2PHX - Header Asymmetric Unit

HEADER SUGAR BINDING PROTEIN 12-APR-07 2PHX

TITLE PTEROCARPUS ANGOLENSIS LECTIN (PAL) IN COMPLEX WITH MAN-5

COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PTEROCARPUS ANGOLENSIS; SOURCE 3 ORGANISM_TAXID: 182271

KEYWDS LECTIN, CARBOHYDRATE, HIGH MANNOSE, SUGAR BINDING PROTEIN

EXPDTA X-RAY DIFFRACTION

AUTHOR A.GARCIA-PINO,L.BUTS,L.WYNS,A.IMBERTY,R.LORIS

REVDAT 3 24-FEB-09 2PHX 1 VERSN REVDAT 2 04-SEP-07 2PHX 1 JRNL REVDAT 1 10-JUL-07 2PHX 0

JRNL AUTH A.GARCIA-PINO,L.BUTS,L.WYNS,A.IMBERTY,R.LORIS JRNL TITL HOW A PLANT LECTIN RECOGNIZES HIGH MANNOSE JRNL TITL 2 OLIGOSACCHARIDES JRNL REF PLANT PHYSIOL. V. 144 1733 2007 JRNL REFN ISSN 0032-0889 JRNL PMID 17556509 JRNL DOI 10.1104/PP.107.100867

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 54225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2674 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3947 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.55 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2PHX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB042393.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.81 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1Q8P REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CACODYLATE PH 6.6, 200 MM REMARK 280 CACL2, 18% PEG-6000, 20 MM MAN(A1-3)MAN, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.41500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.40500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.40500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.41500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 241 REMARK 465 GLN A 242 REMARK 465 LYS A 243 REMARK 465 LYS A 244 REMARK 465 GLY A 245 REMARK 465 GLU A 246 REMARK 465 ASN A 247 REMARK 465 LEU A 248 REMARK 465 ALA A 249 REMARK 465 LEU A 250 REMARK 465 GLU A 251 REMARK 465 MET A 252 REMARK 465 ALA B 241 REMARK 465 GLN B 242 REMARK 465 LYS B 243 REMARK 465 LYS B 244 REMARK 465 GLY B 245 REMARK 465 GLU B 246 REMARK 465 ASN B 247 REMARK 465 LEU B 248 REMARK 465 ALA B 249 REMARK 465 LEU B 250 REMARK 465 GLU B 251 REMARK 465 MET B 252

REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 THR A 240

REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 27 CE NZ REMARK 480 LYS A 35 CE NZ REMARK 480 LYS A 61 CD CE NZ REMARK 480 LYS A 78 CD CE NZ REMARK 480 SER A 82 OG REMARK 480 ARG A 155 NE CZ NH1 NH2 REMARK 480 LYS A 158 CE NZ REMARK 480 ARG A 181 CZ NH1 NH2 REMARK 480 GLU A 221 CD OE1 OE2 REMARK 480 TYR A 239 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS B 35 CE NZ REMARK 480 ASN B 39 CG OD1 ND2 REMARK 480 LYS B 61 CE NZ REMARK 480 LYS B 78 CE NZ REMARK 480 LYS B 161 CE NZ REMARK 480 ARG B 181 CZ NH1 NH2 REMARK 480 TYR B 239 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 THR B 240 OG1 CG2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 108 18.99 56.90 REMARK 500 ASN A 138 66.60 -111.65 REMARK 500 LEU B 108 18.51 57.76 REMARK 500 ASN B 138 64.72 -102.49 REMARK 500 REMARK 500 REMARK: NULL

REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MAN A 254

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 128 OE1 REMARK 620 2 ASP A 130 OD2 96.0 REMARK 620 3 ASP A 141 OD1 170.0 93.3 REMARK 620 4 HOH A 305 O 83.3 92.7 92.7 REMARK 620 5 HOH A 306 O 83.9 178.8 86.8 88.4 REMARK 620 6 HIS A 146 NE2 92.4 89.3 91.4 175.4 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 130 OD1 REMARK 620 2 ASP A 130 OD2 52.8 REMARK 620 3 PHE A 132 O 76.4 115.2 REMARK 620 4 ASN A 138 OD1 153.0 153.0 87.6 REMARK 620 5 ASP A 141 OD2 109.1 78.2 84.8 90.6 REMARK 620 6 HOH A 303 O 111.4 72.9 171.6 83.9 95.2 REMARK 620 7 HOH A 304 O 72.9 109.4 86.9 84.8 170.6 92.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 128 OE1 REMARK 620 2 ASP B 130 OD2 94.7 REMARK 620 3 ASP B 141 OD1 171.9 93.4 REMARK 620 4 HOH B 303 O 87.2 177.9 84.7 REMARK 620 5 HOH B 304 O 83.4 93.8 95.8 87.3 REMARK 620 6 HIS B 146 NE2 90.7 89.4 89.7 89.7 173.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 130 OD1 REMARK 620 2 ASP B 130 OD2 52.4 REMARK 620 3 PHE B 132 O 79.1 116.7 REMARK 620 4 ASN B 138 OD1 152.5 153.6 85.5 REMARK 620 5 ASP B 141 OD2 112.5 80.1 85.2 88.4 REMARK 620 6 HOH B 306 O 73.1 109.6 87.8 83.8 169.9 REMARK 620 7 HOH B 305 O 111.2 73.4 169.2 83.8 93.3 92.3 REMARK 620 N 1 2 3 4 5 6

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 253 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 254 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN B 253 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN B 254 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN B 255 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN B 256 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 301 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 302

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q8P RELATED DB: PDB REMARK 900 RELATED ID: 2PHF RELATED DB: PDB REMARK 900 RELATED ID: 2PHR RELATED DB: PDB REMARK 900 RELATED ID: 2PHT RELATED DB: PDB REMARK 900 RELATED ID: 2PHU RELATED DB: PDB REMARK 900 RELATED ID: 2PHW RELATED DB: PDB

DBREF 2PHX A 1 252 UNP Q8GSD2 Q8GSD2_9FABA 9 260 DBREF 2PHX B 1 252 UNP Q8GSD2 Q8GSD2_9FABA 9 260

SEQADV 2PHX PCA A 1 UNP Q8GSD2 GLN 9 MODIFIED RESIDUE SEQADV 2PHX PCA B 1 UNP Q8GSD2 GLN 9 MODIFIED RESIDUE

SEQRES 1 A 252 PCA ASP SER LEU SER PHE GLY PHE PRO THR PHE PRO SER SEQRES 2 A 252 ASP GLN LYS ASN LEU ILE PHE GLN GLY ASP ALA GLN ILE SEQRES 3 A 252 LYS ASN ASN ALA VAL GLN LEU THR LYS THR ASP SER ASN SEQRES 4 A 252 GLY ASN PRO VAL ALA SER THR VAL GLY ARG ILE LEU PHE SEQRES 5 A 252 SER ALA GLN VAL HIS LEU TRP GLU LYS SER SER SER ARG SEQRES 6 A 252 VAL ALA ASN PHE GLN SER GLN PHE SER PHE SER LEU LYS SEQRES 7 A 252 SER PRO LEU SER ASN GLY ALA ASP GLY ILE ALA PHE PHE SEQRES 8 A 252 ILE ALA PRO PRO ASP THR THR ILE PRO SER GLY SER GLY SEQRES 9 A 252 GLY GLY LEU LEU GLY LEU PHE ALA PRO GLY THR ALA GLN SEQRES 10 A 252 ASN THR SER ALA ASN GLN VAL ILE ALA VAL GLU PHE ASP SEQRES 11 A 252 THR PHE TYR ALA GLN ASP SER ASN THR TRP ASP PRO ASN SEQRES 12 A 252 TYR PRO HIS ILE GLY ILE ASP VAL ASN SER ILE ARG SER SEQRES 13 A 252 VAL LYS THR VAL LYS TRP ASP ARG ARG ASP GLY GLN SER SEQRES 14 A 252 LEU ASN VAL LEU VAL THR PHE ASN PRO SER THR ARG ASN SEQRES 15 A 252 LEU ASP VAL VAL ALA THR TYR SER ASP GLY THR ARG TYR SEQRES 16 A 252 GLU VAL SER TYR GLU VAL ASP VAL ARG SER VAL LEU PRO SEQRES 17 A 252 GLU TRP VAL ARG VAL GLY PHE SER ALA ALA SER GLY GLU SEQRES 18 A 252 GLN TYR GLN THR HIS THR LEU GLU SER TRP SER PHE THR SEQRES 19 A 252 SER THR LEU LEU TYR THR ALA GLN LYS LYS GLY GLU ASN SEQRES 20 A 252 LEU ALA LEU GLU MET SEQRES 1 B 252 PCA ASP SER LEU SER PHE GLY PHE PRO THR PHE PRO SER SEQRES 2 B 252 ASP GLN LYS ASN LEU ILE PHE GLN GLY ASP ALA GLN ILE SEQRES 3 B 252 LYS ASN ASN ALA VAL GLN LEU THR LYS THR ASP SER ASN SEQRES 4 B 252 GLY ASN PRO VAL ALA SER THR VAL GLY ARG ILE LEU PHE SEQRES 5 B 252 SER ALA GLN VAL HIS LEU TRP GLU LYS SER SER SER ARG SEQRES 6 B 252 VAL ALA ASN PHE GLN SER GLN PHE SER PHE SER LEU LYS SEQRES 7 B 252 SER PRO LEU SER ASN GLY ALA ASP GLY ILE ALA PHE PHE SEQRES 8 B 252 ILE ALA PRO PRO ASP THR THR ILE PRO SER GLY SER GLY SEQRES 9 B 252 GLY GLY LEU LEU GLY LEU PHE ALA PRO GLY THR ALA GLN SEQRES 10 B 252 ASN THR SER ALA ASN GLN VAL ILE ALA VAL GLU PHE ASP SEQRES 11 B 252 THR PHE TYR ALA GLN ASP SER ASN THR TRP ASP PRO ASN SEQRES 12 B 252 TYR PRO HIS ILE GLY ILE ASP VAL ASN SER ILE ARG SER SEQRES 13 B 252 VAL LYS THR VAL LYS TRP ASP ARG ARG ASP GLY GLN SER SEQRES 14 B 252 LEU ASN VAL LEU VAL THR PHE ASN PRO SER THR ARG ASN SEQRES 15 B 252 LEU ASP VAL VAL ALA THR TYR SER ASP GLY THR ARG TYR SEQRES 16 B 252 GLU VAL SER TYR GLU VAL ASP VAL ARG SER VAL LEU PRO SEQRES 17 B 252 GLU TRP VAL ARG VAL GLY PHE SER ALA ALA SER GLY GLU SEQRES 18 B 252 GLN TYR GLN THR HIS THR LEU GLU SER TRP SER PHE THR SEQRES 19 B 252 SER THR LEU LEU TYR THR ALA GLN LYS LYS GLY GLU ASN SEQRES 20 B 252 LEU ALA LEU GLU MET

MODRES 2PHX PCA A 1 GLU PYROGLUTAMIC ACID MODRES 2PHX PCA B 1 GLU PYROGLUTAMIC ACID

HET PCA A 1 8 HET PCA B 1 8 HET MAN A 253 11 HET MAN A 254 12 HET MAN B 253 11 HET MAN B 254 11 HET MAN B 255 11 HET MAN B 256 12 HET MN A 301 1 HET CA A 302 1 HET MN B 301 1 HET CA B 302 1

HETNAM PCA PYROGLUTAMIC ACID HETNAM MAN ALPHA-D-MANNOSE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION

FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 3 MAN 6(C6 H12 O6) FORMUL 5 MN 2(MN 2+) FORMUL 6 CA 2(CA 2+) FORMUL 9 HOH *276(H2 O)

HELIX 1 1 GLY A 104 LEU A 108 5 5 HELIX 2 2 ALA A 112 ALA A 116 5 5 HELIX 3 3 ASN A 118 ASN A 122 5 5 HELIX 4 4 ASP A 202 VAL A 206 5 5 HELIX 5 5 GLY B 104 LEU B 108 5 5 HELIX 6 6 ALA B 112 ALA B 116 5 5 HELIX 7 7 ASN B 118 ASN B 122 5 5 HELIX 8 8 ASP B 202 VAL B 206 5 5

SHEET 1 A 5 ARG A 194 GLU A 200 0 SHEET 2 A 5 ASN A 182 THR A 188 -1 N LEU A 183 O TYR A 199 SHEET 3 A 5 LEU A 170 ASN A 177 -1 N THR A 175 O ASP A 184 SHEET 4 A 5 ARG A 65 LYS A 78 -1 N PHE A 73 O VAL A 172 SHEET 5 A 5 TRP A 59 GLU A 60 -1 N GLU A 60 O ARG A 65 SHEET 1 B11 ARG A 65 LYS A 78 0 SHEET 2 B11 THR A 225 TYR A 239 -1 O SER A 232 N GLN A 72 SHEET 3 B11 ALA A 30 GLN A 32 -1 N VAL A 31 O LEU A 228 SHEET 4 B11 GLN A 25 LYS A 27 -1 N GLN A 25 O GLN A 32 SHEET 5 B11 ALA A 30 GLN A 32 -1 O GLN A 32 N GLN A 25 SHEET 6 B11 THR A 225 TYR A 239 -1 O LEU A 228 N VAL A 31 SHEET 7 B11 SER A 3 PHE A 8 -1 N PHE A 8 O TRP A 231 SHEET 8 B11 SER B 3 PHE B 8 -1 O SER B 5 N SER A 5 SHEET 9 B11 THR B 225 TYR B 239 -1 O TRP B 231 N PHE B 8 SHEET 10 B11 ALA B 30 GLN B 32 -1 N VAL B 31 O LEU B 228 SHEET 11 B11 GLN B 25 LYS B 27 -1 N GLN B 25 O GLN B 32 SHEET 1 C 7 THR B 225 TYR B 239 0 SHEET 2 C 7 ARG B 65 LYS B 78 -1 N GLN B 72 O SER B 232 SHEET 3 C 7 TRP B 59 GLU B 60 -1 N GLU B 60 O ARG B 65 SHEET 4 C 7 ARG B 65 LYS B 78 -1 O ARG B 65 N GLU B 60 SHEET 5 C 7 LEU B 170 ASN B 177 -1 O VAL B 172 N PHE B 73 SHEET 6 C 7 ASN B 182 THR B 188 -1 O THR B 188 N ASN B 171 SHEET 7 C 7 ARG B 194 GLU B 200 -1 O TYR B 199 N LEU B 183 SHEET 1 D 4 LEU A 18 GLY A 22 0 SHEET 2 D 4 THR A 46 PHE A 52 -1 O LEU A 51 N ILE A 19 SHEET 3 D 4 TRP A 210 SER A 219 -1 O SER A 219 N THR A 46 SHEET 4 D 4 VAL A 56 HIS A 57 -1 N VAL A 56 O VAL A 211 SHEET 1 E 7 LEU A 18 GLY A 22 0 SHEET 2 E 7 THR A 46 PHE A 52 -1 O LEU A 51 N ILE A 19 SHEET 3 E 7 TRP A 210 SER A 219 -1 O SER A 219 N THR A 46 SHEET 4 E 7 GLY A 87 ALA A 93 -1 N ALA A 93 O ARG A 212 SHEET 5 E 7 ILE A 125 ASP A 130 -1 O VAL A 127 N PHE A 90 SHEET 6 E 7 HIS A 146 VAL A 151 -1 O ASP A 150 N ALA A 126 SHEET 7 E 7 LYS A 158 LYS A 161 -1 O LYS A 158 N ILE A 149 SHEET 1 F 4 LEU B 18 GLY B 22 0 SHEET 2 F 4 THR B 46 PHE B 52 -1 O LEU B 51 N ILE B 19 SHEET 3 F 4 TRP B 210 SER B 219 -1 O VAL B 213 N PHE B 52 SHEET 4 F 4 VAL B 56 HIS B 57 -1 N VAL B 56 O VAL B 211 SHEET 1 G 7 LEU B 18 GLY B 22 0 SHEET 2 G 7 THR B 46 PHE B 52 -1 O LEU B 51 N ILE B 19 SHEET 3 G 7 TRP B 210 SER B 219 -1 O VAL B 213 N PHE B 52 SHEET 4 G 7 GLY B 87 ALA B 93 -1 N ALA B 89 O SER B 216 SHEET 5 G 7 ILE B 125 ASP B 130 -1 O VAL B 127 N PHE B 90 SHEET 6 G 7 HIS B 146 VAL B 151 -1 O ASP B 150 N ALA B 126 SHEET 7 G 7 LYS B 158 LYS B 161 -1 O LYS B 158 N ILE B 149

LINK OE1 GLU A 128 MN MN A 301 1555 1555 2.13 LINK OD1 ASP A 130 CA CA A 302 1555 1555 2.45 LINK OD2 ASP A 130 MN MN A 301 1555 1555 2.03 LINK OD2 ASP A 130 CA CA A 302 1555 1555 2.57 LINK O PHE A 132 CA CA A 302 1555 1555 2.40 LINK OD1 ASN A 138 CA CA A 302 1555 1555 2.38 LINK OD1 ASP A 141 MN MN A 301 1555 1555 2.20 LINK OD2 ASP A 141 CA CA A 302 1555 1555 2.27 LINK OE1 GLU B 128 MN MN B 301 1555 1555 2.17 LINK OD1 ASP B 130 CA CA B 302 1555 1555 2.44 LINK OD2 ASP B 130 MN MN B 301 1555 1555 2.15 LINK OD2 ASP B 130 CA CA B 302 1555 1555 2.50 LINK O PHE B 132 CA CA B 302 1555 1555 2.36 LINK OD1 ASN B 138 CA CA B 302 1555 1555 2.42 LINK OD1 ASP B 141 MN MN B 301 1555 1555 2.21 LINK OD2 ASP B 141 CA CA B 302 1555 1555 2.34 LINK C1 MAN A 253 O3 MAN A 254 1555 1555 1.41 LINK C1 MAN B 253 O6 MAN B 254 1555 1555 1.40 LINK O3 MAN B 254 C1 MAN B 255 1555 1555 1.40 LINK MN MN A 301 O HOH A 305 1555 1555 2.28 LINK MN MN A 301 O HOH A 306 1555 1555 1.96 LINK CA CA A 302 O HOH A 303 1555 1555 2.41 LINK CA CA A 302 O HOH A 304 1555 1555 2.43 LINK MN MN B 301 O HOH B 303 1555 1555 2.24 LINK MN MN B 301 O HOH B 304 1555 1555 2.20 LINK CA CA B 302 O HOH B 306 1555 1555 2.39 LINK CA CA B 302 O HOH B 305 1555 1555 2.41 LINK C1 MAN B 254 O6 MAN B 256 1555 1555 1.41 LINK C PCA A 1 N ASP A 2 1555 1555 1.33 LINK MN MN A 301 NE2 HIS A 146 1555 1555 2.27 LINK C PCA B 1 N ASP B 2 1555 1555 1.33 LINK MN MN B 301 NE2 HIS B 146 1555 1555 2.28

CISPEP 1 ALA A 85 ASP A 86 0 0.61 CISPEP 2 ALA B 85 ASP B 86 0 0.15

SITE 1 AC1 11 ALA A 85 ASP A 86 GLY A 105 GLY A 106 SITE 2 AC1 11 PHE A 132 ASN A 138 GLY A 220 GLU A 221 SITE 3 AC1 11 GLN A 222 MAN A 254 HOH A 320 SITE 1 AC2 1 MAN A 253 SITE 1 AC3 12 ALA B 85 ASP B 86 GLY B 105 GLY B 106 SITE 2 AC3 12 PHE B 132 SER B 137 ASN B 138 GLY B 220 SITE 3 AC3 12 GLU B 221 GLN B 222 MAN B 254 HOH B 424 SITE 1 AC4 11 PHE B 132 ALA B 134 ASP B 136 SER B 137 SITE 2 AC4 11 GLU B 221 GLN B 222 MAN B 253 MAN B 255 SITE 3 AC4 11 MAN B 256 HOH B 423 HOH B 425 SITE 1 AC5 2 ASN B 83 MAN B 254 SITE 1 AC6 2 GLU B 221 MAN B 254 SITE 1 AC7 6 GLU A 128 ASP A 130 ASP A 141 HIS A 146 SITE 2 AC7 6 HOH A 305 HOH A 306 SITE 1 AC8 6 ASP A 130 PHE A 132 ASN A 138 ASP A 141 SITE 2 AC8 6 HOH A 303 HOH A 304 SITE 1 AC9 6 GLU B 128 ASP B 130 ASP B 141 HIS B 146 SITE 2 AC9 6 HOH B 303 HOH B 304 SITE 1 BC1 6 ASP B 130 PHE B 132 ASN B 138 ASP B 141 SITE 2 BC1 6 HOH B 305 HOH B 306

CRYST1 56.830 83.570 122.810 90.00 90.00 90.00 P 21 21 21 8

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.017596 0.000000 0.000000 0.00000

SCALE2 0.000000 0.011966 0.000000 0.00000

SCALE3 0.000000 0.000000 0.008143 0.00000