2QQC - Header Asymmetric Unit

HEADER LYASE 26-JUL-07 2QQC

TITLE E109Q MUTANT OF PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE TITLE 2 FROM METHANOCOCCUS JANNASHII

COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE (EC COMPND 3 4.1.1.19) (PVLARGDC); COMPND 4 CHAIN: A, C, E, G, I, K; COMPND 5 FRAGMENT: BETA SUBUNIT; COMPND 6 EC: 4.1.1.19; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE (EC COMPND 10 4.1.1.19) (PVLARGDC); COMPND 11 CHAIN: B, D, F, H, J, L; COMPND 12 FRAGMENT: ALPHA SUBUNIT; COMPND 13 EC: 4.1.1.19; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: PDAD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 9 ORGANISM_TAXID: 2190; SOURCE 10 GENE: PDAD; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562

KEYWDS ARGININE DECARBOXYLASE, PYRUVOYL, DECARBOXYLATION, KEYWDS 2 AUTOPROCESSING, SERINOLYSIS, LYASE, PYRUVATE

EXPDTA X-RAY DIFFRACTION

AUTHOR S.E.EALICK,E.S.SORIANO

REVDAT 4 24-FEB-09 2QQC 1 VERSN REVDAT 3 01-APR-08 2QQC 1 JRNL REVDAT 2 25-MAR-08 2QQC 1 JRNL REVDAT 1 18-MAR-08 2QQC 0

JRNL AUTH E.V.SORIANO,D.E.MCCLOSKEY,C.KINSLAND,A.E.PEGG, JRNL AUTH 2 S.E.EALICK JRNL TITL STRUCTURES OF THE N47A AND E109Q MUTANT PROTEINS JRNL TITL 2 OF PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE FROM JRNL TITL 3 METHANOCOCCUS JANNASCHII. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 377 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 18391404 JRNL DOI 10.1107/S0907444908000474

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 350977.980 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 59694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6043 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8633 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 973 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7013 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 533 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : 5.90000 REMARK 3 B33 (A**2) : -6.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.08 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.75 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.390 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.130 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.160 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.220 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 56.89 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : PYRU.PARAM REMARK 3 PARAMETER FILE 4 : AG.PARAM REMARK 3 PARAMETER FILE 5 : MPD.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : PYRU.TOP REMARK 3 TOPOLOGY FILE 4 : AG.TOP REMARK 3 TOPOLOGY FILE 5 : MPD.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED

REMARK 4 REMARK 4 2QQC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB043922.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9760 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59694 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.13500 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1N13 REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-20% PEG 2000, 10% MPD, 2.5% REMARK 280 GLYCEROL, 0.1 M HEPES, 0.005 M BETA-OCTYLGLUCOSIDE, 0.005 M REMARK 280 EDTA, 0.010 M DTT, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.40500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21440 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18730 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 ILE A 5 REMARK 465 ASN A 6 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 ALA C 3 REMARK 465 GLU C 4 REMARK 465 ILE C 5 REMARK 465 HIS E 0 REMARK 465 MET E 1 REMARK 465 ASN E 2 REMARK 465 HIS G 0 REMARK 465 MET G 1 REMARK 465 ASN G 2 REMARK 465 ALA G 3 REMARK 465 GLU G 4 REMARK 465 ILE G 5 REMARK 465 ASN G 6 REMARK 465 PRO G 7 REMARK 465 LEU G 8 REMARK 465 HIS G 9 REMARK 465 ALA G 10 REMARK 465 TYR G 11 REMARK 465 PHE G 12 REMARK 465 HIS I 0 REMARK 465 MET I 1 REMARK 465 ASN I 2 REMARK 465 ALA I 3 REMARK 465 GLU I 4 REMARK 465 ILE I 5 REMARK 465 ASN I 6 REMARK 465 PRO I 7 REMARK 465 LEU I 8 REMARK 465 HIS I 9 REMARK 465 ALA I 10 REMARK 465 TYR I 11 REMARK 465 PHE I 12 REMARK 465 HIS K 0 REMARK 465 MET K 1 REMARK 465 ASN K 2 REMARK 465 ALA K 3 REMARK 465 GLU K 4 REMARK 465 ILE K 5 REMARK 465 ASN K 6 REMARK 465 PRO K 7 REMARK 465 LEU K 8 REMARK 465 HIS K 9 REMARK 465 ALA K 10 REMARK 465 TYR K 11 REMARK 465 PHE K 12

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 58 -1.58 73.94 REMARK 500 GLU B 151 -62.05 -92.91 REMARK 500 GLU D 58 -2.03 71.59 REMARK 500 LYS D 113 72.09 -100.24 REMARK 500 GLU D 151 -60.67 -95.49 REMARK 500 LYS D 152 -55.80 -123.70 REMARK 500 TRP D 163 -158.25 -146.24 REMARK 500 GLU F 58 -1.40 68.96 REMARK 500 LYS F 113 73.42 -102.04 REMARK 500 LYS F 152 -44.73 -132.94 REMARK 500 GLU H 58 -16.06 78.35 REMARK 500 LYS H 152 -40.87 -141.00 REMARK 500 LEU H 153 109.76 -166.37 REMARK 500 LYS J 152 -58.18 -121.82 REMARK 500 TRP J 163 -159.83 -145.74 REMARK 500 LEU L 153 110.09 -162.94 REMARK 500 TRP L 163 -159.73 -144.20 REMARK 500 REMARK 500 REMARK: NULL

REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PYR B 53 REMARK 610 PYR D 53 REMARK 610 PYR F 53 REMARK 610 PYR H 53 REMARK 610 PYR J 53 REMARK 610 PYR L 53

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 A 671 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 E 671 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 A 672 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 K 671 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 I 671 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 I 672 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR B 53 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR D 53 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR F 53 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR H 53 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR J 53 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR L 53 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 700 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD E 700 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 700 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD I 700

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QQD RELATED DB: PDB

DBREF 2QQC A 1 52 UNP Q57764 PDAD_METJA 1 52 DBREF 2QQC B 54 165 UNP Q57764 PDAD_METJA 54 165 DBREF 2QQC C 1 52 UNP Q57764 PDAD_METJA 1 52 DBREF 2QQC D 54 165 UNP Q57764 PDAD_METJA 54 165 DBREF 2QQC E 1 52 UNP Q57764 PDAD_METJA 1 52 DBREF 2QQC F 54 165 UNP Q57764 PDAD_METJA 54 165 DBREF 2QQC G 1 52 UNP Q57764 PDAD_METJA 1 52 DBREF 2QQC H 54 165 UNP Q57764 PDAD_METJA 54 165 DBREF 2QQC I 1 52 UNP Q57764 PDAD_METJA 1 52 DBREF 2QQC J 54 165 UNP Q57764 PDAD_METJA 54 165 DBREF 2QQC K 1 52 UNP Q57764 PDAD_METJA 1 52 DBREF 2QQC L 54 165 UNP Q57764 PDAD_METJA 54 165

SEQADV 2QQC HIS A 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQC GLN B 109 UNP Q57764 GLU 109 ENGINEERED SEQADV 2QQC HIS C 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQC GLN D 109 UNP Q57764 GLU 109 ENGINEERED SEQADV 2QQC HIS E 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQC GLN F 109 UNP Q57764 GLU 109 ENGINEERED SEQADV 2QQC HIS G 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQC GLN H 109 UNP Q57764 GLU 109 ENGINEERED SEQADV 2QQC HIS I 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQC GLN J 109 UNP Q57764 GLU 109 ENGINEERED SEQADV 2QQC HIS K 0 UNP Q57764 EXPRESSION TAG SEQADV 2QQC GLN L 109 UNP Q57764 GLU 109 ENGINEERED

SEQRES 1 A 53 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 A 53 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 A 53 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 A 53 LEU ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SEQRES 5 A 53 SER SEQRES 1 B 112 ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO LYS SEQRES 2 B 112 LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY TYR SEQRES 3 B 112 ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA ALA SEQRES 4 B 112 ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS GLY SEQRES 5 B 112 LEU ILE MET GLN TYR GLU GLY LYS CYS SER LYS LYS GLU SEQRES 6 B 112 ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY PHE SEQRES 7 B 112 GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER ILE SEQRES 8 B 112 ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA PHE SEQRES 9 B 112 ALA ALA ALA ALA LEU TRP TYR LYS SEQRES 1 C 53 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 C 53 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 C 53 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 C 53 LEU ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SEQRES 5 C 53 SER SEQRES 1 D 112 ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO LYS SEQRES 2 D 112 LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY TYR SEQRES 3 D 112 ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA ALA SEQRES 4 D 112 ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS GLY SEQRES 5 D 112 LEU ILE MET GLN TYR GLU GLY LYS CYS SER LYS LYS GLU SEQRES 6 D 112 ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY PHE SEQRES 7 D 112 GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER ILE SEQRES 8 D 112 ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA PHE SEQRES 9 D 112 ALA ALA ALA ALA LEU TRP TYR LYS SEQRES 1 E 53 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 E 53 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 E 53 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 E 53 LEU ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SEQRES 5 E 53 SER SEQRES 1 F 112 ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO LYS SEQRES 2 F 112 LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY TYR SEQRES 3 F 112 ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA ALA SEQRES 4 F 112 ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS GLY SEQRES 5 F 112 LEU ILE MET GLN TYR GLU GLY LYS CYS SER LYS LYS GLU SEQRES 6 F 112 ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY PHE SEQRES 7 F 112 GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER ILE SEQRES 8 F 112 ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA PHE SEQRES 9 F 112 ALA ALA ALA ALA LEU TRP TYR LYS SEQRES 1 G 53 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 G 53 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 G 53 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 G 53 LEU ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SEQRES 5 G 53 SER SEQRES 1 H 112 ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO LYS SEQRES 2 H 112 LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY TYR SEQRES 3 H 112 ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA ALA SEQRES 4 H 112 ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS GLY SEQRES 5 H 112 LEU ILE MET GLN TYR GLU GLY LYS CYS SER LYS LYS GLU SEQRES 6 H 112 ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY PHE SEQRES 7 H 112 GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER ILE SEQRES 8 H 112 ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA PHE SEQRES 9 H 112 ALA ALA ALA ALA LEU TRP TYR LYS SEQRES 1 I 53 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 I 53 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 I 53 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 I 53 LEU ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SEQRES 5 I 53 SER SEQRES 1 J 112 ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO LYS SEQRES 2 J 112 LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY TYR SEQRES 3 J 112 ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA ALA SEQRES 4 J 112 ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS GLY SEQRES 5 J 112 LEU ILE MET GLN TYR GLU GLY LYS CYS SER LYS LYS GLU SEQRES 6 J 112 ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY PHE SEQRES 7 J 112 GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER ILE SEQRES 8 J 112 ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA PHE SEQRES 9 J 112 ALA ALA ALA ALA LEU TRP TYR LYS SEQRES 1 K 53 HIS MET ASN ALA GLU ILE ASN PRO LEU HIS ALA TYR PHE SEQRES 2 K 53 LYS LEU PRO ASN THR VAL SER LEU VAL ALA GLY SER SER SEQRES 3 K 53 GLU GLY GLU THR PRO LEU ASN ALA PHE ASP GLY ALA LEU SEQRES 4 K 53 LEU ASN ALA GLY ILE GLY ASN VAL ASN LEU ILE ARG ILE SEQRES 5 K 53 SER SEQRES 1 L 112 ILE MET PRO PRO GLU ALA GLU ILE VAL PRO LEU PRO LYS SEQRES 2 L 112 LEU PRO MET GLY ALA LEU VAL PRO THR ALA TYR GLY TYR SEQRES 3 L 112 ILE ILE SER ASP VAL PRO GLY GLU THR ILE SER ALA ALA SEQRES 4 L 112 ILE SER VAL ALA ILE PRO LYS ASP LYS SER LEU CYS GLY SEQRES 5 L 112 LEU ILE MET GLN TYR GLU GLY LYS CYS SER LYS LYS GLU SEQRES 6 L 112 ALA GLU LYS THR VAL ARG GLU MET ALA LYS ILE GLY PHE SEQRES 7 L 112 GLU MET ARG GLY TRP GLU LEU ASP ARG ILE GLU SER ILE SEQRES 8 L 112 ALA VAL GLU HIS THR VAL GLU LYS LEU GLY CYS ALA PHE SEQRES 9 L 112 ALA ALA ALA ALA LEU TRP TYR LYS

HET AG2 A 671 9 HET AG2 A 672 9 HET PYR B 53 5 HET PYR D 53 5 HET AG2 E 671 9 HET PYR F 53 5 HET PYR H 53 5 HET AG2 I 671 9 HET AG2 I 672 9 HET PYR J 53 5 HET AG2 K 671 9 HET PYR L 53 5 HET MPD C 700 8 HET MPD E 700 8 HET MPD B 700 8 HET MPD I 700 8

HETNAM AG2 AGMATINE HETNAM PYR PYRUVIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL

HETSYN AG2 (4-AMINOBUTYL)GUANIDINE

FORMUL 13 AG2 6(C5 H14 N4) FORMUL 15 PYR 6(C3 H4 O3) FORMUL 25 MPD 4(C6 H14 O2) FORMUL 29 HOH *501(H2 O)

HELIX 1 1 THR A 29 GLY A 42 1 14 HELIX 2 2 SER B 115 GLY B 135 1 21 HELIX 3 3 HIS C 9 LYS C 13 5 5 HELIX 4 4 THR C 29 GLY C 42 1 14 HELIX 5 5 SER D 115 GLY D 135 1 21 HELIX 6 6 THR E 29 GLY E 42 1 14 HELIX 7 7 SER F 115 GLY F 135 1 21 HELIX 8 8 THR G 29 GLY G 42 1 14 HELIX 9 9 SER H 115 GLY H 135 1 21 HELIX 10 10 THR I 29 GLY I 42 1 14 HELIX 11 11 SER J 115 GLY J 135 1 21 HELIX 12 12 THR K 29 GLY K 42 1 14 HELIX 13 13 SER L 115 GLY L 135 1 21

SHEET 1 A 5 ASN A 47 ARG A 50 0 SHEET 2 A 5 LEU B 72 SER B 82 1 O VAL B 73 N ILE A 49 SHEET 3 A 5 GLY B 154 TRP B 163 -1 O ALA B 160 N ALA B 76 SHEET 4 A 5 THR A 17 GLU A 26 -1 N VAL A 21 O ALA B 159 SHEET 5 A 5 GLU B 60 ILE B 61 1 O GLU B 60 N VAL A 18 SHEET 1 B 3 LEU B 106 GLY B 112 0 SHEET 2 B 3 THR B 88 PRO B 98 -1 N ALA B 96 O LEU B 106 SHEET 3 B 3 LEU B 138 THR B 149 -1 O HIS B 148 N ILE B 89 SHEET 1 C 5 ASN C 47 ARG C 50 0 SHEET 2 C 5 LEU D 72 SER D 82 1 O THR D 75 N ILE C 49 SHEET 3 C 5 GLY D 154 TRP D 163 -1 O LEU D 162 N PRO D 74 SHEET 4 C 5 THR C 17 GLU C 26 -1 N SER C 19 O ALA D 161 SHEET 5 C 5 GLU D 60 ILE D 61 1 O GLU D 60 N VAL C 18 SHEET 1 D 3 LEU D 106 GLY D 112 0 SHEET 2 D 3 THR D 88 PRO D 98 -1 N ALA D 96 O LEU D 106 SHEET 3 D 3 LEU D 138 THR D 149 -1 O ASP D 139 N ILE D 97 SHEET 1 E 5 ASN E 47 ARG E 50 0 SHEET 2 E 5 LEU F 72 SER F 82 1 O VAL F 73 N ASN E 47 SHEET 3 E 5 GLY F 154 TRP F 163 -1 O ALA F 160 N ALA F 76 SHEET 4 E 5 THR E 17 GLU E 26 -1 N VAL E 21 O ALA F 159 SHEET 5 E 5 GLU F 60 ILE F 61 1 O GLU F 60 N VAL E 18 SHEET 1 F 3 LEU F 106 GLY F 112 0 SHEET 2 F 3 THR F 88 PRO F 98 -1 N ALA F 96 O LEU F 106 SHEET 3 F 3 LEU F 138 THR F 149 -1 O ASP F 139 N ILE F 97 SHEET 1 G 5 ASN G 47 ARG G 50 0 SHEET 2 G 5 LEU H 72 SER H 82 1 O THR H 75 N ILE G 49 SHEET 3 G 5 GLY H 154 TRP H 163 -1 O LEU H 162 N PRO H 74 SHEET 4 G 5 THR G 17 GLU G 26 -1 N VAL G 21 O ALA H 159 SHEET 5 G 5 GLU H 60 ILE H 61 1 O GLU H 60 N VAL G 18 SHEET 1 H 3 LEU H 106 GLY H 112 0 SHEET 2 H 3 THR H 88 PRO H 98 -1 N ALA H 96 O LEU H 106 SHEET 3 H 3 LEU H 138 THR H 149 -1 O ASP H 139 N ILE H 97 SHEET 1 I 5 ASN I 47 ARG I 50 0 SHEET 2 I 5 LEU J 72 SER J 82 1 O VAL J 73 N ASN I 47 SHEET 3 I 5 GLY J 154 TRP J 163 -1 O ALA J 160 N ALA J 76 SHEET 4 I 5 THR I 17 GLU I 26 -1 N SER I 19 O ALA J 161 SHEET 5 I 5 GLU J 60 ILE J 61 1 O GLU J 60 N VAL I 18 SHEET 1 J 3 LEU J 106 GLY J 112 0 SHEET 2 J 3 THR J 88 PRO J 98 -1 N ALA J 92 O TYR J 110 SHEET 3 J 3 LEU J 138 THR J 149 -1 O GLU J 142 N VAL J 95 SHEET 1 K 5 ASN K 47 ARG K 50 0 SHEET 2 K 5 LEU L 72 SER L 82 1 O VAL L 73 N ASN K 47 SHEET 3 K 5 GLY L 154 TRP L 163 -1 O LEU L 162 N PRO L 74 SHEET 4 K 5 THR K 17 GLU K 26 -1 N VAL K 21 O ALA L 159 SHEET 5 K 5 GLU L 60 ILE L 61 1 O GLU L 60 N VAL K 18 SHEET 1 L 3 LEU L 106 GLY L 112 0 SHEET 2 L 3 THR L 88 PRO L 98 -1 N ALA L 96 O LEU L 106 SHEET 3 L 3 LEU L 138 THR L 149 -1 O HIS L 148 N ILE L 89

LINK N ILE B 54 C1 PYR B 53 1555 1555 1.33 LINK N ILE D 54 C1 PYR D 53 1555 1555 1.33 LINK N ILE F 54 C1 PYR F 53 1555 1555 1.34 LINK N ILE H 54 C1 PYR H 53 1555 1555 1.33 LINK N ILE J 54 C1 PYR J 53 1555 1555 1.33 LINK N ILE L 54 C1 PYR L 53 1555 1555 1.33

SITE 1 AC1 7 SER A 52 ILE B 107 GLN B 109 LEU C 31 SITE 2 AC1 7 ASP C 35 LEU C 38 GLY C 44 SITE 1 AC2 8 SER C 52 ILE D 107 GLN D 109 ARG D 134 SITE 2 AC2 8 LEU E 31 ASP E 35 LEU E 38 GLY E 44 SITE 1 AC3 9 LEU A 31 ASP A 35 LEU A 38 GLY A 44 SITE 2 AC3 9 SER E 52 ILE F 107 MET F 108 GLN F 109 SITE 3 AC3 9 ARG F 134 SITE 1 AC4 9 SER G 52 ILE H 107 MET H 108 GLN H 109 SITE 2 AC4 9 ARG H 134 LEU K 31 ASP K 35 LEU K 38 SITE 3 AC4 9 GLY K 44 SITE 1 AC5 7 LEU G 31 ASP G 35 LEU G 38 GLY G 44 SITE 2 AC5 7 SER I 52 ILE J 107 GLN J 109 SITE 1 AC6 8 LEU I 31 ASP I 35 LEU I 38 GLY I 44 SITE 2 AC6 8 SER K 52 ILE L 107 MET L 108 GLN L 109 SITE 1 AC7 6 ILE A 51 ILE B 54 ALA B 76 LEU B 106 SITE 2 AC7 6 ILE B 107 ASN C 47 SITE 1 AC8 6 ILE C 51 ILE D 54 ALA D 76 LEU D 106 SITE 2 AC8 6 ILE D 107 ASN E 47 SITE 1 AC9 6 ASN A 47 ILE E 51 ILE F 54 ALA F 76 SITE 2 AC9 6 LEU F 106 ILE F 107 SITE 1 BC1 5 ILE G 51 ILE H 54 LEU H 106 ILE H 107 SITE 2 BC1 5 ASN K 47 SITE 1 BC2 4 ASN G 47 ILE I 51 ILE J 54 ILE J 107 SITE 1 BC3 6 ASN I 47 ILE K 51 ILE L 54 ALA L 76 SITE 2 BC3 6 LEU L 106 ILE L 107 SITE 1 BC4 4 LEU C 31 PHE C 34 TYR D 77 TYR D 79 SITE 1 BC5 4 HOH C 716 LEU E 31 PHE E 34 TYR F 79 SITE 1 BC6 4 LEU A 31 TYR B 77 TYR B 79 HOH E 750 SITE 1 BC7 2 PHE I 34 HOH K 697

CRYST1 58.108 92.810 85.707 90.00 95.11 90.00 P 1 21 1 12

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.017209 0.000000 0.001539 0.00000

SCALE2 0.000000 0.010775 0.000000 0.00000

SCALE3 0.000000 0.000000 0.011714 0.00000