10 20 30 40 50 60 70 80 2QH2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 29-JUN-07 2QH2
TITLE SOLUTION STRUCTURE OF THE CR7 TERMINAL HAIRPIN LOOP FROM TITLE 2 HUMAN TELOMERASE RNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN TELOMERASE RNA CR7 TERMINAL HAIRPIN LOOP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: RNA IS SYNTHESIZED USING IN VITRO SOURCE 4 TRANSCRIPTION WITH T7 RNA POLYMERASE AND A PARTIALLY SOURCE 5 DOUBLE-STRANDED DNA TEMPLATE
KEYWDS LOOP, WOBBLE BASE PAIR, SYN G, RNA
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.FEIGON,C.A.THEIMER,N CHIM,K.E.BREECE
REVDAT 3 24-FEB-09 2QH2 1 VERSN REVDAT 2 30-OCT-07 2QH2 1 JRNL REVDAT 1 25-SEP-07 2QH2 0
JRNL AUTH C.A.THEIMER,B.E.JADY,N.CHIM,P.RICHARD,K.E.BREECE, JRNL AUTH 2 T.KISS,J.FEIGON JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF JRNL TITL 2 HUMAN TELOMERASE RNA PROCESSING AND CAJAL BODY JRNL TITL 3 LOCALIZATION SIGNALS. JRNL REF MOL.CELL V. 27 869 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17889661 JRNL DOI 10.1016/J.MOLCEL.2007.07.017
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : NIH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON 526 NOE- REMARK 3 DERIVED DISTANCE CONTRAINTS, 90 DIHEDRAL ANGLE RESTRAINTS, 24 REMARK 3 DISTANCE RESTRAINTS FROM HYDROGEN BONDS, AND 19 H-C RESIDUAL REMARK 3 DIPOLAR COUPLINGS
REMARK 4 REMARK 4 2QH2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043589.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 293 REMARK 210 PH : 6.3; 6.3 REMARK 210 IONIC STRENGTH : 200 MM KCL; 200 MM KCL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM UNLABELED RNA, 10 MM REMARK 210 SODIUM PHOSPHATE BUFFER, PH REMARK 210 6.3, 200 MM KCL, 50 UM EDTA, REMARK 210 0.2% SODIUM AZIDE; 95% H2O, 5% REMARK 210 D2O OR 100% D2O; 1 MM 13C, 15N REMARK 210 LABELED RNA, 10 MM SODIUM REMARK 210 PHOSPHATE BUFFER, PH 6.3, 200 REMARK 210 MM KCL, 50 UM EDTA, 0.2% REMARK 210 SODIUM AZIDE; 95% H2O, 5% D2O REMARK 210 OR 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY (11ECHO AND REMARK 210 WATERGATE), 2D NOESY, 2D REMARK 210 TOCSY, NATURAL ABUNDANCE 2D REMARK 210 13C HSQC, 2D 15N-HMQC, 2D 15N- REMARK 210 CPMG-NOESY, 2D JNN-HNN-COSY, REMARK 210 2D 13C-HSQC, 2D HCCH-COCSY, 3D REMARK 210 HCCH-TOCSY, 3D NOESY-HMQC, 2D REMARK 210 31P SPIN ECHO DIFFERENCE HCCH/ REMARK 210 HSQC/HMQC, 2D CT-CE-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DPX, DRX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, AURELIA 3.108, X REMARK 210 -PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, NO RESTRAINT REMARK 210 VIOLATION, CONSISTENT WITH REMARK 210 RESIDUAL DIPOLAR COUPLINGS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' A A 11 O4' G A 12 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 A A 3 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 6 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 6 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 10 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 10 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 11 N7 - C8 - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 A A 11 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 12 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 12 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 15 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 G A 15 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 17 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 17 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 18 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 18 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 A A 20 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 3 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 6 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 6 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 10 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 10 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 11 N7 - C8 - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 A A 11 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 12 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 12 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 15 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 G A 17 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 G A 17 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 18 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 18 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 20 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 3 A A 3 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 432 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL
DBREF 2QH2 A 1 24 PDB 2QH2 2QH2 1 24
SEQRES 1 A 24 G G A G U G C C U G A G C SEQRES 2 A 24 U G U G G C A C U C C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000