2P8W - Header Asymmetric Unit

HEADER TRANSLATION 23-MAR-07 2P8W

TITLE FITTED STRUCTURE OF EEF2 IN THE 80S:EEF2:GDPNP CRYO-EM TITLE 2 RECONSTRUCTION

COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR 2; COMPND 3 CHAIN: T; COMPND 4 SYNONYM: EF-2, TRANSLATION ELONGATION FACTOR 2, EUKARYOTIC COMPND 5 ELONGATION FACTOR 2, EEF2, RIBOSOMAL TRANSLOCASE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ELONGATION FACTOR TU-B; COMPND 8 CHAIN: S; COMPND 9 FRAGMENT: SWITCH 1 LOOP; COMPND 10 SYNONYM: EF-TU-B

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 7 ORGANISM_TAXID: 274

KEYWDS ELONGATION, TRANSLOCATION, GTPASE, 80S RIBOSOME, TRANSLATION

EXPDTA ELECTRON MICROSCOPY

AUTHOR D.J.TAYLOR,J.NILSSON,A.R.MERRILL,G.R.ANDERSEN,P.NISSEN, AUTHOR 2 J.FRANK

REVDAT 3 24-FEB-09 2P8W 1 VERSN REVDAT 2 15-MAY-07 2P8W 1 JRNL REVDAT 1 08-MAY-07 2P8W 0

JRNL AUTH D.J.TAYLOR,J.NILSSON,A.R.MERRILL,G.R.ANDERSEN, JRNL AUTH 2 P.NISSEN,J.FRANK JRNL TITL STRUCTURES OF MODIFIED EEF2.80S RIBOSOME COMPLEXES JRNL TITL 2 REVEAL THE ROLE OF GTP HYDROLYSIS IN TRANSLOCATION. JRNL REF EMBO J. V. 26 2421 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17446867 JRNL DOI 10.1038/SJ.EMBOJ.7601677

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 11.30 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : TNT IMPLEMENTATION OF RSREF REMARK 3 RECONSTRUCTION SCHEMA : 3D PROJECTION MATCHING, CONJUGATE REMARK 3 GRADIENTS WITH REGULARIZATION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1U2R (CHAIN T), 1EFT (CHAIN S) REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : TNT IMPLEMENTATION OF RSREF REMARK 3 REFINEMENT TARGET : MAXIMIZATION OF CORRELATION- REMARK 3 COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REAL-SPACE REFINEMENT USING RIGID BODIES REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.860 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : 1.860 REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 11.300 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : CTF CORRECTION OF 3D-MAPS REMARK 3 BY WIENER FILTRATION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV REMARK 3 REMARK 3 OTHER DETAILS: SPIDER PACKAGE

REMARK 4 REMARK 4 2P8W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB042113.

REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : ASYMMETRIC REMARK 245 NAME OF SAMPLE : NULL REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL HOLEY-CARBON FILM REMARK 245 GRIDS REMARK 245 SAMPLE VITRIFICATION DETAILS : RAPID-FREEZING IN LIQUID REMARK 245 ETHANE REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 07-JUL-05 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 93.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : KODAK SO163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.26 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 39000 REMARK 245 CALIBRATED MAGNIFICATION : 37642 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL

REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS.

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET T 1 REMARK 465 VAL T 2 REMARK 465 ALA T 49 REMARK 465 LYS T 50 REMARK 465 ALA T 51 REMARK 465 GLY T 52 REMARK 465 GLU T 53 REMARK 465 ALA T 54 REMARK 465 ARG T 55 REMARK 465 PHE T 56 REMARK 465 THR T 57 REMARK 465 ASP T 58 REMARK 465 THR T 59 REMARK 465 ARG T 60 REMARK 465 LYS T 61 REMARK 465 ASP T 62 REMARK 465 GLU T 63 REMARK 465 GLN T 64 REMARK 465 GLU T 65 REMARK 465 ARG T 66 REMARK 465 GLN T 725 REMARK 465 GLU T 726 REMARK 465 PRO T 727 REMARK 465 VAL T 728 REMARK 465 PHE T 729 REMARK 465 ARG T 760 REMARK 465 PRO T 761 REMARK 465 GLY T 762

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 ILE T 75 CB VAL S 68 0.37 REMARK 500 N ALA T 43 N THR S 35 0.46 REMARK 500 CA ALA T 43 CA THR S 35 0.60 REMARK 500 CB ILE T 75 N GLU S 69 0.80 REMARK 500 CE2 PHE T 4 ND2 ASN S 39 0.83 REMARK 500 C GLY T 44 CB VAL S 42 0.84 REMARK 500 N ALA T 3 CA PRO S 40 0.87 REMARK 500 CA ILE T 75 CA GLU S 69 0.92 REMARK 500 N ILE T 45 CB VAL S 42 0.93 REMARK 500 CA PHE T 4 ND2 ASN S 41 0.94 REMARK 500 CG1 ILE T 75 CA VAL S 68 0.95 REMARK 500 CB ALA T 43 CG2 THR S 35 0.95 REMARK 500 C ARG T 42 N THR S 35 0.98 REMARK 500 CA ILE T 75 N GLU S 69 1.00 REMARK 500 CB PHE T 4 ND2 ASN S 41 1.01 REMARK 500 N ILE T 46 C ASN S 41 1.02 REMARK 500 C ILE T 75 CA GLU S 69 1.03 REMARK 500 CA ALA T 43 CB THR S 35 1.04 REMARK 500 N ILE T 75 O VAL S 68 1.09 REMARK 500 C ALA T 43 OG1 THR S 35 1.10 REMARK 500 CA ALA T 3 C PRO S 40 1.10 REMARK 500 CB ARG T 144 SD MET T 481 1.12 REMARK 500 CB ALA T 43 CB THR S 35 1.18 REMARK 500 C ILE T 45 CA VAL S 42 1.18 REMARK 500 N ILE T 45 CG2 VAL S 42 1.20 REMARK 500 OD1 ASP T 104 O ALA S 66 1.23 REMARK 500 N ALA T 3 C PRO S 40 1.24 REMARK 500 N PHE T 4 CG ASN S 41 1.24 REMARK 500 CA PRO T 106 CG2 THR S 65 1.26 REMARK 500 N ILE T 46 N VAL S 42 1.26 REMARK 500 CG1 ILE T 75 C VAL S 68 1.26 REMARK 500 O THR T 73 ND1 HIS S 67 1.28 REMARK 500 CD1 ILE T 75 CG2 VAL S 68 1.28 REMARK 500 N ALA T 3 N PRO S 40 1.30 REMARK 500 CG2 THR T 221 OE1 GLU T 336 1.31 REMARK 500 C GLY T 44 CG1 VAL S 42 1.31 REMARK 500 CA GLY T 44 CG1 VAL S 42 1.31 REMARK 500 C THR T 73 CB HIS S 67 1.31 REMARK 500 C ALA T 43 CB THR S 35 1.33 REMARK 500 CG1 ILE T 75 CB VAL S 68 1.37 REMARK 500 N GLY T 44 OG1 THR S 35 1.38 REMARK 500 CA ILE T 45 CA VAL S 42 1.38 REMARK 500 CB ILE T 75 C VAL S 68 1.38 REMARK 500 C ILE T 45 N VAL S 42 1.44 REMARK 500 CD1 ILE T 70 O GLY T 439 1.45 REMARK 500 O GLY T 44 CB VAL S 42 1.45 REMARK 500 NH1 ARG T 120 O LYS T 479 1.47 REMARK 500 CG2 ILE T 75 O GLU S 69 1.47 REMARK 500 N SER T 76 C GLU S 69 1.50 REMARK 500 N ALA T 43 CA THR S 35 1.50 REMARK 500 REMARK 500 THIS ENTRY HAS 185 CLOSE CONTACTS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET T 478 N MET T 478 CA 0.121 REMARK 500 MET T 478 CA MET T 478 C 0.253 REMARK 500 LYS T 479 N LYS T 479 CA 0.444 REMARK 500 LYS T 479 CA LYS T 479 C 0.551 REMARK 500 MET T 478 C LYS T 479 N 0.344 REMARK 500 VAL T 480 N VAL T 480 CA 0.659 REMARK 500 VAL T 480 CA VAL T 480 C 0.795 REMARK 500 MET T 481 N MET T 481 CA 0.718 REMARK 500 MET T 481 CA MET T 481 C 0.390 REMARK 500 LYS T 482 N LYS T 482 CA 0.284 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS T 479 N - CA - CB ANGL. DEV. = -13.8 DEGREES REMARK 500 LYS T 479 N - CA - C ANGL. DEV. = 34.6 DEGREES REMARK 500 LYS T 479 CA - C - O ANGL. DEV. = -14.6 DEGREES REMARK 500 MET T 478 CA - C - N ANGL. DEV. = 15.7 DEGREES REMARK 500 LYS T 479 C - N - CA ANGL. DEV. = 21.7 DEGREES REMARK 500 VAL T 480 N - CA - CB ANGL. DEV. = -25.3 DEGREES REMARK 500 VAL T 480 N - CA - C ANGL. DEV. = 51.6 DEGREES REMARK 500 VAL T 480 CA - C - O ANGL. DEV. = -18.8 DEGREES REMARK 500 MET T 481 CB - CA - C ANGL. DEV. = -29.4 DEGREES REMARK 500 MET T 481 N - CA - CB ANGL. DEV. = 16.4 DEGREES REMARK 500 MET T 481 N - CA - C ANGL. DEV. = 31.6 DEGREES REMARK 500 LYS T 482 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 LYS T 482 N - CA - CB ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP T 29 -1.26 72.70 REMARK 500 LYS T 90 41.97 -77.09 REMARK 500 GLN T 168 18.27 53.66 REMARK 500 VAL T 169 153.13 -45.87 REMARK 500 LYS T 231 4.65 -63.97 REMARK 500 LYS T 293 -8.98 -54.88 REMARK 500 LYS T 391 80.08 20.89 REMARK 500 ASP T 425 -5.25 54.99 REMARK 500 LYS T 465 -142.31 87.90 REMARK 500 ALA T 498 -45.79 -26.89 REMARK 500 ASP T 548 -79.13 -101.95 REMARK 500 LYS T 582 5.08 80.23 REMARK 500 TYR T 655 42.62 -101.67 REMARK 500 PHE T 677 24.39 -161.05 REMARK 500 ILE T 698 -73.07 -53.93 REMARK 500 ARG T 700 -6.00 159.46 REMARK 500 ASP T 721 71.65 53.23 REMARK 500 GLN T 738 -17.04 -47.99 REMARK 500 GLU T 758 -165.49 -107.47 REMARK 500 PRO T 764 -139.57 -55.43 REMARK 500 PRO T 811 -16.63 -46.46 REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP T 843

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K5X RELATED DB: PDB REMARK 900 THE FITTED MODEL FOR THE 40S SUBUNIT OF THE 80S RIBOSOME REMARK 900 RELATED ID: 1K5Y RELATED DB: PDB REMARK 900 THE FITTED MODEL FOR THE 60S SUBUNIT OF THE 80S RIBOSOME REMARK 900 RELATED ID: 2P8X RELATED DB: PDB REMARK 900 RELATED ID: 2P8Y RELATED DB: PDB REMARK 900 RELATED ID: 2P8Z RELATED DB: PDB REMARK 900 RELATED ID: EMD-1342 RELATED DB: EMDB

DBREF 2P8W T 1 842 UNP P32324 EF2_YEAST 1 842 DBREF 2P8W S 35 69 UNP P60339 EFTU2_THET8 36 70

SEQRES 1 T 842 MET VAL ALA PHE THR VAL ASP GLN MET ARG SER LEU MET SEQRES 2 T 842 ASP LYS VAL THR ASN VAL ARG ASN MET SER VAL ILE ALA SEQRES 3 T 842 HIS VAL ASP HIS GLY LYS SER THR LEU THR ASP SER LEU SEQRES 4 T 842 VAL GLN ARG ALA GLY ILE ILE SER ALA ALA LYS ALA GLY SEQRES 5 T 842 GLU ALA ARG PHE THR ASP THR ARG LYS ASP GLU GLN GLU SEQRES 6 T 842 ARG GLY ILE THR ILE LYS SER THR ALA ILE SER LEU TYR SEQRES 7 T 842 SER GLU MET SER ASP GLU ASP VAL LYS GLU ILE LYS GLN SEQRES 8 T 842 LYS THR ASP GLY ASN SER PHE LEU ILE ASN LEU ILE ASP SEQRES 9 T 842 SER PRO GLY HIS VAL ASP PHE SER SER GLU VAL THR ALA SEQRES 10 T 842 ALA LEU ARG VAL THR ASP GLY ALA LEU VAL VAL VAL ASP SEQRES 11 T 842 THR ILE GLU GLY VAL CYS VAL GLN THR GLU THR VAL LEU SEQRES 12 T 842 ARG GLN ALA LEU GLY GLU ARG ILE LYS PRO VAL VAL VAL SEQRES 13 T 842 ILE ASN LYS VAL ASP ARG ALA LEU LEU GLU LEU GLN VAL SEQRES 14 T 842 SER LYS GLU ASP LEU TYR GLN THR PHE ALA ARG THR VAL SEQRES 15 T 842 GLU SER VAL ASN VAL ILE VAL SER THR TYR ALA ASP GLU SEQRES 16 T 842 VAL LEU GLY ASP VAL GLN VAL TYR PRO ALA ARG GLY THR SEQRES 17 T 842 VAL ALA PHE GLY SER GLY LEU HIS GLY TRP ALA PHE THR SEQRES 18 T 842 ILE ARG GLN PHE ALA THR ARG TYR ALA LYS LYS PHE GLY SEQRES 19 T 842 VAL ASP LYS ALA LYS MET MET ASP ARG LEU TRP GLY ASP SEQRES 20 T 842 SER PHE PHE ASN PRO LYS THR LYS LYS TRP THR ASN LYS SEQRES 21 T 842 ASP THR ASP ALA GLU GLY LYS PRO LEU GLU ARG ALA PHE SEQRES 22 T 842 ASN MET PHE ILE LEU ASP PRO ILE PHE ARG LEU PHE THR SEQRES 23 T 842 ALA ILE MET ASN PHE LYS LYS ASP GLU ILE PRO VAL LEU SEQRES 24 T 842 LEU GLU LYS LEU GLU ILE VAL LEU LYS GLY ASP GLU LYS SEQRES 25 T 842 ASP LEU GLU GLY LYS ALA LEU LEU LYS VAL VAL MET ARG SEQRES 26 T 842 LYS PHE LEU PRO ALA ALA ASP ALA LEU LEU GLU MET ILE SEQRES 27 T 842 VAL LEU HIS LEU PRO SER PRO VAL THR ALA GLN ALA TYR SEQRES 28 T 842 ARG ALA GLU GLN LEU TYR GLU GLY PRO ALA ASP ASP ALA SEQRES 29 T 842 ASN CYS ILE ALA ILE LYS ASN CYS ASP PRO LYS ALA ASP SEQRES 30 T 842 LEU MET LEU TYR VAL SER LYS MET VAL PRO THR SER ASP SEQRES 31 T 842 LYS GLY ARG PHE TYR ALA PHE GLY ARG VAL PHE ALA GLY SEQRES 32 T 842 THR VAL LYS SER GLY GLN LYS VAL ARG ILE GLN GLY PRO SEQRES 33 T 842 ASN TYR VAL PRO GLY LYS LYS ASP ASP LEU PHE ILE LYS SEQRES 34 T 842 ALA ILE GLN ARG VAL VAL LEU MET MET GLY ARG PHE VAL SEQRES 35 T 842 GLU PRO ILE ASP ASP CYS PRO ALA GLY ASN ILE ILE GLY SEQRES 36 T 842 LEU VAL GLY ILE ASP GLN PHE LEU LEU LYS THR GLY THR SEQRES 37 T 842 LEU THR THR SER GLU THR ALA HIS ASN MET LYS VAL MET SEQRES 38 T 842 LYS PHE SER VAL SER PRO VAL VAL GLN VAL ALA VAL GLU SEQRES 39 T 842 VAL LYS ASN ALA ASN ASP LEU PRO LYS LEU VAL GLU GLY SEQRES 40 T 842 LEU LYS ARG LEU SER LYS SER ASP PRO CYS VAL LEU THR SEQRES 41 T 842 TYR MET SER GLU SER GLY GLU HIS ILE VAL ALA GLY THR SEQRES 42 T 842 GLY GLU LEU HIS LEU GLU ILE CYS LEU GLN ASP LEU GLU SEQRES 43 T 842 HIS ASP HIS ALA GLY VAL PRO LEU LYS ILE SER PRO PRO SEQRES 44 T 842 VAL VAL ALA TYR ARG GLU THR VAL GLU SER GLU SER SER SEQRES 45 T 842 GLN THR ALA LEU SER LYS SER PRO ASN LYS HIS ASN ARG SEQRES 46 T 842 ILE TYR LEU LYS ALA GLU PRO ILE ASP GLU GLU VAL SER SEQRES 47 T 842 LEU ALA ILE GLU ASN GLY ILE ILE ASN PRO ARG ASP ASP SEQRES 48 T 842 PHE LYS ALA ARG ALA ARG ILE MET ALA ASP ASP TYR GLY SEQRES 49 T 842 TRP ASP VAL THR ASP ALA ARG LYS ILE TRP CYS PHE GLY SEQRES 50 T 842 PRO ASP GLY ASN GLY PRO ASN LEU VAL ILE ASP GLN THR SEQRES 51 T 842 LYS ALA VAL GLN TYR LEU HIS GLU ILE LYS ASP SER VAL SEQRES 52 T 842 VAL ALA ALA PHE GLN TRP ALA THR LYS GLU GLY PRO ILE SEQRES 53 T 842 PHE GLY GLU GLU MET ARG SER VAL ARG VAL ASN ILE LEU SEQRES 54 T 842 ASP VAL THR LEU HIS ALA ASP ALA ILE HIS ARG GLY GLY SEQRES 55 T 842 GLY GLN ILE ILE PRO THR MET ARG ARG ALA THR TYR ALA SEQRES 56 T 842 GLY PHE LEU LEU ALA ASP PRO LYS ILE GLN GLU PRO VAL SEQRES 57 T 842 PHE LEU VAL GLU ILE GLN CYS PRO GLU GLN ALA VAL GLY SEQRES 58 T 842 GLY ILE TYR SER VAL LEU ASN LYS LYS ARG GLY GLN VAL SEQRES 59 T 842 VAL SER GLU GLU GLN ARG PRO GLY THR PRO LEU PHE THR SEQRES 60 T 842 VAL LYS ALA TYR LEU PRO VAL ASN GLU SER PHE GLY PHE SEQRES 61 T 842 THR GLY GLU LEU ARG GLN ALA THR GLY GLY GLN ALA PHE SEQRES 62 T 842 PRO GLN MET VAL PHE ASP HIS TRP SER THR LEU GLY SER SEQRES 63 T 842 ASP PRO LEU ASP PRO THR SER LYS ALA GLY GLU ILE VAL SEQRES 64 T 842 LEU ALA ALA ARG LYS ARG HIS GLY MET LYS GLU GLU VAL SEQRES 65 T 842 PRO GLY TRP GLN GLU TYR TYR ASP LYS LEU SEQRES 1 S 35 THR ALA ALA GLU ASN PRO ASN VAL GLU VAL LYS ASP TYR SEQRES 2 S 35 GLY ASP ILE ASP LYS ALA PRO GLU GLU ARG ALA ARG GLY SEQRES 3 S 35 ILE THR ILE ASN THR ALA HIS VAL GLU

HET GNP T 843 32

HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER

FORMUL 3 GNP C10 H17 N6 O13 P3

HELIX 1 1 THR T 5 MET T 13 1 9 HELIX 2 2 ASP T 14 THR T 17 5 4 HELIX 3 3 GLY T 31 GLY T 44 1 14 HELIX 4 4 SER T 82 ILE T 89 1 8 HELIX 5 5 SER T 112 VAL T 121 1 10 HELIX 6 6 CYS T 136 GLY T 148 1 13 HELIX 7 7 LYS T 159 GLU T 166 1 8 HELIX 8 8 SER T 170 ALA T 193 1 24 HELIX 9 9 ASP T 194 GLY T 198 5 5 HELIX 10 10 TYR T 203 GLY T 207 5 5 HELIX 11 11 THR T 221 GLY T 234 1 14 HELIX 12 12 ASP T 236 LEU T 244 1 9 HELIX 13 13 ARG T 271 ILE T 277 1 7 HELIX 14 14 ILE T 277 ASN T 290 1 14 HELIX 15 15 GLU T 295 LEU T 303 1 9 HELIX 16 16 LYS T 308 LEU T 314 5 7 HELIX 17 17 GLU T 315 LEU T 328 1 14 HELIX 18 18 ALA T 330 LEU T 342 1 13 HELIX 19 19 ALA T 348 TYR T 357 1 10 HELIX 20 20 ASP T 363 ASN T 371 1 9 HELIX 21 21 ASN T 497 ASN T 499 5 3 HELIX 22 22 ASP T 500 ASP T 515 1 16 HELIX 23 23 GLY T 534 ASP T 548 1 15 HELIX 24 24 ASP T 594 ASN T 603 1 10 HELIX 25 25 ASP T 611 ASP T 622 1 12 HELIX 26 26 ASP T 626 LYS T 632 1 7 HELIX 27 27 TYR T 655 GLU T 673 1 19 HELIX 28 28 GLY T 701 LEU T 719 1 19 HELIX 29 29 PRO T 736 LYS T 750 1 15 HELIX 30 30 PRO T 773 SER T 777 5 5 HELIX 31 31 GLY T 779 THR T 788 1 10 HELIX 32 32 SER T 813 HIS T 826 1 14 HELIX 33 33 GLY T 834 TYR T 839 5 6 HELIX 34 34 ASP S 46 ILE S 50 5 5 HELIX 35 35 ALA S 53 GLY S 60 1 8

SHEET 1 A 7 VAL T 209 PHE T 211 0 SHEET 2 A 7 LYS T 152 ASN T 158 1 N ILE T 157 O ALA T 210 SHEET 3 A 7 GLY T 124 ASP T 130 1 N VAL T 127 O VAL T 154 SHEET 4 A 7 VAL T 19 ALA T 26 1 N ILE T 25 O VAL T 128 SHEET 5 A 7 SER T 97 ILE T 103 1 O ILE T 103 N MET T 22 SHEET 6 A 7 THR T 73 GLU T 80 -1 N ILE T 75 O LEU T 102 SHEET 7 A 7 HIS S 67 GLU S 69 1 O VAL S 68 N ILE T 75 SHEET 1 B 2 PHE T 249 ASN T 251 0 SHEET 2 B 2 LYS T 256 THR T 258 -1 O THR T 258 N PHE T 249 SHEET 1 C 8 LEU T 426 ALA T 430 0 SHEET 2 C 8 LYS T 410 GLN T 414 -1 N ILE T 413 O PHE T 427 SHEET 3 C 8 GLY T 467 THR T 470 -1 O THR T 470 N ARG T 412 SHEET 4 C 8 MET T 379 PRO T 387 -1 N LEU T 380 O LEU T 469 SHEET 5 C 8 PHE T 394 ALA T 402 -1 O TYR T 395 N VAL T 386 SHEET 6 C 8 ILE T 453 VAL T 457 -1 O LEU T 456 N ALA T 396 SHEET 7 C 8 ARG T 433 MET T 438 -1 N VAL T 435 O GLY T 455 SHEET 8 C 8 PHE T 441 ILE T 445 -1 O ILE T 445 N VAL T 434 SHEET 1 D 2 THR T 404 LYS T 406 0 SHEET 2 D 2 ASP T 447 PRO T 449 -1 O CYS T 448 N VAL T 405 SHEET 1 E 4 LEU T 519 MET T 522 0 SHEET 2 E 4 HIS T 528 GLY T 532 -1 O ALA T 531 N LEU T 519 SHEET 3 E 4 VAL T 489 VAL T 495 -1 N VAL T 489 O GLY T 532 SHEET 4 E 4 LEU T 554 SER T 557 -1 O LYS T 555 N GLU T 494 SHEET 1 F 3 GLU T 680 MET T 681 0 SHEET 2 F 3 ARG T 564 VAL T 567 1 N GLU T 565 O GLU T 680 SHEET 3 F 3 PRO T 722 LYS T 723 -1 O LYS T 723 N THR T 566 SHEET 1 G 5 ALA T 575 LYS T 578 0 SHEET 2 G 5 ARG T 585 PRO T 592 -1 O LEU T 588 N ALA T 575 SHEET 3 G 5 VAL T 684 THR T 692 -1 O ASN T 687 N LYS T 589 SHEET 4 G 5 ASN T 644 ASP T 648 1 N ILE T 647 O VAL T 686 SHEET 5 G 5 ILE T 633 PHE T 636 -1 N TRP T 634 O VAL T 646 SHEET 1 H 3 VAL T 731 CYS T 735 0 SHEET 2 H 3 PHE T 766 TYR T 771 -1 O VAL T 768 N ILE T 733 SHEET 3 H 3 GLN T 753 GLU T 758 -1 N VAL T 755 O LYS T 769

LINK CA VAL T 28 O2G GNP T 843 1555 1555 1.77 LINK C VAL T 28 O2G GNP T 843 1555 1555 1.44 LINK N ASP T 29 PG GNP T 843 1555 1555 1.74 LINK N ASP T 29 O2G GNP T 843 1555 1555 1.13 LINK N GLY T 31 O1B GNP T 843 1555 1555 1.42 LINK OD1 ASP T 161 N2 GNP T 843 1555 1555 1.67 LINK OD2 ASP T 161 N1 GNP T 843 1555 1555 1.92 LINK C SER T 213 O6 GNP T 843 1555 1555 1.84 LINK OG SER T 213 O6 GNP T 843 1555 1555 1.46 LINK OG SER T 213 C6 GNP T 843 1555 1555 1.80 LINK OG SER T 213 N1 GNP T 843 1555 1555 1.77 LINK N LEU T 215 N7 GNP T 843 1555 1555 1.92 LINK CB LEU T 215 C4 GNP T 843 1555 1555 2.00 LINK CD1 LEU T 215 O2' GNP T 843 1555 1555 1.87

CISPEP 1 GLY T 637 PRO T 638 0 -0.26

SITE 1 AC1 17 TYR S 47 ILE S 61 THR S 62 HIS T 27 SITE 2 AC1 17 VAL T 28 ASP T 29 HIS T 30 GLY T 31 SITE 3 AC1 17 LYS T 32 SER T 33 THR T 34 LYS T 159 SITE 4 AC1 17 ASP T 161 SER T 213 GLY T 214 LEU T 215 SITE 5 AC1 17 HIS T 216

CRYST1 381.300 381.300 381.300 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.002623 0.000000 0.000000 0.00000

SCALE2 0.000000 0.002623 0.000000 0.00000

SCALE3 0.000000 0.000000 0.002623 0.00000