10 20 30 40 50 60 70 80 2P86 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 21-MAR-07 2P86
TITLE THE HIGH RESOLUTION CRYSTAL STRUCTURE OF ROHEDSAIN, THE TITLE 2 MAJOR CATHEPSIN L PROTEASE FROM T. BRUCEI RHODESIENSE, TITLE 3 BOUND TO INHIBITOR K11002
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 EC: 3.4.22.15; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI RHODESIENSE; SOURCE 3 ORGANISM_TAXID: 31286; SOURCE 4 STRAIN: RHODESIENSE; SOURCE 5 GENE: RHODESAIN; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC Z
KEYWDS CYSTEINE PROTEASE, TRYPANOSOMA BRUCEI, NEGLECTED DISEASE, KEYWDS 2 HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR L.S.BRINEN,R.MARION
REVDAT 2 24-FEB-09 2P86 1 VERSN REVDAT 1 01-APR-08 2P86 0
JRNL AUTH R.MARION,E.HANSELL,C.CAFFREY,W.R.ROUSH,L.S.BRINEN JRNL TITL THE HIGH RESOLUTION STRUCTURE OF RHODESAIN, THE JRNL TITL 2 MAJOR CATHEPSIN L PROTEASE FROM TRYPANOSOMA BRUCEI JRNL TITL 3 RHODESIENSE, ILLUSTRATES THE BASIS FOR DIFFERENCES JRNL TITL 4 IN INHIBITION PROFILES FROM OTHER PAPAIN FAMILY JRNL TITL 5 CYSTEINE PROTEASES JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 65123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.110 REMARK 3 FREE R VALUE : 0.130 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3463 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.0940 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.1340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.013 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.603 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1775 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1154 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2413 ; 1.876 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2772 ; 1.568 ; 3.010 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 6.686 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;41.123 ;26.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 250 ;11.375 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;14.184 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 255 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2016 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 317 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 396 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1354 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 879 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 837 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 258 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 18 ; 0.254 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 39 ; 0.318 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): 38 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.294 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.339 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1396 ; 1.654 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 455 ; 0.844 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1737 ; 2.393 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 821 ; 3.412 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 668 ; 4.353 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3663 ; 1.654 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 403 ; 9.972 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2887 ; 4.308 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2P86 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB042087.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBEROOT I- REMARK 200 BEAM BEND SINGLE CRYSTAL REMARK 200 OPTICS : FLAT MIRROR, RH COATED REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68633 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.160 REMARK 200 RESOLUTION RANGE LOW (A) : 40.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 14.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2P7U, WITHOUT WATERS OR SMALL MOLECULE INHIBITOR REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.1 M BICINE REMARK 280 PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.82950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.36250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.31400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.36250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.82950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.31400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 104 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 103 129.01 11.80 REMARK 500 ASN A 104 79.72 147.78 REMARK 500 ASP A 114 -175.44 -171.51 REMARK 500 ASP A 161 11.10 -150.63 REMARK 500 SER A 185 164.31 80.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 103 ASN A 104 -146.19 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VS1 A 300 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 901 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 903 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 905 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 906 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 907 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 908 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 910 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 911 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 912 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 913 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 914
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P7U RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF RHODESAIN BOUND TO INHIBITOR K11777
DBREF 2P86 A 1 215 UNP Q95PM0 Q95PM0_TRYBR 126 340
SEQADV 2P86 ALA A 172 UNP Q95PM0 SER 297 ENGINEERED
SEQRES 1 A 215 ALA PRO ALA ALA VAL ASP TRP ARG GLU LYS GLY ALA VAL SEQRES 2 A 215 THR PRO VAL LYS ASP GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 A 215 ALA PHE SER THR ILE GLY ASN ILE GLU GLY GLN TRP GLN SEQRES 4 A 215 VAL ALA GLY ASN PRO LEU VAL SER LEU SER GLU GLN MET SEQRES 5 A 215 LEU VAL SER CYS ASP THR ILE ASP PHE GLY CYS GLY GLY SEQRES 6 A 215 GLY LEU MET ASP ASN ALA PHE ASN TRP ILE VAL ASN SER SEQRES 7 A 215 ASN GLY GLY ASN VAL PHE THR GLU ALA SER TYR PRO TYR SEQRES 8 A 215 VAL SER GLY ASN GLY GLU GLN PRO GLN CYS GLN MET ASN SEQRES 9 A 215 GLY HIS GLU ILE GLY ALA ALA ILE THR ASP HIS VAL ASP SEQRES 10 A 215 LEU PRO GLN ASP GLU ASP ALA ILE ALA ALA TYR LEU ALA SEQRES 11 A 215 GLU ASN GLY PRO LEU ALA ILE ALA VAL ASP ALA THR SER SEQRES 12 A 215 PHE MET ASP TYR ASN GLY GLY ILE LEU THR SER CYS THR SEQRES 13 A 215 SER GLU GLN LEU ASP HIS GLY VAL LEU LEU VAL GLY TYR SEQRES 14 A 215 ASN ASP ALA SER ASN PRO PRO TYR TRP ILE ILE LYS ASN SEQRES 15 A 215 SER TRP SER ASN MET TRP GLY GLU ASP GLY TYR ILE ARG SEQRES 16 A 215 ILE GLU LYS GLY THR ASN GLN CYS LEU MET ASN GLN ALA SEQRES 17 A 215 VAL SER SER ALA VAL VAL GLY
HET VS1 A 300 49 HET EDO A 901 4 HET EDO A 903 4 HET EDO A 905 4 HET EDO A 906 4 HET EDO A 907 4 HET EDO A 908 4 HET EDO A 910 4 HET EDO A 911 4 HET EDO A 912 4 HET EDO A 913 4 HET EDO A 914 4
HETNAM VS1 3-[[N-[MORPHOLIN-N-YL]-CARBONYL]-PHENYLALANINYL- HETNAM 2 VS1 AMINO]-5- PHENYL-PENTANE-1-SULFONYLBENZENE HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 VS1 C31 H37 N3 O5 S FORMUL 3 EDO 11(C2 H6 O2) FORMUL 14 HOH *402(H2 O)
HELIX 1 1 SER A 24 ALA A 41 1 18 HELIX 2 2 SER A 49 ASP A 57 1 9 HELIX 3 3 PHE A 61 GLY A 65 5 5 HELIX 4 4 LEU A 67 ASN A 79 1 13 HELIX 5 5 VAL A 92 GLY A 96 5 5 HELIX 6 6 ASP A 121 GLY A 133 1 13 HELIX 7 7 ASN A 201 MET A 205 5 5
SHEET 1 A 3 ALA A 4 ASP A 6 0 SHEET 2 A 3 HIS A 162 ASN A 170 -1 O TYR A 169 N VAL A 5 SHEET 3 A 3 LEU A 135 VAL A 139 -1 N LEU A 135 O LEU A 166 SHEET 1 B 5 ALA A 4 ASP A 6 0 SHEET 2 B 5 HIS A 162 ASN A 170 -1 O TYR A 169 N VAL A 5 SHEET 3 B 5 TYR A 177 LYS A 181 -1 O LYS A 181 N LEU A 165 SHEET 4 B 5 TYR A 193 GLU A 197 -1 O ILE A 196 N TRP A 178 SHEET 5 B 5 ILE A 151 LEU A 152 1 N LEU A 152 O GLU A 197 SHEET 1 C 2 ASN A 82 PHE A 84 0 SHEET 2 C 2 ILE A 108 ALA A 111 -1 O ALA A 110 N VAL A 83 SHEET 1 D 2 ASP A 114 ASP A 117 0 SHEET 2 D 2 SER A 210 VAL A 213 -1 O VAL A 213 N ASP A 114
SSBOND 1 CYS A 22 CYS A 63 1555 1555 2.05 SSBOND 2 CYS A 56 CYS A 101 1555 1555 2.07 SSBOND 3 CYS A 155 CYS A 203 1555 1555 2.05
LINK SG CYS A 25 C22 VS1 A 300 1555 1555 1.83
CISPEP 1 ASN A 174 PRO A 175 0 2.97
SITE 1 AC1 20 ALA A 1 PRO A 2 ALA A 3 GLN A 19 SITE 2 AC1 20 GLY A 23 CYS A 25 TRP A 26 PHE A 61 SITE 3 AC1 20 CYS A 63 GLY A 65 GLY A 66 LEU A 67 SITE 4 AC1 20 ALA A 138 MET A 145 ASP A 161 HIS A 162 SITE 5 AC1 20 TRP A 184 HOH A 440 HOH A 607 HOH A 691 SITE 1 AC2 8 ASP A 121 GLU A 122 GLY A 199 ASN A 206 SITE 2 AC2 8 HOH A 510 HOH A 558 HOH A 561 HOH A 683 SITE 1 AC3 5 LYS A 17 ASP A 18 TYR A 91 HOH A 505 SITE 2 AC3 5 HOH A 827 SITE 1 AC4 6 THR A 14 LEU A 45 SER A 47 HOH A 466 SITE 2 AC4 6 HOH A 739 HOH A 763 SITE 1 AC5 8 ASP A 18 GLN A 19 GLY A 20 TRP A 184 SITE 2 AC5 8 HOH A 607 HOH A 627 HOH A 665 HOH A 826 SITE 1 AC6 5 GLU A 97 PRO A 99 HOH A 609 HOH A 624 SITE 2 AC6 5 HOH A 782 SITE 1 AC7 6 ALA A 87 THR A 153 HOH A 494 HOH A 653 SITE 2 AC7 6 HOH A 713 HOH A 808 SITE 1 AC8 5 PRO A 15 ASP A 117 HOH A 424 HOH A 445 SITE 2 AC8 5 HOH A 513 SITE 1 AC9 4 ARG A 8 THR A 14 PRO A 15 TYR A 193 SITE 1 BC1 4 ASP A 117 TYR A 128 HOH A 529 HOH A 776 SITE 1 BC2 5 SER A 154 HOH A 491 HOH A 518 HOH A 562 SITE 2 BC2 5 HOH A 713 SITE 1 BC3 2 PHE A 61 HOH A 784
CRYST1 33.659 78.628 80.725 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.029710 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012718 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012388 0.00000