR B 73 1 17 HELIX 21 21 TYR B 73 LYS B 78 1 6 HELIX 22 22 ASP B 79 ILE B 81 5 3 HELIX 23 23 HIS B 89 TYR B 94 1 6 HELIX 24 24 SER B 101 SER B 107 1 7 HELIX 25 25 ASP B 114 ASN B 134 1 21 HELIX 26 26 SER B 138 ASN B 160 1 23 HELIX 27 27 LEU B 161 ASN B 164 5 4 HELIX 28 28 ASN B 168 ASP B 184 1 17 HELIX 29 29 THR B 186 GLY B 196 1 11 HELIX 30 30 SER B 210 MET B 214 5 5 HELIX 31 31 GLU B 224 VAL B 229 1 6 HELIX 32 32 ALA B 234 ILE B 244 1 11 HELIX 33 33 LYS B 249 ASN B 268 1 20 HELIX 34 34 ALA B 272 GLU B 292 1 21 HELIX 35 35 GLU B 292 GLU B 302 1 11 HELIX 36 36 SER C 46 ASP C 51 1 6 HELIX 37 37 LYS C 57 TYR C 73 1 17 HELIX 38 38 TYR C 73 LYS C 78 1 6 HELIX 39 39 ASP C 79 ILE C 81 5 3 HELIX 40 40 GLN C 91 ILE C 96 1 6 HELIX 41 41 SER C 101 LYS C 106 1 6 HELIX 42 42 ASP C 114 ASN C 134 1 21 HELIX 43 43 SER C 138 ASN C 160 1 23 HELIX 44 44 LEU C 161 ASN C 164 5 4 HELIX 45 45 ASN C 168 ASP C 184 1 17 HELIX 46 46 THR C 186 GLY C 196 1 11 HELIX 47 47 ALA C 197 SER C 199 5 3 HELIX 48 48 SER C 210 MET C 214 5 5 HELIX 49 49 LEU C 222 VAL C 229 1 8 HELIX 50 50 ALA C 234 ILE C 244 1 11 HELIX 51 51 LYS C 249 ASN C 268 1 20 HELIX 52 52 ALA C 272 LYS C 291 1 20 HELIX 53 53 GLU C 292 ARG C 303 1 12
LINK C GLY A 24 N ALY A 25 1555 1555 1.33 LINK C ALY A 25 N HIS A 26 1555 1555 1.33 LINK C GLY B 24 N ALY B 25 1555 1555 1.33 LINK C ALY B 25 N HIS B 26 1555 1555 1.33 LINK C GLY C 24 N ALY C 25 1555 1555 1.34 LINK C ALY C 25 N HIS C 26 1555 1555 1.34
SITE 1 AC1 6 HIS A 177 ASN A 180 ARG A 303 HOH A 399 SITE 2 AC1 6 HOH A 468 HOH B 455 SITE 1 AC2 2 HIS A 177 LYS A 181 SITE 1 AC3 7 GLU A 47 TYR A 251 ILE A 254 ASN A 286 SITE 2 AC3 7 ILE A 289 GLN A 290 HOH A 480 SITE 1 AC4 5 HIS C 89 PRO C 90 GLN C 91 TYR C 92 SITE 2 AC4 5 TYR C 133 SITE 1 AC5 2 ALY C 25 HIS C 89
CRYST1 123.246 83.169 127.059 90.00 109.27 90.00 C 1 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008114 0.000000 0.002837 0.00000
SCALE2 0.000000 0.012024 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008337 0.00000