10 20 30 40 50 60 70 80 2Q2Z - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL CYCLE 29-MAY-07 2Q2Z
TITLE CRYSTAL STRUCTURE OF KSP IN COMPLEX WITH INHIBITOR 22
COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN KIF11; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KINESIN-RELATED MOTOR PROTEIN EG5, KINESIN-LIKE COMPND 5 SPINDLE PROTEIN HKSP, THYROID RECEPTOR-INTERACTING PROTEIN COMPND 6 5, TRIP-5, KINESIN-LIKE PROTEIN 1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIF11, EG5, KNSL1, TRIP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DZ3
KEYWDS KSP, KSP-INHIBITOR COMPLEX, CELL CYCLE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.YAN
REVDAT 3 24-FEB-09 2Q2Z 1 VERSN REVDAT 2 09-OCT-07 2Q2Z 1 JRNL REVDAT 1 18-SEP-07 2Q2Z 0
JRNL AUTH A.J.ROECKER,P.J.COLEMAN,S.P.MERCER,J.D.SCHREIER, JRNL AUTH 2 C.A.BUSER,E.S.WALSH,K.HAMILTON,R.B.LOBELL,W.TAO, JRNL AUTH 3 R.E.DIEHL,V.J.SOUTH,J.P.DAVIDE,N.E.KOHL,Y.YAN, JRNL AUTH 4 L.C.KUO,C.LI,C.FERNANDEZ-METZLER,E.A.MAHAN, JRNL AUTH 5 T.PRUEKSARITANONT,G.D.HARTMAN JRNL TITL KINESIN SPINDLE PROTEIN (KSP) INHIBITORS. PART 8: JRNL TITL 2 DESIGN AND SYNTHESIS OF JRNL TITL 3 1,4-DIARYL-4,5-DIHYDROPYRAZOLES AS POTENT JRNL TITL 4 INHIBITORS OF THE MITOTIC KINESIN KSP. JRNL REF BIOORG.MED.CHEM.LETT. V. 17 5677 2007 JRNL REFN ISSN 0960-894X JRNL PMID 17766111 JRNL DOI 10.1016/J.BMCL.2007.07.074
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 1.9.2 REMARK 3 AUTHORS : BLANC,ROVERSI,VONRHEIN,BRICOGNE,TRONRUD, REMARK 3 : TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 17087 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 879 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2829 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 18.3500 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2687 REMARK 3 BIN R VALUE (WORKING SET) : 0.1741 REMARK 3 BIN FREE R VALUE : 0.3516 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 142 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.34979 REMARK 3 B22 (A**2) : 4.77176 REMARK 3 B33 (A**2) : 2.57804 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.008 ; 2.000 ; 5398 REMARK 3 BOND ANGLES (DEGREES) : 1.142 ; 2.000 ; 7294 REMARK 3 TORSION ANGLES (DEGREES) : 27.950 ; 0.000 ; 1216 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.008 ; 2.000 ; 166 REMARK 3 GENERAL PLANES (A) : 0.012 ; 5.000 ; 782 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 2.649 ; 20.000; 5400 REMARK 3 NON-BONDED CONTACTS (A) : 0.053 ; 5.000 ; 222 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2Q2Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB043083.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : VARIMAX-CUHR MAX-FLUX REMARK 200 CONFOCAL OPTICAL SYSTEM REMARK 200 OPTICS : VARIMAX-CUHR MAX-FLUX REMARK 200 CONFOCAL OPTICAL SYSTEM REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17087 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : 0.12900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : 0.35800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, POTASSIUM PHOSPHATE, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.60000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.28500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.28500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS MOTOR DOMAIN IS A PART OF A MULTI-DOMAIN PROTEIN REMARK 300 THAT FORMS A TETRAMER. THERE ARE TWO MONOMERS IN AN ASYMETRIC REMARK 300 UNIT.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 LYS A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 LYS A 15 REMARK 465 GLY A 16 REMARK 465 LYS A 17 REMARK 465 ILE A 272 REMARK 465 GLY A 273 REMARK 465 ARG A 274 REMARK 465 SER A 275 REMARK 465 GLY A 276 REMARK 465 ALA A 277 REMARK 465 VAL A 278 REMARK 465 ASP A 279 REMARK 465 LYS A 280 REMARK 465 ARG A 281 REMARK 465 ALA A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 GLY A 286 REMARK 465 PRO A 363 REMARK 465 GLU A 364 REMARK 465 VAL A 365 REMARK 465 ASN A 366 REMARK 465 GLN A 367 REMARK 465 LYS A 368 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 PRO B 5 REMARK 465 ASN B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 ALA B 9 REMARK 465 LYS B 10 REMARK 465 LYS B 11 REMARK 465 LYS B 12 REMARK 465 GLU B 13 REMARK 465 GLU B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 LYS B 17 REMARK 465 ILE B 272 REMARK 465 GLY B 273 REMARK 465 ARG B 274 REMARK 465 SER B 275 REMARK 465 GLY B 276 REMARK 465 ALA B 277 REMARK 465 VAL B 278 REMARK 465 ASP B 279 REMARK 465 LYS B 280 REMARK 465 ARG B 281 REMARK 465 ALA B 282 REMARK 465 ARG B 283 REMARK 465 GLU B 284 REMARK 465 ALA B 285 REMARK 465 GLY B 286 REMARK 465 PRO B 363 REMARK 465 GLU B 364 REMARK 465 VAL B 365 REMARK 465 ASN B 366 REMARK 465 GLN B 367 REMARK 465 LYS B 368
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 27 C - N - CD ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO A 121 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP B 170 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PRO B 188 C - N - CD ANGL. DEV. = -21.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 30 11.21 -56.40 REMARK 500 SER A 36 44.79 31.28 REMARK 500 ILE A 40 15.91 -152.64 REMARK 500 LEU A 57 116.28 86.96 REMARK 500 ASP A 59 -92.26 -101.43 REMARK 500 MET A 70 144.78 -177.39 REMARK 500 GLN A 106 170.18 -48.57 REMARK 500 PRO A 121 163.32 -45.00 REMARK 500 ASN A 122 -1.30 58.96 REMARK 500 GLU A 123 24.53 81.28 REMARK 500 GLU A 129 11.73 -148.41 REMARK 500 PRO A 131 -8.25 -52.86 REMARK 500 ILE A 135 -84.19 -33.62 REMARK 500 GLU A 145 4.52 -47.84 REMARK 500 LYS A 146 -63.71 -122.88 REMARK 500 SER A 155 138.57 -174.65 REMARK 500 ASN A 165 33.37 75.17 REMARK 500 ASN A 173 107.88 -40.83 REMARK 500 ASP A 177 -139.18 -54.93 REMARK 500 GLU A 180 99.07 -62.96 REMARK 500 ARG A 189 -90.17 -56.46 REMARK 500 LYS A 191 154.05 -49.29 REMARK 500 LYS A 207 -8.80 -41.98 REMARK 500 VAL A 210 -71.34 -36.89 REMARK 500 ALA A 219 -73.69 -66.66 REMARK 500 GLU A 247 171.90 -46.73 REMARK 500 THR A 248 87.54 -170.59 REMARK 500 THR A 249 -177.20 -59.69 REMARK 500 ILE A 250 38.12 -69.16 REMARK 500 ASP A 251 -89.09 -118.60 REMARK 500 PRO A 310 44.31 -65.55 REMARK 500 ARG A 312 7.99 -50.59 REMARK 500 ASN A 361 -143.20 -97.32 REMARK 500 ILE B 19 142.89 -27.64 REMARK 500 ASN B 29 -147.81 -112.29 REMARK 500 SER B 36 97.65 48.48 REMARK 500 VAL B 46 -76.17 -60.23 REMARK 500 ARG B 47 1.89 -67.57 REMARK 500 LEU B 57 -156.34 -86.47 REMARK 500 SER B 75 -76.82 -43.39 REMARK 500 THR B 76 112.19 -16.60 REMARK 500 GLU B 123 22.26 39.36 REMARK 500 THR B 139 -39.78 -37.10 REMARK 500 GLU B 145 -70.27 -58.77 REMARK 500 ASP B 149 17.54 178.71 REMARK 500 SER B 179 -14.72 -37.36 REMARK 500 PRO B 188 -23.10 -35.96 REMARK 500 ARG B 189 -89.51 -62.38 REMARK 500 LYS B 207 2.97 -68.53 REMARK 500 GLU B 215 -37.14 -35.63 REMARK 500 THR B 249 -174.60 -56.50 REMARK 500 LEU B 266 164.67 -47.62 REMARK 500 PRO B 310 48.35 -47.35 REMARK 500 ARG B 327 35.69 -77.15 REMARK 500 PRO B 338 6.63 -68.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 614 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH B 616 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH B 620 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH A 621 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH B 622 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 11.18 ANGSTROMS REMARK 525 HOH A 624 DISTANCE = 11.73 ANGSTROMS REMARK 525 HOH B 626 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH B 629 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 634 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 637 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH A 640 DISTANCE = 14.35 ANGSTROMS REMARK 525 HOH A 643 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH A 644 DISTANCE = 10.81 ANGSTROMS REMARK 525 HOH A 645 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH A 653 DISTANCE = 14.15 ANGSTROMS REMARK 525 HOH A 655 DISTANCE = 10.27 ANGSTROMS REMARK 525 HOH B 657 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH B 660 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 18.12 ANGSTROMS REMARK 525 HOH B 661 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 661 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH B 662 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH A 662 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH B 663 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH A 666 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH A 676 DISTANCE = 9.51 ANGSTROMS REMARK 525 HOH A 678 DISTANCE = 12.01 ANGSTROMS REMARK 525 HOH A 679 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH A 680 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH A 681 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A 684 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH A 688 DISTANCE = 13.25 ANGSTROMS REMARK 525 HOH A 689 DISTANCE = 18.30 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 112 OG1 REMARK 620 2 ADP A 601 O3B 57.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 602 O3B REMARK 620 2 THR B 112 OG1 62.9 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 603 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 604 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 601 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 602 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MKK A 604 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MKK B 605
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q2Y RELATED DB: PDB
DBREF 2Q2Z A 2 368 UNP P52732 KIF11_HUMAN 2 368 DBREF 2Q2Z B 2 368 UNP P52732 KIF11_HUMAN 2 368
SEQRES 1 A 367 ALA SER GLN PRO ASN SER SER ALA LYS LYS LYS GLU GLU SEQRES 2 A 367 LYS GLY LYS ASN ILE GLN VAL VAL VAL ARG CYS ARG PRO SEQRES 3 A 367 PHE ASN LEU ALA GLU ARG LYS ALA SER ALA HIS SER ILE SEQRES 4 A 367 VAL GLU CYS ASP PRO VAL ARG LYS GLU VAL SER VAL ARG SEQRES 5 A 367 THR GLY GLY LEU ALA ASP LYS SER SER ARG LYS THR TYR SEQRES 6 A 367 THR PHE ASP MET VAL PHE GLY ALA SER THR LYS GLN ILE SEQRES 7 A 367 ASP VAL TYR ARG SER VAL VAL CYS PRO ILE LEU ASP GLU SEQRES 8 A 367 VAL ILE MET GLY TYR ASN CYS THR ILE PHE ALA TYR GLY SEQRES 9 A 367 GLN THR GLY THR GLY LYS THR PHE THR MET GLU GLY GLU SEQRES 10 A 367 ARG SER PRO ASN GLU GLU TYR THR TRP GLU GLU ASP PRO SEQRES 11 A 367 LEU ALA GLY ILE ILE PRO ARG THR LEU HIS GLN ILE PHE SEQRES 12 A 367 GLU LYS LEU THR ASP ASN GLY THR GLU PHE SER VAL LYS SEQRES 13 A 367 VAL SER LEU LEU GLU ILE TYR ASN GLU GLU LEU PHE ASP SEQRES 14 A 367 LEU LEU ASN PRO SER SER ASP VAL SER GLU ARG LEU GLN SEQRES 15 A 367 MET PHE ASP ASP PRO ARG ASN LYS ARG GLY VAL ILE ILE SEQRES 16 A 367 LYS GLY LEU GLU GLU ILE THR VAL HIS ASN LYS ASP GLU SEQRES 17 A 367 VAL TYR GLN ILE LEU GLU LYS GLY ALA ALA LYS ARG THR SEQRES 18 A 367 THR ALA ALA THR LEU MET ASN ALA TYR SER SER ARG SER SEQRES 19 A 367 HIS SER VAL PHE SER VAL THR ILE HIS MET LYS GLU THR SEQRES 20 A 367 THR ILE ASP GLY GLU GLU LEU VAL LYS ILE GLY LYS LEU SEQRES 21 A 367 ASN LEU VAL ASP LEU ALA GLY SER GLU ASN ILE GLY ARG SEQRES 22 A 367 SER GLY ALA VAL ASP LYS ARG ALA ARG GLU ALA GLY ASN SEQRES 23 A 367 ILE ASN GLN SER LEU LEU THR LEU GLY ARG VAL ILE THR SEQRES 24 A 367 ALA LEU VAL GLU ARG THR PRO HIS VAL PRO TYR ARG GLU SEQRES 25 A 367 SER LYS LEU THR ARG ILE LEU GLN ASP SER LEU GLY GLY SEQRES 26 A 367 ARG THR ARG THR SER ILE ILE ALA THR ILE SER PRO ALA SEQRES 27 A 367 SER LEU ASN LEU GLU GLU THR LEU SER THR LEU GLU TYR SEQRES 28 A 367 ALA HIS ARG ALA LYS ASN ILE LEU ASN LYS PRO GLU VAL SEQRES 29 A 367 ASN GLN LYS SEQRES 1 B 367 ALA SER GLN PRO ASN SER SER ALA LYS LYS LYS GLU GLU SEQRES 2 B 367 LYS GLY LYS ASN ILE GLN VAL VAL VAL ARG CYS ARG PRO SEQRES 3 B 367 PHE ASN LEU ALA GLU ARG LYS ALA SER ALA HIS SER ILE SEQRES 4 B 367 VAL GLU CYS ASP PRO VAL ARG LYS GLU VAL SER VAL ARG SEQRES 5 B 367 THR GLY GLY LEU ALA ASP LYS SER SER ARG LYS THR TYR SEQRES 6 B 367 THR PHE ASP MET VAL PHE GLY ALA SER THR LYS GLN ILE SEQRES 7 B 367 ASP VAL TYR ARG SER VAL VAL CYS PRO ILE LEU ASP GLU SEQRES 8 B 367 VAL ILE MET GLY TYR ASN CYS THR ILE PHE ALA TYR GLY SEQRES 9 B 367 GLN THR GLY THR GLY LYS THR PHE THR MET GLU GLY GLU SEQRES 10 B 367 ARG SER PRO ASN GLU GLU TYR THR TRP GLU GLU ASP PRO SEQRES 11 B 367 LEU ALA GLY ILE ILE PRO ARG THR LEU HIS GLN ILE PHE SEQRES 12 B 367 GLU LYS LEU THR ASP ASN GLY THR GLU PHE SER VAL LYS SEQRES 13 B 367 VAL SER LEU LEU GLU ILE TYR ASN GLU GLU LEU PHE ASP SEQRES 14 B 367 LEU LEU ASN PRO SER SER ASP VAL SER GLU ARG LEU GLN SEQRES 15 B 367 MET PHE ASP ASP PRO ARG ASN LYS ARG GLY VAL ILE ILE SEQRES 16 B 367 LYS GLY LEU GLU GLU ILE THR VAL HIS ASN LYS ASP GLU SEQRES 17 B 367 VAL TYR GLN ILE LEU GLU LYS GLY ALA ALA LYS ARG THR SEQRES 18 B 367 THR ALA ALA THR LEU MET ASN ALA TYR SER SER ARG SER SEQRES 19 B 367 HIS SER VAL PHE SER VAL THR ILE HIS MET LYS GLU THR SEQRES 20 B 367 THR ILE ASP GLY GLU GLU LEU VAL LYS ILE GLY LYS LEU SEQRES 21 B 367 ASN LEU VAL ASP LEU ALA GLY SER GLU ASN ILE GLY ARG SEQRES 22 B 367 SER GLY ALA VAL ASP LYS ARG ALA ARG GLU ALA GLY ASN SEQRES 23 B 367 ILE ASN GLN SER LEU LEU THR LEU GLY ARG VAL ILE THR SEQRES 24 B 367 ALA LEU VAL GLU ARG THR PRO HIS VAL PRO TYR ARG GLU SEQRES 25 B 367 SER LYS LEU THR ARG ILE LEU GLN ASP SER LEU GLY GLY SEQRES 26 B 367 ARG THR ARG THR SER ILE ILE ALA THR ILE SER PRO ALA SEQRES 27 B 367 SER LEU ASN LEU GLU GLU THR LEU SER THR LEU GLU TYR SEQRES 28 B 367 ALA HIS ARG ALA LYS ASN ILE LEU ASN LYS PRO GLU VAL SEQRES 29 B 367 ASN GLN LYS
HET MG A 603 1 HET MG B 604 1 HET ADP A 601 27 HET ADP B 602 27 HET MKK A 604 34 HET MKK B 605 34
HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MKK 1-[(4R)-4-[3-(4-ACETYLPIPERAZIN-1-YL)PROPYL]-1-(2- HETNAM 2 MKK FLUORO-5-METHYLPHENYL)-4-PHENYL-4,5-DIHYDRO-1H- HETNAM 3 MKK PYRAZOL-3-YL]ETHANONE
FORMUL 3 MG 2(MG 2+) FORMUL 5 ADP 2(C10 H15 N5 O10 P2) FORMUL 7 MKK 2(C27 H33 F N4 O2) FORMUL 9 HOH *154(H2 O)
HELIX 1 1 ASN A 29 ALA A 35 1 7 HELIX 2 2 LYS A 77 ILE A 94 1 18 HELIX 3 3 GLY A 110 GLU A 116 1 7 HELIX 4 4 GLY A 134 THR A 148 1 15 HELIX 5 5 GLU A 209 MET A 228 1 20 HELIX 6 6 ALA A 230 SER A 235 1 6 HELIX 7 7 ASN A 289 GLU A 304 1 16 HELIX 8 8 PRO A 310 GLU A 313 5 4 HELIX 9 9 SER A 314 LEU A 320 1 7 HELIX 10 10 GLN A 321 LEU A 324 5 4 HELIX 11 11 ASN A 342 ALA A 356 1 15 HELIX 12 12 ASN B 29 LYS B 34 1 6 HELIX 13 13 LYS B 77 MET B 95 1 19 HELIX 14 14 GLY B 110 GLU B 116 1 7 HELIX 15 15 THR B 126 ASP B 130 5 5 HELIX 16 16 GLY B 134 LEU B 147 1 14 HELIX 17 17 GLU B 209 MET B 228 1 20 HELIX 18 18 ALA B 230 SER B 235 1 6 HELIX 19 19 ASN B 289 GLU B 304 1 16 HELIX 20 20 PRO B 310 GLU B 313 5 4 HELIX 21 21 SER B 314 LEU B 320 1 7 HELIX 22 22 GLN B 321 LEU B 324 5 4 HELIX 23 23 ALA B 339 LEU B 341 5 3 HELIX 24 24 ASN B 342 ALA B 356 1 15 HELIX 25 25 LYS B 357 ILE B 359 5 3
SHEET 1 A 8 MET A 70 PHE A 72 0 SHEET 2 A 8 GLN A 20 CYS A 25 1 N VAL A 23 O PHE A 72 SHEET 3 A 8 ARG A 329 ILE A 336 1 O ALA A 334 N VAL A 22 SHEET 4 A 8 ASN A 98 GLY A 105 1 N THR A 100 O ARG A 329 SHEET 5 A 8 ILE A 258 ASP A 265 1 O ASN A 262 N ILE A 101 SHEET 6 A 8 HIS A 236 LYS A 246 -1 N PHE A 239 O LEU A 263 SHEET 7 A 8 GLU A 153 ILE A 163 -1 N LYS A 157 O THR A 242 SHEET 8 A 8 LEU A 168 ASP A 170 -1 O PHE A 169 N GLU A 162 SHEET 1 B 8 MET A 70 PHE A 72 0 SHEET 2 B 8 GLN A 20 CYS A 25 1 N VAL A 23 O PHE A 72 SHEET 3 B 8 ARG A 329 ILE A 336 1 O ALA A 334 N VAL A 22 SHEET 4 B 8 ASN A 98 GLY A 105 1 N THR A 100 O ARG A 329 SHEET 5 B 8 ILE A 258 ASP A 265 1 O ASN A 262 N ILE A 101 SHEET 6 B 8 HIS A 236 LYS A 246 -1 N PHE A 239 O LEU A 263 SHEET 7 B 8 GLU A 153 ILE A 163 -1 N LYS A 157 O THR A 242 SHEET 8 B 8 ILE A 202 THR A 203 -1 O ILE A 202 N VAL A 158 SHEET 1 C 3 VAL A 41 ASP A 44 0 SHEET 2 C 3 GLU A 49 ARG A 53 -1 O GLU A 49 N ASP A 44 SHEET 3 C 3 ARG A 63 THR A 67 -1 O LYS A 64 N VAL A 52 SHEET 1 D 2 GLN A 183 ASP A 186 0 SHEET 2 D 2 VAL A 194 LYS A 197 -1 O ILE A 195 N PHE A 185 SHEET 1 E 8 MET B 70 PHE B 72 0 SHEET 2 E 8 GLN B 20 CYS B 25 1 N VAL B 23 O PHE B 72 SHEET 3 E 8 ARG B 329 ILE B 336 1 O ALA B 334 N VAL B 22 SHEET 4 E 8 CYS B 99 TYR B 104 1 N TYR B 104 O ILE B 333 SHEET 5 E 8 GLU B 254 ASP B 265 1 O ASN B 262 N ILE B 101 SHEET 6 E 8 HIS B 236 THR B 248 -1 N MET B 245 O LYS B 257 SHEET 7 E 8 GLU B 153 ILE B 163 -1 N GLU B 153 O LYS B 246 SHEET 8 E 8 LEU B 168 ASP B 170 -1 O PHE B 169 N GLU B 162 SHEET 1 F 8 MET B 70 PHE B 72 0 SHEET 2 F 8 GLN B 20 CYS B 25 1 N VAL B 23 O PHE B 72 SHEET 3 F 8 ARG B 329 ILE B 336 1 O ALA B 334 N VAL B 22 SHEET 4 F 8 CYS B 99 TYR B 104 1 N TYR B 104 O ILE B 333 SHEET 5 F 8 GLU B 254 ASP B 265 1 O ASN B 262 N ILE B 101 SHEET 6 F 8 HIS B 236 THR B 248 -1 N MET B 245 O LYS B 257 SHEET 7 F 8 GLU B 153 ILE B 163 -1 N GLU B 153 O LYS B 246 SHEET 8 F 8 ILE B 202 THR B 203 -1 O ILE B 202 N VAL B 158 SHEET 1 G 2 GLU B 49 GLY B 56 0 SHEET 2 G 2 SER B 61 THR B 67 -1 O LYS B 64 N VAL B 52 SHEET 1 H 2 GLN B 183 PHE B 185 0 SHEET 2 H 2 ILE B 195 LYS B 197 -1 O ILE B 195 N PHE B 185
LINK MG MG A 603 OG1 THR A 112 1555 1555 2.60 LINK MG MG A 603 O3B ADP A 601 1555 1555 2.59 LINK MG MG B 604 O3B ADP B 602 1555 1555 2.71 LINK MG MG B 604 OG1 THR B 112 1555 1555 2.44
SITE 1 AC1 2 THR A 112 ADP A 601 SITE 1 AC2 3 THR B 112 SER B 232 ADP B 602 SITE 1 AC3 16 ARG A 24 ARG A 26 PRO A 27 GLN A 106 SITE 2 AC3 16 THR A 107 GLY A 108 THR A 109 GLY A 110 SITE 3 AC3 16 LYS A 111 THR A 112 PHE A 113 GLU A 118 SITE 4 AC3 16 MG A 603 HOH A 616 HOH A 635 HOH A 656 SITE 1 AC4 11 ARG B 24 ARG B 26 GLN B 106 GLY B 108 SITE 2 AC4 11 THR B 109 GLY B 110 LYS B 111 THR B 112 SITE 3 AC4 11 PHE B 113 GLU B 118 MG B 604 SITE 1 AC5 12 GLU A 116 GLU A 118 ARG A 119 ALA A 133 SITE 2 AC5 12 ILE A 136 PRO A 137 TYR A 211 LEU A 214 SITE 3 AC5 12 GLU A 215 GLY A 217 ALA A 218 THR B 222 SITE 1 AC6 10 THR A 222 GLU B 116 GLY B 117 GLU B 118 SITE 2 AC6 10 ARG B 119 ALA B 133 PRO B 137 TYR B 211 SITE 3 AC6 10 LEU B 214 ARG B 221
CRYST1 69.200 79.450 160.570 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014451 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012587 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006228 0.00000