10 20 30 40 50 60 70 80 2QVL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 08-AUG-07 2QVL
TITLE CRYSTAL STRUCTURE OF DIACYLGLYCEROL KINASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIACYLGLYCEROL KINASE DGKB; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.107; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 GENE: SAR1989; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: METHIONINE AUXOTROPH B834; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PAJ015
KEYWDS ALPHA-BETA DOMAIN 1, BETA SANDWICH DOMAIN 2, NATIVE PROTEIN, KEYWDS 2 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.J.MILLER,A.JERGA,C.O.ROCK,S.W.WHITE
REVDAT 3 24-FEB-09 2QVL 1 VERSN REVDAT 2 05-AUG-08 2QVL 1 JRNL REVDAT 1 17-JUN-08 2QVL 0
JRNL AUTH D.J.MILLER,A.JERGA,C.O.ROCK,S.W.WHITE JRNL TITL ANALYSIS OF THE STAPHYLOCOCCUS AUREUS DGKB JRNL TITL 2 STRUCTURE REVEALS A COMMON CATALYTIC MECHANISM FOR JRNL TITL 3 THE SOLUBLE DIACYLGLYCEROL KINASES. JRNL REF STRUCTURE V. 16 1036 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18611377 JRNL DOI 10.1016/J.STR.2008.03.019
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 14042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 730 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.389 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.462 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2210 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2986 ; 1.335 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 6.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;41.432 ;25.152 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;18.402 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.672 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1659 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 922 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1481 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.247 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1434 ; 1.111 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2241 ; 1.336 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 845 ; 2.269 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 745 ; 3.440 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2QVL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB044110.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI-220 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15472 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 26.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 0.1 M TRIS PH 8.5, 9% REMARK 280 PEG2KMME; WELL: 0.1 M TRIS PH 8.5, 18% PEG2KMME, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.10500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.25100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.10500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.25100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.10500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.10500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.25100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.10500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.10500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.25100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.50200
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 VAL A 145 REMARK 465 SER A 146 REMARK 465 TYR A 147 REMARK 465 GLU A 148 REMARK 465 THR A 149 REMARK 465 PRO A 150 REMARK 465 SER A 151 REMARK 465 LYS A 152 REMARK 465 LEU A 153 REMARK 465 LYS A 154 REMARK 465 SER A 155 REMARK 465 ILE A 156 REMARK 465 VAL A 157 REMARK 465 GLY A 158 REMARK 465 PRO A 159 REMARK 465 PHE A 160 REMARK 465 ALA A 161 REMARK 465 TYR A 162 REMARK 465 TYR A 163 REMARK 465 ILE A 164 REMARK 465 LYS A 165 REMARK 465 GLY A 166 REMARK 465 ALA A 203 REMARK 465 GLY A 204 REMARK 465 PHE A 205 REMARK 465 GLU A 206 REMARK 465 VAL A 308 REMARK 465 ASP A 309 REMARK 465 ASP A 310 REMARK 465 ASN A 311 REMARK 465 LEU A 312 REMARK 465 ILE A 313 REMARK 465 GLU A 314 REMARK 465 GLU A 315
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 MSE A 0 CG SE CE REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 LEU A 208 CG CD1 CD2 REMARK 470 GLN A 267 CG CD OE1 NE2 REMARK 470 ASN A 295 CG OD1 ND2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 ASP A 306 CG OD1 OD2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 12 41.28 -107.44 REMARK 500 ASP A 183 -121.60 56.16 REMARK 500 LEU A 198 -63.89 -99.74 REMARK 500 LEU A 208 148.18 -178.62 REMARK 500 ASP A 306 -8.90 -57.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 208 VAL A 209 140.40 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QV7 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ADP
DBREF 2QVL A 1 315 UNP Q6GFF9 Q6GFF9_STAAR 1 315
SEQADV 2QVL MSE A -21 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL GLY A -20 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL SER A -19 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL SER A -18 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL HIS A -17 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL HIS A -16 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL HIS A -15 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL HIS A -14 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL HIS A -13 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL HIS A -12 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL HIS A -11 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL SER A -10 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL SER A -9 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL GLY A -8 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL LEU A -7 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL VAL A -6 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL PRO A -5 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL ARG A -4 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL GLY A -3 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL SER A -2 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL HIS A -1 UNP Q6GFF9 EXPRESSION TAG SEQADV 2QVL MSE A 0 UNP Q6GFF9 EXPRESSION TAG
SEQRES 1 A 337 MSE GLY SER SER HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 337 GLY LEU VAL PRO ARG GLY SER HIS MSE MSE ARG LYS ARG SEQRES 3 A 337 ALA ARG ILE ILE TYR ASN PRO THR SER GLY LYS GLU GLN SEQRES 4 A 337 PHE LYS ARG GLU LEU PRO ASP ALA LEU ILE LYS LEU GLU SEQRES 5 A 337 LYS ALA GLY TYR GLU THR SER ALA TYR ALA THR GLU LYS SEQRES 6 A 337 ILE GLY ASP ALA THR LEU GLU ALA GLU ARG ALA MSE HIS SEQRES 7 A 337 GLU ASN TYR ASP VAL LEU ILE ALA ALA GLY GLY ASP GLY SEQRES 8 A 337 THR LEU ASN GLU VAL VAL ASN GLY ILE ALA GLU LYS PRO SEQRES 9 A 337 ASN ARG PRO LYS LEU GLY VAL ILE PRO MSE GLY THR VAL SEQRES 10 A 337 ASN ASP PHE GLY ARG ALA LEU HIS ILE PRO ASN ASP ILE SEQRES 11 A 337 MSE GLY ALA LEU ASP VAL ILE ILE GLU GLY HIS SER THR SEQRES 12 A 337 LYS VAL ASP ILE GLY LYS MSE ASN ASN ARG TYR PHE ILE SEQRES 13 A 337 ASN LEU ALA ALA GLY GLY GLN LEU THR GLN VAL SER TYR SEQRES 14 A 337 GLU THR PRO SER LYS LEU LYS SER ILE VAL GLY PRO PHE SEQRES 15 A 337 ALA TYR TYR ILE LYS GLY PHE GLU MSE LEU PRO GLN MSE SEQRES 16 A 337 LYS ALA VAL ASP LEU ARG ILE GLU TYR ASP GLY ASN VAL SEQRES 17 A 337 PHE GLN GLY GLU ALA LEU LEU PHE PHE LEU GLY LEU THR SEQRES 18 A 337 ASN SER MSE ALA GLY PHE GLU LYS LEU VAL PRO ASP ALA SEQRES 19 A 337 LYS LEU ASP ASP GLY TYR PHE THR LEU ILE ILE VAL GLU SEQRES 20 A 337 LYS SER ASN LEU ALA GLU LEU GLY HIS ILE MSE THR LEU SEQRES 21 A 337 ALA SER ARG GLY GLU HIS THR LYS HIS PRO LYS VAL ILE SEQRES 22 A 337 TYR GLU LYS ALA LYS ALA ILE ASN ILE SER SER PHE THR SEQRES 23 A 337 ASP LEU GLN LEU ASN VAL ASP GLY GLU TYR GLY GLY LYS SEQRES 24 A 337 LEU PRO ALA ASN PHE LEU ASN LEU GLU ARG HIS ILE ASP SEQRES 25 A 337 VAL PHE ALA PRO ASN ASP ILE VAL ASN GLU GLU LEU ILE SEQRES 26 A 337 ASN ASN ASP HIS VAL ASP ASP ASN LEU ILE GLU GLU
MODRES 2QVL MSE A 0 MET SELENOMETHIONINE MODRES 2QVL MSE A 1 MET SELENOMETHIONINE MODRES 2QVL MSE A 55 MET SELENOMETHIONINE MODRES 2QVL MSE A 92 MET SELENOMETHIONINE MODRES 2QVL MSE A 109 MET SELENOMETHIONINE MODRES 2QVL MSE A 128 MET SELENOMETHIONINE MODRES 2QVL MSE A 169 MET SELENOMETHIONINE MODRES 2QVL MSE A 173 MET SELENOMETHIONINE MODRES 2QVL MSE A 202 MET SELENOMETHIONINE MODRES 2QVL MSE A 236 MET SELENOMETHIONINE
HET MSE A 0 5 HET MSE A 1 8 HET MSE A 55 8 HET MSE A 92 8 HET MSE A 109 8 HET MSE A 128 8 HET MSE A 169 8 HET MSE A 173 8 HET MSE A 202 8 HET MSE A 236 8
HETNAM MSE SELENOMETHIONINE
FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 HOH *116(H2 O)
HELIX 1 1 GLN A 17 ALA A 32 1 16 HELIX 2 2 GLY A 45 MSE A 55 1 11 HELIX 3 3 GLY A 67 ALA A 79 1 13 HELIX 4 4 ASN A 96 LEU A 102 1 7 HELIX 5 5 ASP A 107 GLY A 118 1 12 HELIX 6 6 MSE A 169 MSE A 173 5 5 HELIX 7 7 ASN A 228 SER A 240 1 13 HELIX 8 8 ARG A 241 GLY A 242 5 2 HELIX 9 9 GLU A 243 HIS A 247 5 5
SHEET 1 A 4 TYR A 34 ALA A 40 0 SHEET 2 A 4 LYS A 3 TYR A 9 1 N LYS A 3 O GLU A 35 SHEET 3 A 4 VAL A 61 GLY A 66 1 O ILE A 63 N ILE A 8 SHEET 4 A 4 LYS A 86 PRO A 91 1 O GLY A 88 N LEU A 62 SHEET 1 B 8 ARG A 131 PHE A 133 0 SHEET 2 B 8 SER A 120 MSE A 128 -1 N GLY A 126 O PHE A 133 SHEET 3 B 8 ALA A 280 PHE A 292 -1 O LEU A 283 N LYS A 127 SHEET 4 B 8 ALA A 257 SER A 261 -1 N ILE A 260 O ALA A 280 SHEET 5 B 8 VAL A 176 TYR A 182 -1 N GLU A 181 O ASN A 259 SHEET 6 B 8 ASN A 185 GLY A 197 -1 O PHE A 187 N ILE A 180 SHEET 7 B 8 PHE A 219 GLU A 225 -1 O VAL A 224 N LEU A 192 SHEET 8 B 8 VAL A 250 ALA A 255 -1 O ILE A 251 N ILE A 223 SHEET 1 C 9 ARG A 131 PHE A 133 0 SHEET 2 C 9 SER A 120 MSE A 128 -1 N GLY A 126 O PHE A 133 SHEET 3 C 9 ALA A 280 PHE A 292 -1 O LEU A 283 N LYS A 127 SHEET 4 C 9 ALA A 257 SER A 261 -1 N ILE A 260 O ALA A 280 SHEET 5 C 9 VAL A 176 TYR A 182 -1 N GLU A 181 O ASN A 259 SHEET 6 C 9 ASN A 185 GLY A 197 -1 O PHE A 187 N ILE A 180 SHEET 7 C 9 LEU A 136 GLY A 140 -1 N ALA A 137 O LEU A 196 SHEET 8 C 9 GLN A 267 VAL A 270 -1 O ASN A 269 N ALA A 138 SHEET 9 C 9 GLU A 273 LYS A 277 -1 O GLU A 273 N VAL A 270
LINK C HIS A -1 N MSE A 0 1555 1555 1.33 LINK C MSE A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C ALA A 54 N MSE A 55 1555 1555 1.34 LINK C MSE A 55 N HIS A 56 1555 1555 1.33 LINK C PRO A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N GLY A 93 1555 1555 1.33 LINK C ILE A 108 N MSE A 109 1555 1555 1.34 LINK C MSE A 109 N GLY A 110 1555 1555 1.33 LINK C LYS A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N ASN A 129 1555 1555 1.33 LINK C GLU A 168 N MSE A 169 1555 1555 1.32 LINK C MSE A 169 N LEU A 170 1555 1555 1.33 LINK C GLN A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N LYS A 174 1555 1555 1.33 LINK C SER A 201 N MSE A 202 1555 1555 1.34 LINK C ILE A 235 N MSE A 236 1555 1555 1.34 LINK C MSE A 236 N THR A 237 1555 1555 1.33
CISPEP 1 LEU A 278 PRO A 279 0 -4.43
CRYST1 124.210 124.210 48.502 90.00 90.00 90.00 P 42 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008051 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008051 0.000000 0.00000
SCALE3 0.000000 0.000000 0.020618 0.00000