10 20 30 40 50 60 70 80 2QUM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 06-AUG-07 2QUM
TITLE CRYSTAL STRUCTURE OF D-TAGATOSE 3-EPIMERASE FROM TITLE 2 PSEUDOMONAS CICHORII WITH D-TAGATOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-TAGATOSE 3-EPIMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 5.3.1.-; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS CICHORII; SOURCE 3 ORGANISM_TAXID: 36746; SOURCE 4 STRAIN: ST-24; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A
KEYWDS BETA/ALPHA BARREL, ISOMERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR H.YOSHIDA,M.YAMADA,T.NISHITANI,G.TAKADA,K.IZUMORI,S.KAMITORI
REVDAT 2 24-FEB-09 2QUM 1 VERSN REVDAT 1 25-DEC-07 2QUM 0
JRNL AUTH H.YOSHIDA,M.YAMADA,T.NISHITANI,G.TAKADA,K.IZUMORI, JRNL AUTH 2 S.KAMITORI JRNL TITL CRYSTAL STRUCTURES OF D-TAGATOSE 3-EPIMERASE FROM JRNL TITL 2 PSEUDOMONAS CICHORII AND ITS COMPLEXES WITH JRNL TITL 3 D-TAGATOSE AND D-FRUCTOSE JRNL REF J.MOL.BIOL. V. 374 443 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17936787 JRNL DOI 10.1016/J.JMB.2007.09.033
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 37837.840 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 53686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5431 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7628 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 880 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9152 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 762 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.02000 REMARK 3 B22 (A**2) : -5.06000 REMARK 3 B33 (A**2) : 4.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.78 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 56.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : TAGATOSE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : TAGATOSE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2QUM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB044075.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55980 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OU4 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 0.1M HEPES, 0.1M TRI REMARK 280 -SODIUM CITRATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 69.71600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 160 -15.00 -144.85 REMARK 500 ASP A 176 71.55 41.11 REMARK 500 ASP B 74 106.32 -58.86 REMARK 500 ASP B 120 60.04 -101.65 REMARK 500 TRP B 160 -6.86 -145.02 REMARK 500 GLU B 214 -179.14 -68.29 REMARK 500 ASP C 74 103.96 -57.00 REMARK 500 ASP C 120 41.33 -84.50 REMARK 500 ASP D 74 98.71 -45.18 REMARK 500 TRP D 160 -10.30 -143.76 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 292 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE2 REMARK 620 2 ASP A 185 OD2 98.9 REMARK 620 3 HIS A 211 ND1 111.0 105.8 REMARK 620 4 GLU A 246 OE1 162.4 78.9 86.3 REMARK 620 5 TAG A 291 O2 91.3 94.0 146.9 71.6 REMARK 620 6 TAG A 291 O3 70.7 158.4 95.7 105.2 68.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 292 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 152 OE2 REMARK 620 2 ASP B 185 OD2 102.8 REMARK 620 3 HIS B 211 ND1 104.2 110.3 REMARK 620 4 GLU B 246 OE1 166.6 83.5 84.2 REMARK 620 5 TAG B 291 O2 98.1 88.7 146.1 69.9 REMARK 620 6 TAG B 291 O3 69.0 156.9 92.7 100.6 71.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 292 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 152 OE2 REMARK 620 2 ASP C 185 OD2 102.9 REMARK 620 3 HIS C 211 ND1 103.4 111.8 REMARK 620 4 GLU C 246 OE1 166.2 90.4 74.1 REMARK 620 5 TAG C 291 O2 96.0 95.4 141.5 79.2 REMARK 620 6 TAG C 291 O3 70.5 161.2 87.0 95.7 68.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 292 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 152 OE2 REMARK 620 2 ASP D 185 OD2 91.5 REMARK 620 3 HIS D 211 ND1 101.7 115.5 REMARK 620 4 GLU D 246 OE1 168.9 89.2 88.0 REMARK 620 5 TAG D 291 O2 99.9 96.6 140.4 69.0 REMARK 620 6 TAG D 291 O3 73.8 154.7 88.1 101.4 66.7 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAG A 291 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAG B 291 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAG C 291 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAG D 291 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 292 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 292 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 292 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 292
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QUL RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT SUBSTRATE REMARK 900 RELATED ID: 2QUN RELATED DB: PDB
DBREF 2QUM A 1 290 UNP O50580 DT3E_PSECI 1 290 DBREF 2QUM B 1 290 UNP O50580 DT3E_PSECI 1 290 DBREF 2QUM C 1 290 UNP O50580 DT3E_PSECI 1 290 DBREF 2QUM D 1 290 UNP O50580 DT3E_PSECI 1 290
SEQRES 1 A 290 MET ASN LYS VAL GLY MET PHE TYR THR TYR TRP SER THR SEQRES 2 A 290 GLU TRP MET VAL ASP PHE PRO ALA THR ALA LYS ARG ILE SEQRES 3 A 290 ALA GLY LEU GLY PHE ASP LEU MET GLU ILE SER LEU GLY SEQRES 4 A 290 GLU PHE HIS ASN LEU SER ASP ALA LYS LYS ARG GLU LEU SEQRES 5 A 290 LYS ALA VAL ALA ASP ASP LEU GLY LEU THR VAL MET CYS SEQRES 6 A 290 CYS ILE GLY LEU LYS SER GLU TYR ASP PHE ALA SER PRO SEQRES 7 A 290 ASP LYS SER VAL ARG ASP ALA GLY THR GLU TYR VAL LYS SEQRES 8 A 290 ARG LEU LEU ASP ASP CYS HIS LEU LEU GLY ALA PRO VAL SEQRES 9 A 290 PHE ALA GLY LEU THR PHE CYS ALA TRP PRO GLN SER PRO SEQRES 10 A 290 PRO LEU ASP MET LYS ASP LYS ARG PRO TYR VAL ASP ARG SEQRES 11 A 290 ALA ILE GLU SER VAL ARG ARG VAL ILE LYS VAL ALA GLU SEQRES 12 A 290 ASP TYR GLY ILE ILE TYR ALA LEU GLU VAL VAL ASN ARG SEQRES 13 A 290 PHE GLU GLN TRP LEU CYS ASN ASP ALA LYS GLU ALA ILE SEQRES 14 A 290 ALA PHE ALA ASP ALA VAL ASP SER PRO ALA CYS LYS VAL SEQRES 15 A 290 GLN LEU ASP THR PHE HIS MET ASN ILE GLU GLU THR SER SEQRES 16 A 290 PHE ARG ASP ALA ILE LEU ALA CYS LYS GLY LYS MET GLY SEQRES 17 A 290 HIS PHE HIS LEU GLY GLU ALA ASN ARG LEU PRO PRO GLY SEQRES 18 A 290 GLU GLY ARG LEU PRO TRP ASP GLU ILE PHE GLY ALA LEU SEQRES 19 A 290 LYS GLU ILE GLY TYR ASP GLY THR ILE VAL MET GLU PRO SEQRES 20 A 290 PHE MET ARG LYS GLY GLY SER VAL SER ARG ALA VAL GLY SEQRES 21 A 290 VAL TRP ARG ASP MET SER ASN GLY ALA THR ASP GLU GLU SEQRES 22 A 290 MET ASP GLU ARG ALA ARG ARG SER LEU GLN PHE VAL ARG SEQRES 23 A 290 ASP LYS LEU ALA SEQRES 1 B 290 MET ASN LYS VAL GLY MET PHE TYR THR TYR TRP SER THR SEQRES 2 B 290 GLU TRP MET VAL ASP PHE PRO ALA THR ALA LYS ARG ILE SEQRES 3 B 290 ALA GLY LEU GLY PHE ASP LEU MET GLU ILE SER LEU GLY SEQRES 4 B 290 GLU PHE HIS ASN LEU SER ASP ALA LYS LYS ARG GLU LEU SEQRES 5 B 290 LYS ALA VAL ALA ASP ASP LEU GLY LEU THR VAL MET CYS SEQRES 6 B 290 CYS ILE GLY LEU LYS SER GLU TYR ASP PHE ALA SER PRO SEQRES 7 B 290 ASP LYS SER VAL ARG ASP ALA GLY THR GLU TYR VAL LYS SEQRES 8 B 290 ARG LEU LEU ASP ASP CYS HIS LEU LEU GLY ALA PRO VAL SEQRES 9 B 290 PHE ALA GLY LEU THR PHE CYS ALA TRP PRO GLN SER PRO SEQRES 10 B 290 PRO LEU ASP MET LYS ASP LYS ARG PRO TYR VAL ASP ARG SEQRES 11 B 290 ALA ILE GLU SER VAL ARG ARG VAL ILE LYS VAL ALA GLU SEQRES 12 B 290 ASP TYR GLY ILE ILE TYR ALA LEU GLU VAL VAL ASN ARG SEQRES 13 B 290 PHE GLU GLN TRP LEU CYS ASN ASP ALA LYS GLU ALA ILE SEQRES 14 B 290 ALA PHE ALA ASP ALA VAL ASP SER PRO ALA CYS LYS VAL SEQRES 15 B 290 GLN LEU ASP THR PHE HIS MET ASN ILE GLU GLU THR SER SEQRES 16 B 290 PHE ARG ASP ALA ILE LEU ALA CYS LYS GLY LYS MET GLY SEQRES 17 B 290 HIS PHE HIS LEU GLY GLU ALA ASN ARG LEU PRO PRO GLY SEQRES 18 B 290 GLU GLY ARG LEU PRO TRP ASP GLU ILE PHE GLY ALA LEU SEQRES 19 B 290 LYS GLU ILE GLY TYR ASP GLY THR ILE VAL MET GLU PRO SEQRES 20 B 290 PHE MET ARG LYS GLY GLY SER VAL SER ARG ALA VAL GLY SEQRES 21 B 290 VAL TRP ARG ASP MET SER ASN GLY ALA THR ASP GLU GLU SEQRES 22 B 290 MET ASP GLU ARG ALA ARG ARG SER LEU GLN PHE VAL ARG SEQRES 23 B 290 ASP LYS LEU ALA SEQRES 1 C 290 MET ASN LYS VAL GLY MET PHE TYR THR TYR TRP SER THR SEQRES 2 C 290 GLU TRP MET VAL ASP PHE PRO ALA THR ALA LYS ARG ILE SEQRES 3 C 290 ALA GLY LEU GLY PHE ASP LEU MET GLU ILE SER LEU GLY SEQRES 4 C 290 GLU PHE HIS ASN LEU SER ASP ALA LYS LYS ARG GLU LEU SEQRES 5 C 290 LYS ALA VAL ALA ASP ASP LEU GLY LEU THR VAL MET CYS SEQRES 6 C 290 CYS ILE GLY LEU LYS SER GLU TYR ASP PHE ALA SER PRO SEQRES 7 C 290 ASP LYS SER VAL ARG ASP ALA GLY THR GLU TYR VAL LYS SEQRES 8 C 290 ARG LEU LEU ASP ASP CYS HIS LEU LEU GLY ALA PRO VAL SEQRES 9 C 290 PHE ALA GLY LEU THR PHE CYS ALA TRP PRO GLN SER PRO SEQRES 10 C 290 PRO LEU ASP MET LYS ASP LYS ARG PRO TYR VAL ASP ARG SEQRES 11 C 290 ALA ILE GLU SER VAL ARG ARG VAL ILE LYS VAL ALA GLU SEQRES 12 C 290 ASP TYR GLY ILE ILE TYR ALA LEU GLU VAL VAL ASN ARG SEQRES 13 C 290 PHE GLU GLN TRP LEU CYS ASN ASP ALA LYS GLU ALA ILE SEQRES 14 C 290 ALA PHE ALA ASP ALA VAL ASP SER PRO ALA CYS LYS VAL SEQRES 15 C 290 GLN LEU ASP THR PHE HIS MET ASN ILE GLU GLU THR SER SEQRES 16 C 290 PHE ARG ASP ALA ILE LEU ALA CYS LYS GLY LYS MET GLY SEQRES 17 C 290 HIS PHE HIS LEU GLY GLU ALA ASN ARG LEU PRO PRO GLY SEQRES 18 C 290 GLU GLY ARG LEU PRO TRP ASP GLU ILE PHE GLY ALA LEU SEQRES 19 C 290 LYS GLU ILE GLY TYR ASP GLY THR ILE VAL MET GLU PRO SEQRES 20 C 290 PHE MET ARG LYS GLY GLY SER VAL SER ARG ALA VAL GLY SEQRES 21 C 290 VAL TRP ARG ASP MET SER ASN GLY ALA THR ASP GLU GLU SEQRES 22 C 290 MET ASP GLU ARG ALA ARG ARG SER LEU GLN PHE VAL ARG SEQRES 23 C 290 ASP LYS LEU ALA SEQRES 1 D 290 MET ASN LYS VAL GLY MET PHE TYR THR TYR TRP SER THR SEQRES 2 D 290 GLU TRP MET VAL ASP PHE PRO ALA THR ALA LYS ARG ILE SEQRES 3 D 290 ALA GLY LEU GLY PHE ASP LEU MET GLU ILE SER LEU GLY SEQRES 4 D 290 GLU PHE HIS ASN LEU SER ASP ALA LYS LYS ARG GLU LEU SEQRES 5 D 290 LYS ALA VAL ALA ASP ASP LEU GLY LEU THR VAL MET CYS SEQRES 6 D 290 CYS ILE GLY LEU LYS SER GLU TYR ASP PHE ALA SER PRO SEQRES 7 D 290 ASP LYS SER VAL ARG ASP ALA GLY THR GLU TYR VAL LYS SEQRES 8 D 290 ARG LEU LEU ASP ASP CYS HIS LEU LEU GLY ALA PRO VAL SEQRES 9 D 290 PHE ALA GLY LEU THR PHE CYS ALA TRP PRO GLN SER PRO SEQRES 10 D 290 PRO LEU ASP MET LYS ASP LYS ARG PRO TYR VAL ASP ARG SEQRES 11 D 290 ALA ILE GLU SER VAL ARG ARG VAL ILE LYS VAL ALA GLU SEQRES 12 D 290 ASP TYR GLY ILE ILE TYR ALA LEU GLU VAL VAL ASN ARG SEQRES 13 D 290 PHE GLU GLN TRP LEU CYS ASN ASP ALA LYS GLU ALA ILE SEQRES 14 D 290 ALA PHE ALA ASP ALA VAL ASP SER PRO ALA CYS LYS VAL SEQRES 15 D 290 GLN LEU ASP THR PHE HIS MET ASN ILE GLU GLU THR SER SEQRES 16 D 290 PHE ARG ASP ALA ILE LEU ALA CYS LYS GLY LYS MET GLY SEQRES 17 D 290 HIS PHE HIS LEU GLY GLU ALA ASN ARG LEU PRO PRO GLY SEQRES 18 D 290 GLU GLY ARG LEU PRO TRP ASP GLU ILE PHE GLY ALA LEU SEQRES 19 D 290 LYS GLU ILE GLY TYR ASP GLY THR ILE VAL MET GLU PRO SEQRES 20 D 290 PHE MET ARG LYS GLY GLY SER VAL SER ARG ALA VAL GLY SEQRES 21 D 290 VAL TRP ARG ASP MET SER ASN GLY ALA THR ASP GLU GLU SEQRES 22 D 290 MET ASP GLU ARG ALA ARG ARG SER LEU GLN PHE VAL ARG SEQRES 23 D 290 ASP LYS LEU ALA
HET TAG A 291 12 HET TAG B 291 12 HET TAG C 291 12 HET TAG D 291 12 HET MN A 292 1 HET MN B 292 1 HET MN C 292 1 HET MN D 292 1
HETNAM TAG D-TAGATOSE HETNAM MN MANGANESE (II) ION
FORMUL 5 TAG 4(C6 H12 O6) FORMUL 9 MN 4(MN 2+) FORMUL 13 HOH *762(H2 O)
HELIX 1 1 ASP A 18 LEU A 29 1 12 HELIX 2 2 LEU A 38 HIS A 42 1 5 HELIX 3 3 SER A 45 GLY A 60 1 16 HELIX 4 4 LYS A 70 ASP A 74 5 5 HELIX 5 5 ASP A 79 GLY A 101 1 23 HELIX 6 6 LYS A 124 ARG A 137 1 14 HELIX 7 7 VAL A 138 GLY A 146 1 9 HELIX 8 8 ASP A 164 ASP A 176 1 13 HELIX 9 9 THR A 186 GLU A 193 1 8 HELIX 10 10 SER A 195 ALA A 202 1 8 HELIX 11 11 PRO A 226 ILE A 237 1 12 HELIX 12 12 GLY A 253 VAL A 259 1 7 HELIX 13 13 THR A 270 ALA A 290 1 21 HELIX 14 14 ASP B 18 LEU B 29 1 12 HELIX 15 15 GLU B 40 LEU B 44 5 5 HELIX 16 16 SER B 45 GLY B 60 1 16 HELIX 17 17 LYS B 70 ASP B 74 5 5 HELIX 18 18 ASP B 79 GLY B 101 1 23 HELIX 19 19 LYS B 124 GLY B 146 1 23 HELIX 20 20 ASP B 164 ASP B 176 1 13 HELIX 21 21 THR B 186 GLU B 193 1 8 HELIX 22 22 SER B 195 CYS B 203 1 9 HELIX 23 23 PRO B 226 ILE B 237 1 12 HELIX 24 24 GLY B 253 GLY B 260 1 8 HELIX 25 25 THR B 270 ALA B 290 1 21 HELIX 26 26 ASP C 18 LEU C 29 1 12 HELIX 27 27 GLU C 40 LEU C 44 5 5 HELIX 28 28 SER C 45 LEU C 59 1 15 HELIX 29 29 LYS C 70 ASP C 74 5 5 HELIX 30 30 ASP C 79 GLY C 101 1 23 HELIX 31 31 LYS C 124 GLY C 146 1 23 HELIX 32 32 ASP C 164 ASP C 176 1 13 HELIX 33 33 THR C 186 GLU C 193 1 8 HELIX 34 34 SER C 195 CYS C 203 1 9 HELIX 35 35 PRO C 226 ILE C 237 1 12 HELIX 36 36 GLY C 253 GLY C 260 1 8 HELIX 37 37 THR C 270 ALA C 290 1 21 HELIX 38 38 ASP D 18 LEU D 29 1 12 HELIX 39 39 LEU D 38 HIS D 42 1 5 HELIX 40 40 SER D 45 GLY D 60 1 16 HELIX 41 41 LYS D 70 ASP D 74 5 5 HELIX 42 42 ASP D 79 LEU D 100 1 22 HELIX 43 43 LYS D 124 ARG D 137 1 14 HELIX 44 44 VAL D 138 GLY D 146 1 9 HELIX 45 45 ASP D 164 ASP D 176 1 13 HELIX 46 46 THR D 186 GLU D 193 1 8 HELIX 47 47 SER D 195 CYS D 203 1 9 HELIX 48 48 PRO D 226 ILE D 237 1 12 HELIX 49 49 GLY D 253 VAL D 259 1 7 HELIX 50 50 THR D 270 ALA D 290 1 21
SHEET 1 A 9 VAL A 4 PHE A 7 0 SHEET 2 A 9 LEU A 33 SER A 37 1 O GLU A 35 N MET A 6 SHEET 3 A 9 THR A 62 LEU A 69 1 O MET A 64 N ILE A 36 SHEET 4 A 9 VAL A 104 ALA A 112 1 O ALA A 106 N CYS A 65 SHEET 5 A 9 ILE A 148 GLU A 152 1 O ILE A 148 N PHE A 105 SHEET 6 A 9 CYS A 180 ASP A 185 1 O GLN A 183 N LEU A 151 SHEET 7 A 9 MET A 207 LEU A 212 1 O GLY A 208 N VAL A 182 SHEET 8 A 9 ILE A 243 MET A 245 1 O VAL A 244 N PHE A 210 SHEET 9 A 9 VAL A 4 PHE A 7 1 N GLY A 5 O ILE A 243 SHEET 1 B 9 VAL B 4 PHE B 7 0 SHEET 2 B 9 LEU B 33 SER B 37 1 O LEU B 33 N MET B 6 SHEET 3 B 9 THR B 62 LEU B 69 1 O MET B 64 N MET B 34 SHEET 4 B 9 VAL B 104 ALA B 112 1 O ALA B 106 N CYS B 65 SHEET 5 B 9 ILE B 148 GLU B 152 1 O ILE B 148 N PHE B 105 SHEET 6 B 9 CYS B 180 ASP B 185 1 O GLN B 183 N LEU B 151 SHEET 7 B 9 MET B 207 LEU B 212 1 O GLY B 208 N VAL B 182 SHEET 8 B 9 ILE B 243 MET B 245 1 O VAL B 244 N PHE B 210 SHEET 9 B 9 VAL B 4 PHE B 7 1 N GLY B 5 O ILE B 243 SHEET 1 C 9 VAL C 4 PHE C 7 0 SHEET 2 C 9 LEU C 33 SER C 37 1 O LEU C 33 N MET C 6 SHEET 3 C 9 THR C 62 LEU C 69 1 O THR C 62 N MET C 34 SHEET 4 C 9 VAL C 104 ALA C 112 1 O ALA C 106 N CYS C 65 SHEET 5 C 9 ILE C 148 GLU C 152 1 O ILE C 148 N PHE C 105 SHEET 6 C 9 CYS C 180 ASP C 185 1 O GLN C 183 N LEU C 151 SHEET 7 C 9 MET C 207 LEU C 212 1 O GLY C 208 N VAL C 182 SHEET 8 C 9 THR C 242 MET C 245 1 O VAL C 244 N PHE C 210 SHEET 9 C 9 VAL C 4 PHE C 7 1 N GLY C 5 O ILE C 243 SHEET 1 D 9 VAL D 4 PHE D 7 0 SHEET 2 D 9 LEU D 33 SER D 37 1 O LEU D 33 N MET D 6 SHEET 3 D 9 THR D 62 LEU D 69 1 O MET D 64 N MET D 34 SHEET 4 D 9 VAL D 104 ALA D 112 1 O ALA D 106 N CYS D 65 SHEET 5 D 9 ILE D 148 GLU D 152 1 O ILE D 148 N PHE D 105 SHEET 6 D 9 CYS D 180 ASP D 185 1 O GLN D 183 N LEU D 151 SHEET 7 D 9 MET D 207 LEU D 212 1 O GLY D 208 N VAL D 182 SHEET 8 D 9 ILE D 243 MET D 245 1 O VAL D 244 N PHE D 210 SHEET 9 D 9 VAL D 4 PHE D 7 1 N GLY D 5 O ILE D 243
LINK OE2 GLU A 152 MN MN A 292 1555 1555 2.32 LINK OD2 ASP A 185 MN MN A 292 1555 1555 2.29 LINK ND1 HIS A 211 MN MN A 292 1555 1555 2.27 LINK OE1 GLU A 246 MN MN A 292 1555 1555 2.59 LINK OE2 GLU B 152 MN MN B 292 1555 1555 2.25 LINK OD2 ASP B 185 MN MN B 292 1555 1555 2.29 LINK ND1 HIS B 211 MN MN B 292 1555 1555 2.16 LINK OE1 GLU B 246 MN MN B 292 1555 1555 2.43 LINK OE2 GLU C 152 MN MN C 292 1555 1555 2.16 LINK OD2 ASP C 185 MN MN C 292 1555 1555 2.06 LINK ND1 HIS C 211 MN MN C 292 1555 1555 2.28 LINK OE1 GLU C 246 MN MN C 292 1555 1555 2.46 LINK OE2 GLU D 152 MN MN D 292 1555 1555 2.37 LINK OD2 ASP D 185 MN MN D 292 1555 1555 2.10 LINK ND1 HIS D 211 MN MN D 292 1555 1555 2.34 LINK OE1 GLU D 246 MN MN D 292 1555 1555 2.39 LINK O2 TAG A 291 MN MN A 292 1555 1555 2.33 LINK O3 TAG A 291 MN MN A 292 1555 1555 3.00 LINK O2 TAG B 291 MN MN B 292 1555 1555 2.37 LINK O3 TAG B 291 MN MN B 292 1555 1555 2.83 LINK O2 TAG C 291 MN MN C 292 1555 1555 2.19 LINK O3 TAG C 291 MN MN C 292 1555 1555 3.14 LINK O2 TAG D 291 MN MN D 292 1555 1555 2.24 LINK O3 TAG D 291 MN MN D 292 1555 1555 3.00
CISPEP 1 TRP A 113 PRO A 114 0 -0.45 CISPEP 2 TRP B 113 PRO B 114 0 -0.14 CISPEP 3 TRP C 113 PRO C 114 0 -0.19 CISPEP 4 TRP D 113 PRO D 114 0 -0.57
SITE 1 AC1 10 PHE A 7 CYS A 66 TRP A 113 GLU A 152 SITE 2 AC1 10 GLU A 158 ASP A 185 HIS A 188 ARG A 217 SITE 3 AC1 10 GLU A 246 MN A 292 SITE 1 AC2 13 PHE B 7 CYS B 66 ILE B 67 TRP B 113 SITE 2 AC2 13 GLU B 152 GLU B 158 ASP B 185 HIS B 188 SITE 3 AC2 13 HIS B 211 ARG B 217 GLU B 246 MN B 292 SITE 4 AC2 13 HOH B 458 SITE 1 AC3 11 PHE C 7 CYS C 66 ILE C 67 GLU C 152 SITE 2 AC3 11 GLU C 158 ASP C 185 HIS C 188 HIS C 211 SITE 3 AC3 11 ARG C 217 GLU C 246 MN C 292 SITE 1 AC4 12 PHE D 7 CYS D 66 TRP D 113 GLU D 152 SITE 2 AC4 12 GLU D 158 ASP D 185 HIS D 188 HIS D 211 SITE 3 AC4 12 ARG D 217 GLU D 246 MN D 292 HOH D 306 SITE 1 AC5 5 GLU A 152 ASP A 185 HIS A 211 GLU A 246 SITE 2 AC5 5 TAG A 291 SITE 1 AC6 5 GLU B 152 ASP B 185 HIS B 211 GLU B 246 SITE 2 AC6 5 TAG B 291 SITE 1 AC7 5 GLU C 152 ASP C 185 HIS C 211 GLU C 246 SITE 2 AC7 5 TAG C 291 SITE 1 AC8 5 GLU D 152 ASP D 185 HIS D 211 GLU D 246 SITE 2 AC8 5 TAG D 291
CRYST1 49.414 139.432 92.860 90.00 104.04 90.00 P 1 21 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020237 0.000000 0.005060 0.00000
SCALE2 0.000000 0.007172 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011100 0.00000