10 20 30 40 50 60 70 80 2PZK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SUGAR BINDING PROTEIN 18-MAY-07 2PZK
TITLE CRYSTAL STRUCTURE OF THE BORDETELLA BRONCHISEPTICA ENZYME WBMG IN TITLE 2 COMPLEX WITH NAD
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NUCLEOTIDE SUGAR EPIMERASE/ DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA BRONCHISEPTICA; SOURCE 3 ORGANISM_TAXID: 518; SOURCE 4 GENE: BBLPS1.15, WBMG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS ROSSMANN FOLD, PROTEIN-NAD COMPLEX, SUGAR BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.D.KING,N.J.HARMER,D.J.MASKELL,T.L.BLUNDELL
REVDAT 4 12-NOV-14 2PZK 1 KEYWDS REVDAT 3 24-FEB-09 2PZK 1 VERSN REVDAT 2 11-DEC-07 2PZK 1 JRNL REVDAT 1 02-OCT-07 2PZK 0
JRNL AUTH J.D.KING,N.J.HARMER,A.PRESTON,C.M.PALMER,M.REJZEK,R.A.FIELD, JRNL AUTH 2 T.L.BLUNDELL,D.J.MASKELL JRNL TITL PREDICTING PROTEIN FUNCTION FROM STRUCTURE--THE ROLES OF JRNL TITL 2 SHORT-CHAIN DEHYDROGENASE/REDUCTASE ENZYMES IN BORDETELLA JRNL TITL 3 O-ANTIGEN BIOSYNTHESIS. JRNL REF J.MOL.BIOL. V. 374 749 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17950751 JRNL DOI 10.1016/J.JMB.2007.09.055
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.J.HARMER,J.D.KING,C.M.PALMER,A.PRESTON,D.J.MASKELL, REMARK 1 AUTH 2 T.L.BLUNDELL REMARK 1 TITL CLONING, EXPRESSION, PURIFICATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF THE SHORT-CHAIN DEHYDROGENASE REMARK 1 TITL 3 ENZYMES WBMF, WBMG AND WBMH FROM BORDETELLA BRONCHISEPTICA. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 711 2007 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 17671375 REMARK 1 DOI 10.1107/S174430910703477X
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 38661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2231 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4627 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 1.77000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4853 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6642 ; 1.598 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 621 ; 9.718 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;34.706 ;23.867 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 720 ;13.857 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.691 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 769 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3652 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2179 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3323 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 316 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3158 ; 0.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4994 ; 1.344 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1911 ; 2.036 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1646 ; 2.899 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2PZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB042961.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488, 0.97905 , 0.97938, 0.97668 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38661 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.830 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.08 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 0.2 M MGCL2, 16-18 % (W/W) REMARK 280 PEG 8000, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.02050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.02050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER, FORMED BY CHAINS A AND B.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 LYS A 309 REMARK 465 THR A 310 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 THR B 245 REMARK 465 LEU B 246 REMARK 465 ALA B 247 REMARK 465 ALA B 307 REMARK 465 PRO B 308 REMARK 465 LYS B 309 REMARK 465 THR B 310
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 LYS A 68 CD CE NZ REMARK 470 LYS A 109 NZ REMARK 470 LYS A 188 CE NZ REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 277 NZ REMARK 470 LYS A 295 NZ REMARK 470 LEU B -6 CD1 CD2 REMARK 470 GLU B 61 CD OE1 OE2 REMARK 470 LYS B 188 CE NZ REMARK 470 PHE B 190 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 192 OG REMARK 470 GLU B 227 OE1 OE2 REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 470 VAL B 253 CG1 CG2 REMARK 470 LYS B 283 CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 16 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 68 71.59 44.69 REMARK 500 TYR A 79 -15.47 -162.90 REMARK 500 ALA A 135 54.78 -149.39 REMARK 500 SER B -1 37.15 -148.44 REMARK 500 TYR B 79 -18.67 -164.62 REMARK 500 VAL B 93 -62.39 -94.01 REMARK 500 ALA B 135 47.82 -152.16 REMARK 500 PHE B 137 14.32 -141.93 REMARK 500 VAL B 253 -60.95 -104.35 REMARK 500 ALA B 254 -129.29 -88.06 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 401
DBREF 2PZK A 1 310 UNP O87988 O87988_BORBR 1 310 DBREF 2PZK B 1 310 UNP O87988 O87988_BORBR 1 310
SEQADV 2PZK MET A -19 UNP O87988 EXPRESSION TAG SEQADV 2PZK GLY A -18 UNP O87988 EXPRESSION TAG SEQADV 2PZK SER A -17 UNP O87988 EXPRESSION TAG SEQADV 2PZK SER A -16 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS A -15 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS A -14 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS A -13 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS A -12 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS A -11 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS A -10 UNP O87988 EXPRESSION TAG SEQADV 2PZK SER A -9 UNP O87988 EXPRESSION TAG SEQADV 2PZK SER A -8 UNP O87988 EXPRESSION TAG SEQADV 2PZK GLY A -7 UNP O87988 EXPRESSION TAG SEQADV 2PZK LEU A -6 UNP O87988 EXPRESSION TAG SEQADV 2PZK VAL A -5 UNP O87988 EXPRESSION TAG SEQADV 2PZK PRO A -4 UNP O87988 EXPRESSION TAG SEQADV 2PZK ARG A -3 UNP O87988 EXPRESSION TAG SEQADV 2PZK GLY A -2 UNP O87988 EXPRESSION TAG SEQADV 2PZK SER A -1 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS A 0 UNP O87988 EXPRESSION TAG SEQADV 2PZK MET B -19 UNP O87988 EXPRESSION TAG SEQADV 2PZK GLY B -18 UNP O87988 EXPRESSION TAG SEQADV 2PZK SER B -17 UNP O87988 EXPRESSION TAG SEQADV 2PZK SER B -16 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS B -15 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS B -14 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS B -13 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS B -12 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS B -11 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS B -10 UNP O87988 EXPRESSION TAG SEQADV 2PZK SER B -9 UNP O87988 EXPRESSION TAG SEQADV 2PZK SER B -8 UNP O87988 EXPRESSION TAG SEQADV 2PZK GLY B -7 UNP O87988 EXPRESSION TAG SEQADV 2PZK LEU B -6 UNP O87988 EXPRESSION TAG SEQADV 2PZK VAL B -5 UNP O87988 EXPRESSION TAG SEQADV 2PZK PRO B -4 UNP O87988 EXPRESSION TAG SEQADV 2PZK ARG B -3 UNP O87988 EXPRESSION TAG SEQADV 2PZK GLY B -2 UNP O87988 EXPRESSION TAG SEQADV 2PZK SER B -1 UNP O87988 EXPRESSION TAG SEQADV 2PZK HIS B 0 UNP O87988 EXPRESSION TAG
SEQRES 1 A 330 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 330 LEU VAL PRO ARG GLY SER HIS MET ARG ILE LEU ILE THR SEQRES 3 A 330 GLY GLY ALA GLY CYS LEU GLY SER ASN LEU ILE GLU HIS SEQRES 4 A 330 TRP LEU PRO GLN GLY HIS GLU ILE LEU VAL ILE ASP ASN SEQRES 5 A 330 PHE ALA THR GLY LYS ARG GLU VAL LEU PRO PRO VAL ALA SEQRES 6 A 330 GLY LEU SER VAL ILE GLU GLY SER VAL THR ASP ALA GLY SEQRES 7 A 330 LEU LEU GLU ARG ALA PHE ASP SER PHE LYS PRO THR HIS SEQRES 8 A 330 VAL VAL HIS SER ALA ALA ALA TYR LYS ASP PRO ASP ASP SEQRES 9 A 330 TRP ALA GLU ASP ALA ALA THR ASN VAL GLN GLY SER ILE SEQRES 10 A 330 ASN VAL ALA LYS ALA ALA SER LYS ALA GLY VAL LYS ARG SEQRES 11 A 330 LEU LEU ASN PHE GLN THR ALA LEU CYS TYR GLY ARG PRO SEQRES 12 A 330 ALA THR VAL PRO ILE PRO ILE ASP SER PRO THR ALA PRO SEQRES 13 A 330 PHE THR SER TYR GLY ILE SER LYS THR ALA GLY GLU ALA SEQRES 14 A 330 PHE LEU MET MET SER ASP VAL PRO VAL VAL SER LEU ARG SEQRES 15 A 330 LEU ALA ASN VAL THR GLY PRO ARG LEU ALA ILE GLY PRO SEQRES 16 A 330 ILE PRO THR PHE TYR LYS ARG LEU LYS ALA GLY GLN LYS SEQRES 17 A 330 CYS PHE CYS SER ASP THR VAL ARG ASP PHE LEU ASP MET SEQRES 18 A 330 SER ASP PHE LEU ALA ILE ALA ASP LEU SER LEU GLN GLU SEQRES 19 A 330 GLY ARG PRO THR GLY VAL PHE ASN VAL SER THR GLY GLU SEQRES 20 A 330 GLY HIS SER ILE LYS GLU VAL PHE ASP VAL VAL LEU ASP SEQRES 21 A 330 TYR VAL GLY ALA THR LEU ALA GLU PRO VAL PRO VAL VAL SEQRES 22 A 330 ALA PRO GLY ALA ASP ASP VAL PRO SER VAL VAL LEU ASP SEQRES 23 A 330 PRO SER LYS THR GLU THR GLU PHE GLY TRP LYS ALA LYS SEQRES 24 A 330 VAL ASP PHE LYS ASP THR ILE THR GLY GLN LEU ALA TRP SEQRES 25 A 330 TYR ASP LYS TYR GLY VAL THR ASP ILE PHE SER HIS LEU SEQRES 26 A 330 SER ALA PRO LYS THR SEQRES 1 B 330 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 330 LEU VAL PRO ARG GLY SER HIS MET ARG ILE LEU ILE THR SEQRES 3 B 330 GLY GLY ALA GLY CYS LEU GLY SER ASN LEU ILE GLU HIS SEQRES 4 B 330 TRP LEU PRO GLN GLY HIS GLU ILE LEU VAL ILE ASP ASN SEQRES 5 B 330 PHE ALA THR GLY LYS ARG GLU VAL LEU PRO PRO VAL ALA SEQRES 6 B 330 GLY LEU SER VAL ILE GLU GLY SER VAL THR ASP ALA GLY SEQRES 7 B 330 LEU LEU GLU ARG ALA PHE ASP SER PHE LYS PRO THR HIS SEQRES 8 B 330 VAL VAL HIS SER ALA ALA ALA TYR LYS ASP PRO ASP ASP SEQRES 9 B 330 TRP ALA GLU ASP ALA ALA THR ASN VAL GLN GLY SER ILE SEQRES 10 B 330 ASN VAL ALA LYS ALA ALA SER LYS ALA GLY VAL LYS ARG SEQRES 11 B 330 LEU LEU ASN PHE GLN THR ALA LEU CYS TYR GLY ARG PRO SEQRES 12 B 330 ALA THR VAL PRO ILE PRO ILE ASP SER PRO THR ALA PRO SEQRES 13 B 330 PHE THR SER TYR GLY ILE SER LYS THR ALA GLY GLU ALA SEQRES 14 B 330 PHE LEU MET MET SER ASP VAL PRO VAL VAL SER LEU ARG SEQRES 15 B 330 LEU ALA ASN VAL THR GLY PRO ARG LEU ALA ILE GLY PRO SEQRES 16 B 330 ILE PRO THR PHE TYR LYS ARG LEU LYS ALA GLY GLN LYS SEQRES 17 B 330 CYS PHE CYS SER ASP THR VAL ARG ASP PHE LEU ASP MET SEQRES 18 B 330 SER ASP PHE LEU ALA ILE ALA ASP LEU SER LEU GLN GLU SEQRES 19 B 330 GLY ARG PRO THR GLY VAL PHE ASN VAL SER THR GLY GLU SEQRES 20 B 330 GLY HIS SER ILE LYS GLU VAL PHE ASP VAL VAL LEU ASP SEQRES 21 B 330 TYR VAL GLY ALA THR LEU ALA GLU PRO VAL PRO VAL VAL SEQRES 22 B 330 ALA PRO GLY ALA ASP ASP VAL PRO SER VAL VAL LEU ASP SEQRES 23 B 330 PRO SER LYS THR GLU THR GLU PHE GLY TRP LYS ALA LYS SEQRES 24 B 330 VAL ASP PHE LYS ASP THR ILE THR GLY GLN LEU ALA TRP SEQRES 25 B 330 TYR ASP LYS TYR GLY VAL THR ASP ILE PHE SER HIS LEU SEQRES 26 B 330 SER ALA PRO LYS THR
HET MG A 501 1 HET NAD B 401 44 HET NAD A 401 44
HETNAM MG MAGNESIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE
FORMUL 3 MG MG 2+ FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 HOH *316(H2 O)
HELIX 1 1 GLY A 10 LEU A 21 1 12 HELIX 2 2 PRO A 22 GLY A 24 5 3 HELIX 3 3 LYS A 37 LEU A 41 5 5 HELIX 4 4 ASP A 56 LYS A 68 1 13 HELIX 5 5 ASP A 84 VAL A 93 1 10 HELIX 6 6 VAL A 93 ALA A 106 1 14 HELIX 7 7 LEU A 118 GLY A 121 5 4 HELIX 8 8 THR A 138 MET A 152 1 15 HELIX 9 9 GLY A 174 ALA A 185 1 12 HELIX 10 10 MET A 201 LEU A 212 1 12 HELIX 11 11 ILE A 231 GLY A 243 1 13 HELIX 12 12 PRO A 267 GLY A 275 1 9 HELIX 13 13 ASP A 281 GLY A 297 1 17 HELIX 14 14 GLY B 10 LEU B 21 1 12 HELIX 15 15 PRO B 22 GLY B 24 5 3 HELIX 16 16 LYS B 37 LEU B 41 5 5 HELIX 17 17 ASP B 56 LYS B 68 1 13 HELIX 18 18 ASP B 84 VAL B 93 1 10 HELIX 19 19 VAL B 93 GLY B 107 1 15 HELIX 20 20 LEU B 118 GLY B 121 5 4 HELIX 21 21 THR B 138 MET B 152 1 15 HELIX 22 22 GLY B 174 ALA B 185 1 12 HELIX 23 23 MET B 201 LEU B 212 1 12 HELIX 24 24 ILE B 231 GLY B 243 1 13 HELIX 25 25 PRO B 267 GLY B 275 1 9 HELIX 26 26 ASP B 281 GLY B 297 1 17
SHEET 1 A 7 LEU A 47 GLU A 51 0 SHEET 2 A 7 GLU A 26 ASP A 31 1 N VAL A 29 O ILE A 50 SHEET 3 A 7 ARG A 2 THR A 6 1 N ILE A 5 O LEU A 28 SHEET 4 A 7 HIS A 71 HIS A 74 1 O VAL A 73 N LEU A 4 SHEET 5 A 7 ARG A 110 THR A 116 1 O LEU A 112 N HIS A 74 SHEET 6 A 7 VAL A 158 LEU A 163 1 O LEU A 161 N GLN A 115 SHEET 7 A 7 GLY A 219 VAL A 223 1 O PHE A 221 N ARG A 162 SHEET 1 B 2 ASN A 165 THR A 167 0 SHEET 2 B 2 PHE A 198 ASP A 200 1 O LEU A 199 N THR A 167 SHEET 1 C 2 CYS A 191 SER A 192 0 SHEET 2 C 2 VAL A 252 VAL A 253 1 O VAL A 253 N CYS A 191 SHEET 1 D 3 HIS A 229 SER A 230 0 SHEET 2 D 3 VAL A 195 ARG A 196 -1 N ARG A 196 O HIS A 229 SHEET 3 D 3 SER A 262 VAL A 263 1 O VAL A 263 N VAL A 195 SHEET 1 E 7 LEU B 47 GLU B 51 0 SHEET 2 E 7 GLU B 26 ASP B 31 1 N VAL B 29 O SER B 48 SHEET 3 E 7 ARG B 2 THR B 6 1 N ILE B 3 O GLU B 26 SHEET 4 E 7 HIS B 71 HIS B 74 1 O HIS B 71 N LEU B 4 SHEET 5 E 7 ARG B 110 THR B 116 1 O LEU B 112 N HIS B 74 SHEET 6 E 7 VAL B 158 LEU B 163 1 O LEU B 161 N GLN B 115 SHEET 7 E 7 GLY B 219 VAL B 223 1 O PHE B 221 N ARG B 162 SHEET 1 F 2 ASN B 165 THR B 167 0 SHEET 2 F 2 PHE B 198 ASP B 200 1 O LEU B 199 N THR B 167 SHEET 1 G 2 VAL B 195 ARG B 196 0 SHEET 2 G 2 HIS B 229 SER B 230 -1 O HIS B 229 N ARG B 196
CISPEP 1 VAL A 126 PRO A 127 0 -6.61 CISPEP 2 VAL B -5 PRO B -4 0 -3.68 CISPEP 3 VAL B 126 PRO B 127 0 -4.31 CISPEP 4 ALA B 254 PRO B 255 0 -12.21
SITE 1 AC1 1 TYR A 140 SITE 1 AC2 32 GLY B 7 ALA B 9 GLY B 10 CYS B 11 SITE 2 AC2 32 LEU B 12 ASP B 31 ASN B 32 PHE B 33 SITE 3 AC2 32 ALA B 34 THR B 35 GLY B 36 GLY B 52 SITE 4 AC2 32 SER B 53 VAL B 54 SER B 75 ALA B 76 SITE 5 AC2 32 ALA B 77 TYR B 79 THR B 91 PHE B 114 SITE 6 AC2 32 GLN B 115 THR B 116 TYR B 140 LYS B 144 SITE 7 AC2 32 LEU B 163 ALA B 164 ASN B 165 VAL B 166 SITE 8 AC2 32 HOH B 409 HOH B 417 HOH B 454 HOH B 521 SITE 1 AC3 33 GLY A 7 ALA A 9 GLY A 10 CYS A 11 SITE 2 AC3 33 LEU A 12 ASP A 31 ASN A 32 PHE A 33 SITE 3 AC3 33 ALA A 34 THR A 35 GLY A 36 GLY A 52 SITE 4 AC3 33 SER A 53 VAL A 54 SER A 75 ALA A 76 SITE 5 AC3 33 ALA A 77 TYR A 79 THR A 91 PHE A 114 SITE 6 AC3 33 GLN A 115 THR A 116 TYR A 140 LYS A 144 SITE 7 AC3 33 LEU A 163 ALA A 164 VAL A 166 HOH A 507 SITE 8 AC3 33 HOH A 538 HOH A 587 HOH A 590 HOH A 639 SITE 9 AC3 33 HOH A 643
CRYST1 192.041 49.760 76.023 90.00 101.13 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005207 0.000000 0.001025 0.00000
SCALE2 0.000000 0.020096 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013406 0.00000