10 20 30 40 50 60 70 80 2PI5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE/DNA 12-APR-07 2PI5
TITLE T7 RNA POLYMERASE COMPLEXED WITH A PHI10 PROMOTER
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'- COMPND 3 D(*CP*TP*TP*C*CP*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP*AP* COMPND 4 TP*TP*A)-3'; COMPND 5 CHAIN: T; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*T)- COMPND 9 3'; COMPND 10 CHAIN: P; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA-DIRECTED RNA POLYMERASE; COMPND 14 CHAIN: A; COMPND 15 EC: 2.7.7.6; COMPND 16 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 7 ORGANISM_TAXID: 10760; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS T7 RNA POLYMERASE, INITIATING NUCLEOITES, TRANSFERASE/DNA KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR W.P.KENNEDY,J.R.MOMAND,Y.W.YIN
REVDAT 2 24-FEB-09 2PI5 1 VERSN REVDAT 1 19-JUN-07 2PI5 0
JRNL AUTH W.P.KENNEDY,J.R.MOMAND,Y.W.YIN JRNL TITL MECHANISM FOR DE NOVO RNA SYNTHESIS AND INITIATING JRNL TITL 2 NUCLEOTIDE SPECIFICITY BY T7 RNA POLYMERASE. JRNL REF J.MOL.BIOL. V. 370 256 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17512007 JRNL DOI 10.1016/J.JMB.2007.03.041
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 310854.160 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 27222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1233 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3395 REMARK 3 BIN R VALUE (WORKING SET) : 0.4010 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 69 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6803 REMARK 3 NUCLEIC ACID ATOMS : 648 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.13000 REMARK 3 B22 (A**2) : -7.12000 REMARK 3 B33 (A**2) : 2.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 0.74 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.70 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.04 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 38.53 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED
REMARK 4 REMARK 4 2PI5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB042400.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29104 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 1.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, 200 MM LI2SO4, 20% REMARK 280 PEG 8000, 5% GLYCEROL, 15 MM MAGNESIUM ACETATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 112.22500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.89550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 112.22500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.89550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC T 1 REMARK 465 DT T 2 REMARK 465 DT T 3 REMARK 465 DC T 4 REMARK 465 GLU A 56 REMARK 465 ARG A 57 REMARK 465 GLN A 58 REMARK 465 LEU A 59 REMARK 465 LYS A 60 REMARK 465 ALA A 61 REMARK 465 GLY A 62 REMARK 465 GLU A 63 REMARK 465 VAL A 64 REMARK 465 ALA A 65 REMARK 465 ASP A 66 REMARK 465 ASN A 67 REMARK 465 ALA A 68 REMARK 465 ALA A 69 REMARK 465 ALA A 70 REMARK 465 LYS A 71
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC T 5 P OP1 OP2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 537 OG SER A 813 2.11 REMARK 500 NH1 ARG A 829 O SER A 878 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA P 103 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC P 106 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -60.82 74.30 REMARK 500 TYR A 28 -13.59 63.49 REMARK 500 GLU A 48 -70.24 -49.56 REMARK 500 PHE A 103 -71.60 -44.01 REMARK 500 GLN A 104 -47.58 -25.14 REMARK 500 PHE A 151 -27.97 52.89 REMARK 500 GLU A 168 -178.92 43.57 REMARK 500 GLN A 169 98.24 59.40 REMARK 500 VAL A 174 -79.55 -67.12 REMARK 500 HIS A 176 -88.64 -32.29 REMARK 500 VAL A 177 116.23 61.48 REMARK 500 TYR A 178 70.34 -63.45 REMARK 500 LYS A 179 -159.55 -97.29 REMARK 500 MET A 183 136.44 -39.80 REMARK 500 LEU A 196 99.82 -68.67 REMARK 500 GLU A 199 86.17 55.67 REMARK 500 ALA A 234 98.13 -60.93 REMARK 500 PRO A 248 -76.19 -39.99 REMARK 500 PRO A 266 161.53 -46.21 REMARK 500 PRO A 270 -160.40 -60.56 REMARK 500 ALA A 288 146.56 -37.68 REMARK 500 TYR A 312 97.01 92.17 REMARK 500 MET A 313 71.06 -154.01 REMARK 500 VAL A 340 -64.63 -90.45 REMARK 500 THR A 342 21.47 -72.19 REMARK 500 HIS A 346 74.47 -160.01 REMARK 500 GLU A 350 29.79 -64.85 REMARK 500 PRO A 364 12.38 -64.28 REMARK 500 GLU A 365 -27.04 69.77 REMARK 500 GLU A 372 -9.82 -175.24 REMARK 500 ALA A 373 -95.52 -51.40 REMARK 500 LEU A 374 44.88 -74.23 REMARK 500 ARG A 425 131.05 -25.39 REMARK 500 PRO A 434 -7.96 -59.43 REMARK 500 VAL A 470 75.28 -107.57 REMARK 500 LYS A 494 -70.44 -59.28 REMARK 500 PRO A 508 -74.87 -55.40 REMARK 500 HIS A 524 -1.04 -152.15 REMARK 500 SER A 541 160.98 -49.80 REMARK 500 ASN A 560 7.81 161.74 REMARK 500 ILE A 587 -70.09 -72.58 REMARK 500 ASN A 588 -131.76 -85.65 REMARK 500 THR A 590 166.40 -48.70 REMARK 500 VAL A 594 -108.49 -62.21 REMARK 500 VAL A 595 -154.32 -151.18 REMARK 500 THR A 602 119.08 61.23 REMARK 500 SER A 606 -175.30 -52.46 REMARK 500 GLU A 607 55.52 32.06 REMARK 500 LYS A 608 40.62 -74.78 REMARK 500 VAL A 609 134.80 -174.75 REMARK 500 LYS A 610 -31.53 -130.37 REMARK 500 LEU A 611 118.62 55.27 REMARK 500 VAL A 625 78.72 60.03 REMARK 500 THR A 626 -167.75 -110.66 REMARK 500 VAL A 629 -5.29 -52.93 REMARK 500 LYS A 631 -78.95 -44.79 REMARK 500 ALA A 638 31.78 -84.68 REMARK 500 LYS A 642 -164.43 -128.80 REMARK 500 ARG A 647 -70.31 -44.60 REMARK 500 THR A 654 -50.00 -139.03 REMARK 500 LYS A 663 -155.58 -91.39 REMARK 500 GLN A 669 75.64 -116.96 REMARK 500 ALA A 691 -71.67 -58.52 REMARK 500 ALA A 708 144.25 -34.34 REMARK 500 LYS A 714 78.23 42.41 REMARK 500 THR A 715 -29.04 179.65 REMARK 500 THR A 745 168.19 171.99 REMARK 500 SER A 767 -142.19 -117.12 REMARK 500 GLU A 768 150.00 -44.05 REMARK 500 ILE A 804 118.82 -37.64 REMARK 500 HIS A 811 -77.04 63.86 REMARK 500 THR A 816 -169.64 -160.77 REMARK 500 ASP A 840 79.04 -111.25 REMARK 500 ASP A 847 7.65 -69.04 REMARK 500 GLN A 848 -65.10 -109.22 REMARK 500 GLN A 852 45.58 -143.51 REMARK 500 LEU A 853 143.05 176.13 REMARK 500 HIS A 854 171.11 66.58 REMARK 500 GLU A 855 -34.68 -154.21 REMARK 500 SER A 856 -81.88 -107.44 REMARK 500 GLN A 857 -87.64 -30.85 REMARK 500 LEU A 858 -75.30 81.70 REMARK 500 ASP A 859 -165.99 -58.33 REMARK 500 MET A 861 -66.70 -135.94 REMARK 500 PRO A 862 -159.17 -46.85 REMARK 500 ALA A 863 58.55 106.88 REMARK 500 LEU A 872 -1.93 -51.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA T 9 0.06 SIDE_CHAIN REMARK 500 DG T 10 0.11 SIDE_CHAIN REMARK 500 DT T 11 0.07 SIDE_CHAIN REMARK 500 DC P 106 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PI4 RELATED DB: PDB REMARK 900 T7RNAP COMPLEXED WITH A PHI10 PROTEIN AND INITIATING GTPS
DBREF 2PI5 A 6 883 UNP P00573 RPOL_BPT7 6 883 DBREF 2PI5 T 1 22 PDB 2PI5 2PI5 1 22 DBREF 2PI5 P 101 114 PDB 2PI5 2PI5 101 114
SEQRES 1 T 22 DC DT DT DC DC DT DA DT DA DG DT DG DA SEQRES 2 T 22 DG DT DC DG DT DA DT DT DA SEQRES 1 P 14 DT DA DA DT DA DC DG DA DC DT DC DA DC SEQRES 2 P 14 DT SEQRES 1 A 878 ILE ALA LYS ASN ASP PHE SER ASP ILE GLU LEU ALA ALA SEQRES 2 A 878 ILE PRO PHE ASN THR LEU ALA ASP HIS TYR GLY GLU ARG SEQRES 3 A 878 LEU ALA ARG GLU GLN LEU ALA LEU GLU HIS GLU SER TYR SEQRES 4 A 878 GLU MET GLY GLU ALA ARG PHE ARG LYS MET PHE GLU ARG SEQRES 5 A 878 GLN LEU LYS ALA GLY GLU VAL ALA ASP ASN ALA ALA ALA SEQRES 6 A 878 LYS PRO LEU ILE THR THR LEU LEU PRO LYS MET ILE ALA SEQRES 7 A 878 ARG ILE ASN ASP TRP PHE GLU GLU VAL LYS ALA LYS ARG SEQRES 8 A 878 GLY LYS ARG PRO THR ALA PHE GLN PHE LEU GLN GLU ILE SEQRES 9 A 878 LYS PRO GLU ALA VAL ALA TYR ILE THR ILE LYS THR THR SEQRES 10 A 878 LEU ALA CYS LEU THR SER ALA ASP ASN THR THR VAL GLN SEQRES 11 A 878 ALA VAL ALA SER ALA ILE GLY ARG ALA ILE GLU ASP GLU SEQRES 12 A 878 ALA ARG PHE GLY ARG ILE ARG ASP LEU GLU ALA LYS HIS SEQRES 13 A 878 PHE LYS LYS ASN VAL GLU GLU GLN LEU ASN LYS ARG VAL SEQRES 14 A 878 GLY HIS VAL TYR LYS LYS ALA PHE MET GLN VAL VAL GLU SEQRES 15 A 878 ALA ASP MET LEU SER LYS GLY LEU LEU GLY GLY GLU ALA SEQRES 16 A 878 TRP SER SER TRP HIS LYS GLU ASP SER ILE HIS VAL GLY SEQRES 17 A 878 VAL ARG CYS ILE GLU MET LEU ILE GLU SER THR GLY MET SEQRES 18 A 878 VAL SER LEU HIS ARG GLN ASN ALA GLY VAL VAL GLY GLN SEQRES 19 A 878 ASP SER GLU THR ILE GLU LEU ALA PRO GLU TYR ALA GLU SEQRES 20 A 878 ALA ILE ALA THR ARG ALA GLY ALA LEU ALA GLY ILE SER SEQRES 21 A 878 PRO MET PHE GLN PRO CYS VAL VAL PRO PRO LYS PRO TRP SEQRES 22 A 878 THR GLY ILE THR GLY GLY GLY TYR TRP ALA ASN GLY ARG SEQRES 23 A 878 ARG PRO LEU ALA LEU VAL ARG THR HIS SER LYS LYS ALA SEQRES 24 A 878 LEU MET ARG TYR GLU ASP VAL TYR MET PRO GLU VAL TYR SEQRES 25 A 878 LYS ALA ILE ASN ILE ALA GLN ASN THR ALA TRP LYS ILE SEQRES 26 A 878 ASN LYS LYS VAL LEU ALA VAL ALA ASN VAL ILE THR LYS SEQRES 27 A 878 TRP LYS HIS CYS PRO VAL GLU ASP ILE PRO ALA ILE GLU SEQRES 28 A 878 ARG GLU GLU LEU PRO MET LYS PRO GLU ASP ILE ASP MET SEQRES 29 A 878 ASN PRO GLU ALA LEU THR ALA TRP LYS ARG ALA ALA ALA SEQRES 30 A 878 ALA VAL TYR ARG LYS ASP LYS ALA ARG LYS SER ARG ARG SEQRES 31 A 878 ILE SER LEU GLU PHE MET LEU GLU GLN ALA ASN LYS PHE SEQRES 32 A 878 ALA ASN HIS LYS ALA ILE TRP PHE PRO TYR ASN MET ASP SEQRES 33 A 878 TRP ARG GLY ARG VAL TYR ALA VAL SER MET PHE ASN PRO SEQRES 34 A 878 GLN GLY ASN ASP MET THR LYS GLY LEU LEU THR LEU ALA SEQRES 35 A 878 LYS GLY LYS PRO ILE GLY LYS GLU GLY TYR TYR TRP LEU SEQRES 36 A 878 LYS ILE HIS GLY ALA ASN CYS ALA GLY VAL ASP LYS VAL SEQRES 37 A 878 PRO PHE PRO GLU ARG ILE LYS PHE ILE GLU GLU ASN HIS SEQRES 38 A 878 GLU ASN ILE MET ALA CYS ALA LYS SER PRO LEU GLU ASN SEQRES 39 A 878 THR TRP TRP ALA GLU GLN ASP SER PRO PHE CYS PHE LEU SEQRES 40 A 878 ALA PHE CYS PHE GLU TYR ALA GLY VAL GLN HIS HIS GLY SEQRES 41 A 878 LEU SER TYR ASN CYS SER LEU PRO LEU ALA PHE ASP GLY SEQRES 42 A 878 SER CYS SER GLY ILE GLN HIS PHE SER ALA MET LEU ARG SEQRES 43 A 878 ASP GLU VAL GLY GLY ARG ALA VAL ASN LEU LEU PRO SER SEQRES 44 A 878 GLU THR VAL GLN ASP ILE TYR GLY ILE VAL ALA LYS LYS SEQRES 45 A 878 VAL ASN GLU ILE LEU GLN ALA ASP ALA ILE ASN GLY THR SEQRES 46 A 878 ASP ASN GLU VAL VAL THR VAL THR ASP GLU ASN THR GLY SEQRES 47 A 878 GLU ILE SER GLU LYS VAL LYS LEU GLY THR LYS ALA LEU SEQRES 48 A 878 ALA GLY GLN TRP LEU ALA TYR GLY VAL THR ARG SER VAL SEQRES 49 A 878 THR LYS ARG SER VAL MET THR LEU ALA TYR GLY SER LYS SEQRES 50 A 878 GLU PHE GLY PHE ARG GLN GLN VAL LEU GLU ASP THR ILE SEQRES 51 A 878 GLN PRO ALA ILE ASP SER GLY LYS GLY LEU MET PHE THR SEQRES 52 A 878 GLN PRO ASN GLN ALA ALA GLY TYR MET ALA LYS LEU ILE SEQRES 53 A 878 TRP GLU SER VAL SER VAL THR VAL VAL ALA ALA VAL GLU SEQRES 54 A 878 ALA MET ASN TRP LEU LYS SER ALA ALA LYS LEU LEU ALA SEQRES 55 A 878 ALA GLU VAL LYS ASP LYS LYS THR GLY GLU ILE LEU ARG SEQRES 56 A 878 LYS ARG CYS ALA VAL HIS TRP VAL THR PRO ASP GLY PHE SEQRES 57 A 878 PRO VAL TRP GLN GLU TYR LYS LYS PRO ILE GLN THR ARG SEQRES 58 A 878 LEU ASN LEU MET PHE LEU GLY GLN PHE ARG LEU GLN PRO SEQRES 59 A 878 THR ILE ASN THR ASN LYS ASP SER GLU ILE ASP ALA HIS SEQRES 60 A 878 LYS GLN GLU SER GLY ILE ALA PRO ASN PHE VAL HIS SER SEQRES 61 A 878 GLN ASP GLY SER HIS LEU ARG LYS THR VAL VAL TRP ALA SEQRES 62 A 878 HIS GLU LYS TYR GLY ILE GLU SER PHE ALA LEU ILE HIS SEQRES 63 A 878 ASP SER PHE GLY THR ILE PRO ALA ASP ALA ALA ASN LEU SEQRES 64 A 878 PHE LYS ALA VAL ARG GLU THR MET VAL ASP THR TYR GLU SEQRES 65 A 878 SER CYS ASP VAL LEU ALA ASP PHE TYR ASP GLN PHE ALA SEQRES 66 A 878 ASP GLN LEU HIS GLU SER GLN LEU ASP LYS MET PRO ALA SEQRES 67 A 878 LEU PRO ALA LYS GLY ASN LEU ASN LEU ARG ASP ILE LEU SEQRES 68 A 878 GLU SER ASP PHE ALA PHE ALA
HELIX 1 1 ILE A 6 PHE A 11 1 6 HELIX 2 2 SER A 12 ALA A 17 1 6 HELIX 3 3 ALA A 18 ASP A 26 1 9 HELIX 4 4 GLY A 29 GLU A 42 1 14 HELIX 5 5 GLY A 47 LYS A 53 1 7 HELIX 6 6 LEU A 73 LYS A 95 1 23 HELIX 7 7 PRO A 100 GLN A 107 1 8 HELIX 8 8 LYS A 110 LEU A 126 1 17 HELIX 9 9 THR A 133 ARG A 150 1 18 HELIX 10 10 PHE A 151 LYS A 164 1 14 HELIX 11 11 GLN A 169 GLY A 175 1 7 HELIX 12 12 GLU A 187 LEU A 191 5 5 HELIX 13 13 SER A 192 LEU A 196 5 5 HELIX 14 14 HIS A 205 THR A 224 1 20 HELIX 15 15 ALA A 247 ARG A 257 1 11 HELIX 16 16 SER A 301 ARG A 307 1 7 HELIX 17 17 MET A 313 THR A 326 1 14 HELIX 18 18 ASN A 331 THR A 342 1 12 HELIX 19 19 GLU A 372 ALA A 409 1 38 HELIX 20 20 ASN A 437 LEU A 443 1 7 HELIX 21 21 ILE A 452 CYS A 467 1 16 HELIX 22 22 PRO A 474 GLU A 484 1 11 HELIX 23 23 ASN A 485 SER A 495 1 11 HELIX 24 24 ASN A 499 GLN A 505 5 7 HELIX 25 25 SER A 507 HIS A 523 1 17 HELIX 26 26 HIS A 524 SER A 527 5 4 HELIX 27 27 GLY A 542 LEU A 550 1 9 HELIX 28 28 ASP A 552 ASN A 560 1 9 HELIX 29 29 ASP A 569 ASN A 588 1 20 HELIX 30 30 GLY A 612 GLY A 624 1 13 HELIX 31 31 ARG A 627 VAL A 629 5 3 HELIX 32 32 THR A 630 THR A 636 1 7 HELIX 33 33 LEU A 637 GLY A 640 5 4 HELIX 34 34 LYS A 642 THR A 654 1 13 HELIX 35 35 ILE A 655 GLY A 662 1 8 HELIX 36 36 GLN A 669 VAL A 689 1 21 HELIX 37 37 VAL A 689 ALA A 708 1 20 HELIX 38 38 ASP A 770 SER A 776 1 7 HELIX 39 39 GLY A 777 LYS A 801 1 25 HELIX 40 40 ILE A 817 SER A 838 1 22 HELIX 41 41 ASP A 840 ALA A 850 1 11 HELIX 42 42 ARG A 873 SER A 878 1 6
SHEET 1 A 2 VAL A 227 GLN A 232 0 SHEET 2 A 2 SER A 241 LEU A 246 -1 O SER A 241 N GLN A 232 SHEET 1 B 2 TRP A 328 ILE A 330 0 SHEET 2 B 2 LEU A 444 LEU A 446 -1 O THR A 445 N LYS A 329 SHEET 1 C 2 TYR A 418 MET A 420 0 SHEET 2 C 2 VAL A 426 ALA A 428 -1 O TYR A 427 N ASN A 419 SHEET 1 D 2 LYS A 450 PRO A 451 0 SHEET 2 D 2 ASN A 529 CYS A 530 -1 O CYS A 530 N LYS A 450 SHEET 1 E 2 LEU A 534 ASP A 537 0 SHEET 2 E 2 SER A 813 THR A 816 -1 O THR A 816 N LEU A 534 SHEET 1 F 2 VAL A 710 LYS A 711 0 SHEET 2 F 2 ILE A 718 ARG A 720 -1 O LEU A 719 N VAL A 710 SHEET 1 G 2 VAL A 725 THR A 729 0 SHEET 2 G 2 PHE A 733 GLN A 737 -1 O GLN A 737 N VAL A 725 SHEET 1 H 2 LYS A 740 ILE A 743 0 SHEET 2 H 2 THR A 763 ILE A 769 -1 O GLU A 768 N LYS A 741 SHEET 1 I 2 LEU A 749 PHE A 751 0 SHEET 2 I 2 PHE A 755 LEU A 757 -1 O PHE A 755 N PHE A 751
CRYST1 224.450 73.791 80.315 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.004455 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013552 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012451 0.00000