10 20 30 40 50 60 70 80 2PRZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 04-MAY-07 2PRZ
TITLE S. CEREVISIAE OROTATE PHOSPHORIBOSYLTRANSFERASE COMPLEXED TITLE 2 WITH OMP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTATE PHOSPHORIBOSYLTRANSFERASE 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: OPRT 1, OPRTASE 1; COMPND 5 EC: 2.4.2.10; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: URA5, PYR5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CS101-4UI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PTRC99A; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PREJ2
KEYWDS ALPHA BETA, OPRTASE-OMP COMPLEX, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR L.GONZALEZ-SEGURA,T.D.HURLEY,R.W.MCCLARD
REVDAT 2 24-FEB-09 2PRZ 1 VERSN REVDAT 1 15-JAN-08 2PRZ 0
JRNL AUTH L.GONZALEZ-SEGURA,J.F.WITTE,R.W.MCCLARD,T.D.HURLEY JRNL TITL TERNARY COMPLEX FORMATION AND INDUCED ASYMMETRY IN JRNL TITL 2 OROTATE PHOSPHORIBOSYLTRANSFERASE. JRNL REF BIOCHEMISTRY V. 46 14075 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 18020427 JRNL DOI 10.1021/BI701023Z
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 73711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3686 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : -2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.182 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6852 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9257 ; 1.046 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 855 ; 5.034 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;33.591 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1238 ;14.849 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.750 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1090 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4968 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3407 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4865 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 519 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.125 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4420 ; 0.499 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6845 ; 0.870 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2780 ; 1.081 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2412 ; 1.745 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2PRZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB042717.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.04800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42200 REMARK 200 R SYM FOR SHELL (I) : 0.37600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2PRY (S. CEREVISIAE OPRTASE APO FORM) REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 6000, 0.08M MAGNESIUM REMARK 280 ACETATE, 0.1M TRIS HCL, 2.5MM MAGNESIUM CHLORIDE, 5.0MM OMP, REMARK 280 PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.03150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.99750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.73750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.99750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.03150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.73750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 PRO A 1 REMARK 465 ILE A 2 REMARK 465 MET A 3 REMARK 465 LYS A 109 REMARK 465 ASP A 110 REMARK 465 HIS A 111 REMARK 465 GLY A 112 REMARK 465 GLU A 113 REMARK 465 GLY A 114 REMARK 465 ALA A 225 REMARK 465 MET B 0 REMARK 465 PRO B 1 REMARK 465 LYS B 109 REMARK 465 ASP B 110 REMARK 465 HIS B 111 REMARK 465 GLY B 112 REMARK 465 GLU B 113 REMARK 465 GLY B 114 REMARK 465 GLY B 115 REMARK 465 ALA B 225 REMARK 465 MET C 0 REMARK 465 PRO C 1 REMARK 465 ILE C 2 REMARK 465 MET C 3 REMARK 465 LYS C 109 REMARK 465 ASP C 110 REMARK 465 HIS C 111 REMARK 465 GLY C 112 REMARK 465 GLU C 113 REMARK 465 GLY C 114 REMARK 465 ALA C 225 REMARK 465 MET D 0 REMARK 465 PRO D 1 REMARK 465 LYS D 109 REMARK 465 ASP D 110 REMARK 465 HIS D 111 REMARK 465 GLY D 112 REMARK 465 GLU D 113 REMARK 465 GLY D 114 REMARK 465 ALA D 225
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 135 -75.91 -115.80 REMARK 500 LEU A 202 32.43 -99.28 REMARK 500 THR B 135 -76.35 -113.40 REMARK 500 GLU B 203 -121.72 46.45 REMARK 500 THR C 135 -72.58 -116.59 REMARK 500 THR D 135 -77.54 -107.66 REMARK 500 GLU D 203 -121.52 45.74 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 2 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 225 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 225 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OMP A 450 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OMP B 550 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OMP C 650 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OMP D 750
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PRY RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE APO FORM REMARK 900 RELATED ID: 2PS1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ORO AND PRPP
DBREF 2PRZ A 0 225 UNP P13298 PYRE_YEAST 1 226 DBREF 2PRZ B 0 225 UNP P13298 PYRE_YEAST 1 226 DBREF 2PRZ C 0 225 UNP P13298 PYRE_YEAST 1 226 DBREF 2PRZ D 0 225 UNP P13298 PYRE_YEAST 1 226
SEQRES 1 A 226 MET PRO ILE MET LEU GLU ASP TYR GLN LYS ASN PHE LEU SEQRES 2 A 226 GLU LEU ALA ILE GLU CYS GLN ALA LEU ARG PHE GLY SER SEQRES 3 A 226 PHE LYS LEU LYS SER GLY ARG GLU SER PRO TYR PHE PHE SEQRES 4 A 226 ASN LEU GLY LEU PHE ASN THR GLY LYS LEU LEU SER ASN SEQRES 5 A 226 LEU ALA THR ALA TYR ALA ILE ALA ILE ILE GLN SER ASP SEQRES 6 A 226 LEU LYS PHE ASP VAL ILE PHE GLY PRO ALA TYR LYS GLY SEQRES 7 A 226 ILE PRO LEU ALA ALA ILE VAL CYS VAL LYS LEU ALA GLU SEQRES 8 A 226 ILE GLY GLY SER LYS PHE GLN ASN ILE GLN TYR ALA PHE SEQRES 9 A 226 ASN ARG LYS GLU ALA LYS ASP HIS GLY GLU GLY GLY ILE SEQRES 10 A 226 ILE VAL GLY SER ALA LEU GLU ASN LYS ARG ILE LEU ILE SEQRES 11 A 226 ILE ASP ASP VAL MET THR ALA GLY THR ALA ILE ASN GLU SEQRES 12 A 226 ALA PHE GLU ILE ILE SER ASN ALA LYS GLY GLN VAL VAL SEQRES 13 A 226 GLY SER ILE ILE ALA LEU ASP ARG GLN GLU VAL VAL SER SEQRES 14 A 226 THR ASP ASP LYS GLU GLY LEU SER ALA THR GLN THR VAL SEQRES 15 A 226 SER LYS LYS TYR GLY ILE PRO VAL LEU SER ILE VAL SER SEQRES 16 A 226 LEU ILE HIS ILE ILE THR TYR LEU GLU GLY ARG ILE THR SEQRES 17 A 226 ALA GLU GLU LYS SER LYS ILE GLU GLN TYR LEU GLN THR SEQRES 18 A 226 TYR GLY ALA SER ALA SEQRES 1 B 226 MET PRO ILE MET LEU GLU ASP TYR GLN LYS ASN PHE LEU SEQRES 2 B 226 GLU LEU ALA ILE GLU CYS GLN ALA LEU ARG PHE GLY SER SEQRES 3 B 226 PHE LYS LEU LYS SER GLY ARG GLU SER PRO TYR PHE PHE SEQRES 4 B 226 ASN LEU GLY LEU PHE ASN THR GLY LYS LEU LEU SER ASN SEQRES 5 B 226 LEU ALA THR ALA TYR ALA ILE ALA ILE ILE GLN SER ASP SEQRES 6 B 226 LEU LYS PHE ASP VAL ILE PHE GLY PRO ALA TYR LYS GLY SEQRES 7 B 226 ILE PRO LEU ALA ALA ILE VAL CYS VAL LYS LEU ALA GLU SEQRES 8 B 226 ILE GLY GLY SER LYS PHE GLN ASN ILE GLN TYR ALA PHE SEQRES 9 B 226 ASN ARG LYS GLU ALA LYS ASP HIS GLY GLU GLY GLY ILE SEQRES 10 B 226 ILE VAL GLY SER ALA LEU GLU ASN LYS ARG ILE LEU ILE SEQRES 11 B 226 ILE ASP ASP VAL MET THR ALA GLY THR ALA ILE ASN GLU SEQRES 12 B 226 ALA PHE GLU ILE ILE SER ASN ALA LYS GLY GLN VAL VAL SEQRES 13 B 226 GLY SER ILE ILE ALA LEU ASP ARG GLN GLU VAL VAL SER SEQRES 14 B 226 THR ASP ASP LYS GLU GLY LEU SER ALA THR GLN THR VAL SEQRES 15 B 226 SER LYS LYS TYR GLY ILE PRO VAL LEU SER ILE VAL SER SEQRES 16 B 226 LEU ILE HIS ILE ILE THR TYR LEU GLU GLY ARG ILE THR SEQRES 17 B 226 ALA GLU GLU LYS SER LYS ILE GLU GLN TYR LEU GLN THR SEQRES 18 B 226 TYR GLY ALA SER ALA SEQRES 1 C 226 MET PRO ILE MET LEU GLU ASP TYR GLN LYS ASN PHE LEU SEQRES 2 C 226 GLU LEU ALA ILE GLU CYS GLN ALA LEU ARG PHE GLY SER SEQRES 3 C 226 PHE LYS LEU LYS SER GLY ARG GLU SER PRO TYR PHE PHE SEQRES 4 C 226 ASN LEU GLY LEU PHE ASN THR GLY LYS LEU LEU SER ASN SEQRES 5 C 226 LEU ALA THR ALA TYR ALA ILE ALA ILE ILE GLN SER ASP SEQRES 6 C 226 LEU LYS PHE ASP VAL ILE PHE GLY PRO ALA TYR LYS GLY SEQRES 7 C 226 ILE PRO LEU ALA ALA ILE VAL CYS VAL LYS LEU ALA GLU SEQRES 8 C 226 ILE GLY GLY SER LYS PHE GLN ASN ILE GLN TYR ALA PHE SEQRES 9 C 226 ASN ARG LYS GLU ALA LYS ASP HIS GLY GLU GLY GLY ILE SEQRES 10 C 226 ILE VAL GLY SER ALA LEU GLU ASN LYS ARG ILE LEU ILE SEQRES 11 C 226 ILE ASP ASP VAL MET THR ALA GLY THR ALA ILE ASN GLU SEQRES 12 C 226 ALA PHE GLU ILE ILE SER ASN ALA LYS GLY GLN VAL VAL SEQRES 13 C 226 GLY SER ILE ILE ALA LEU ASP ARG GLN GLU VAL VAL SER SEQRES 14 C 226 THR ASP ASP LYS GLU GLY LEU SER ALA THR GLN THR VAL SEQRES 15 C 226 SER LYS LYS TYR GLY ILE PRO VAL LEU SER ILE VAL SER SEQRES 16 C 226 LEU ILE HIS ILE ILE THR TYR LEU GLU GLY ARG ILE THR SEQRES 17 C 226 ALA GLU GLU LYS SER LYS ILE GLU GLN TYR LEU GLN THR SEQRES 18 C 226 TYR GLY ALA SER ALA SEQRES 1 D 226 MET PRO ILE MET LEU GLU ASP TYR GLN LYS ASN PHE LEU SEQRES 2 D 226 GLU LEU ALA ILE GLU CYS GLN ALA LEU ARG PHE GLY SER SEQRES 3 D 226 PHE LYS LEU LYS SER GLY ARG GLU SER PRO TYR PHE PHE SEQRES 4 D 226 ASN LEU GLY LEU PHE ASN THR GLY LYS LEU LEU SER ASN SEQRES 5 D 226 LEU ALA THR ALA TYR ALA ILE ALA ILE ILE GLN SER ASP SEQRES 6 D 226 LEU LYS PHE ASP VAL ILE PHE GLY PRO ALA TYR LYS GLY SEQRES 7 D 226 ILE PRO LEU ALA ALA ILE VAL CYS VAL LYS LEU ALA GLU SEQRES 8 D 226 ILE GLY GLY SER LYS PHE GLN ASN ILE GLN TYR ALA PHE SEQRES 9 D 226 ASN ARG LYS GLU ALA LYS ASP HIS GLY GLU GLY GLY ILE SEQRES 10 D 226 ILE VAL GLY SER ALA LEU GLU ASN LYS ARG ILE LEU ILE SEQRES 11 D 226 ILE ASP ASP VAL MET THR ALA GLY THR ALA ILE ASN GLU SEQRES 12 D 226 ALA PHE GLU ILE ILE SER ASN ALA LYS GLY GLN VAL VAL SEQRES 13 D 226 GLY SER ILE ILE ALA LEU ASP ARG GLN GLU VAL VAL SER SEQRES 14 D 226 THR ASP ASP LYS GLU GLY LEU SER ALA THR GLN THR VAL SEQRES 15 D 226 SER LYS LYS TYR GLY ILE PRO VAL LEU SER ILE VAL SER SEQRES 16 D 226 LEU ILE HIS ILE ILE THR TYR LEU GLU GLY ARG ILE THR SEQRES 17 D 226 ALA GLU GLU LYS SER LYS ILE GLU GLN TYR LEU GLN THR SEQRES 18 D 226 TYR GLY ALA SER ALA
HET CL A 1 1 HET CL C 2 1 HET CL D 225 1 HET CL B 225 1 HET OMP A 450 24 HET OMP B 550 24 HET OMP C 650 24 HET OMP D 750 24
HETNAM CL CHLORIDE ION HETNAM OMP OROTIDINE-5'-MONOPHOSPHATE
FORMUL 5 CL 4(CL 1-) FORMUL 9 OMP 4(C10 H13 N2 O11 P) FORMUL 13 HOH *445(H2 O)
HELIX 1 1 GLU A 5 CYS A 18 1 14 HELIX 2 2 LEU A 40 PHE A 43 5 4 HELIX 3 3 THR A 45 SER A 63 1 19 HELIX 4 4 LYS A 76 GLY A 92 1 17 HELIX 5 5 GLY A 93 GLN A 97 5 5 HELIX 6 6 GLY A 137 ALA A 150 1 14 HELIX 7 7 SER A 176 GLY A 186 1 11 HELIX 8 8 LEU A 195 LEU A 202 1 8 HELIX 9 9 THR A 207 GLY A 222 1 16 HELIX 10 10 GLU B 5 CYS B 18 1 14 HELIX 11 11 LEU B 40 PHE B 43 5 4 HELIX 12 12 THR B 45 ASP B 64 1 20 HELIX 13 13 LYS B 76 GLY B 92 1 17 HELIX 14 14 GLY B 93 GLN B 97 5 5 HELIX 15 15 GLY B 137 ALA B 150 1 14 HELIX 16 16 SER B 176 GLY B 186 1 11 HELIX 17 17 LEU B 195 GLU B 203 1 9 HELIX 18 18 GLY B 204 ILE B 206 5 3 HELIX 19 19 THR B 207 GLY B 222 1 16 HELIX 20 20 GLU C 5 CYS C 18 1 14 HELIX 21 21 LEU C 40 PHE C 43 5 4 HELIX 22 22 THR C 45 SER C 63 1 19 HELIX 23 23 LYS C 76 GLY C 92 1 17 HELIX 24 24 GLY C 93 GLN C 97 5 5 HELIX 25 25 GLY C 137 ALA C 150 1 14 HELIX 26 26 SER C 176 GLY C 186 1 11 HELIX 27 27 LEU C 195 LEU C 202 1 8 HELIX 28 28 THR C 207 GLY C 222 1 16 HELIX 29 29 GLU D 5 CYS D 18 1 14 HELIX 30 30 LEU D 40 PHE D 43 5 4 HELIX 31 31 THR D 45 ASP D 64 1 20 HELIX 32 32 LYS D 76 GLY D 92 1 17 HELIX 33 33 GLY D 93 GLN D 97 5 5 HELIX 34 34 GLY D 137 ALA D 150 1 14 HELIX 35 35 SER D 176 TYR D 185 1 10 HELIX 36 36 LEU D 195 GLU D 203 1 9 HELIX 37 37 GLY D 204 ILE D 206 5 3 HELIX 38 38 THR D 207 GLY D 222 1 16
SHEET 1 A 2 LEU A 21 LYS A 27 0 SHEET 2 A 2 GLU A 33 PHE A 38 -1 O SER A 34 N PHE A 26 SHEET 1 B 6 ILE A 117 VAL A 118 0 SHEET 2 B 6 GLN A 100 ASN A 104 -1 N PHE A 103 O VAL A 118 SHEET 3 B 6 VAL A 69 GLY A 72 1 N ILE A 70 O GLN A 100 SHEET 4 B 6 ARG A 126 MET A 134 1 O LEU A 128 N PHE A 71 SHEET 5 B 6 GLN A 153 ASP A 162 1 O ILE A 158 N ILE A 129 SHEET 6 B 6 VAL A 189 SER A 194 1 O LEU A 190 N SER A 157 SHEET 1 C 2 LEU B 21 LYS B 27 0 SHEET 2 C 2 GLU B 33 PHE B 38 -1 O SER B 34 N PHE B 26 SHEET 1 D 6 ILE B 117 VAL B 118 0 SHEET 2 D 6 GLN B 100 ASN B 104 -1 N PHE B 103 O VAL B 118 SHEET 3 D 6 VAL B 69 PHE B 71 1 N ILE B 70 O GLN B 100 SHEET 4 D 6 ARG B 126 MET B 134 1 O LEU B 128 N VAL B 69 SHEET 5 D 6 GLN B 153 ASP B 162 1 O ILE B 158 N ILE B 129 SHEET 6 D 6 VAL B 189 SER B 194 1 O LEU B 190 N SER B 157 SHEET 1 E 2 LEU C 21 LYS C 27 0 SHEET 2 E 2 GLU C 33 PHE C 38 -1 O SER C 34 N PHE C 26 SHEET 1 F 6 ILE C 117 VAL C 118 0 SHEET 2 F 6 GLN C 100 ASN C 104 -1 N PHE C 103 O VAL C 118 SHEET 3 F 6 VAL C 69 GLY C 72 1 N ILE C 70 O GLN C 100 SHEET 4 F 6 ARG C 126 MET C 134 1 O LEU C 128 N PHE C 71 SHEET 5 F 6 GLN C 153 ASP C 162 1 O VAL C 155 N ILE C 127 SHEET 6 F 6 VAL C 189 SER C 194 1 O LEU C 190 N SER C 157 SHEET 1 G 2 LEU D 21 LYS D 27 0 SHEET 2 G 2 GLU D 33 PHE D 38 -1 O SER D 34 N PHE D 26 SHEET 1 H 6 ILE D 117 VAL D 118 0 SHEET 2 H 6 GLN D 100 ASN D 104 -1 N PHE D 103 O VAL D 118 SHEET 3 H 6 VAL D 69 GLY D 72 1 N ILE D 70 O GLN D 100 SHEET 4 H 6 ARG D 126 MET D 134 1 O LEU D 128 N PHE D 71 SHEET 5 H 6 GLN D 153 ASP D 162 1 O GLN D 153 N ILE D 127 SHEET 6 H 6 VAL D 189 SER D 194 1 O LEU D 190 N SER D 157
CISPEP 1 ALA A 74 TYR A 75 0 -0.76 CISPEP 2 ALA B 74 TYR B 75 0 0.01 CISPEP 3 ALA C 74 TYR C 75 0 -2.18 CISPEP 4 ALA D 74 TYR D 75 0 -3.44
SITE 1 AC1 3 TYR A 75 LYS A 76 ARG B 105 SITE 1 AC2 2 TYR C 75 LYS C 76 SITE 1 AC3 3 ARG C 105 TYR D 75 LYS D 76 SITE 1 AC4 3 ARG A 105 TYR B 75 LYS B 76 SITE 1 AC5 19 LEU A 28 LYS A 29 PHE A 37 PHE A 38 SITE 2 AC5 19 ASP A 132 VAL A 133 MET A 134 THR A 135 SITE 3 AC5 19 ALA A 136 GLY A 137 THR A 138 ALA A 139 SITE 4 AC5 19 ARG A 163 HOH A 453 HOH A 457 HOH A 458 SITE 5 AC5 19 HOH A 465 HOH A 482 HOH A 501 SITE 1 AC6 17 LEU B 28 LYS B 29 PHE B 37 PHE B 38 SITE 2 AC6 17 ASP B 132 VAL B 133 MET B 134 THR B 135 SITE 3 AC6 17 ALA B 136 GLY B 137 THR B 138 ALA B 139 SITE 4 AC6 17 ARG B 163 HOH B 554 HOH B 559 HOH B 560 SITE 5 AC6 17 HOH B 577 SITE 1 AC7 19 LEU C 28 LYS C 29 PHE C 37 PHE C 38 SITE 2 AC7 19 ASP C 132 VAL C 133 MET C 134 THR C 135 SITE 3 AC7 19 ALA C 136 GLY C 137 THR C 138 ALA C 139 SITE 4 AC7 19 ARG C 163 HOH C 652 HOH C 654 HOH C 671 SITE 5 AC7 19 HOH C 698 HOH C 718 HOH C 728 SITE 1 AC8 19 LEU D 28 LYS D 29 PHE D 37 PHE D 38 SITE 2 AC8 19 ASP D 132 VAL D 133 MET D 134 THR D 135 SITE 3 AC8 19 ALA D 136 GLY D 137 THR D 138 ALA D 139 SITE 4 AC8 19 ARG D 163 HOH D 753 HOH D 754 HOH D 756 SITE 5 AC8 19 HOH D 787 HOH D 815 HOH D 835
CRYST1 86.063 99.475 111.995 90.00 90.00 90.00 P 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011619 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010053 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008929 0.00000