10 20 30 40 50 60 70 80 2P3M - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 09-MAR-07 2P3M
TITLE SOLUTION STRUCTURE OF MJ0056
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN KINASE MJ0056; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.161; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ0056; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30B
KEYWDS RIFT BARREL, PHOSPHOTRANSFERASE, RIBOFLAVIN KINASE
EXPDTA SOLUTION NMR
NUMMDL 20
MDLTYP MINIMIZED AVERAGE
AUTHOR M.COLES,V.TRUFFAULT,S.DJURANOVIC,J.MARTIN,A.N.LUPAS
REVDAT 4 24-FEB-09 2P3M 1 VERSN REVDAT 3 03-JUN-08 2P3M 1 COMPND REVDAT 2 25-DEC-07 2P3M 1 JRNL REVDAT 1 09-OCT-07 2P3M 0
JRNL AUTH M.AMMELBURG,M.D.HARTMANN,S.DJURANOVIC,V.ALVA, JRNL AUTH 2 K.K.KORETKE,J.MARTIN,G.SAUER,V.TRUFFAULT,K.ZETH, JRNL AUTH 3 A.N.LUPAS,M.COLES JRNL TITL A CTP-DEPENDENT ARCHAEAL RIBOFLAVIN KINASE FORMS A JRNL TITL 2 BRIDGE IN THE EVOLUTION OF CRADLE-LOOP BARRELS. JRNL REF STRUCTURE V. 15 1577 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 18073108 JRNL DOI 10.1016/J.STR.2007.09.027
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.9.4 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE SOLVED USING 839, DISTANCE REMARK 3 RESTRAINTS, 56 HBOND RESTRAINTS, 399 DIHEDRAL RESTRAINTS AND REMARK 3 180 J-COUPLING RESTRAINTS.
REMARK 4 REMARK 4 2P3M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB041923.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 150 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.65 MM MJ0056 UNLABELLED MM REMARK 210 PHOSPHATE BUFFER; 150 MM NAC REMARK 210 90% H2O,10% D2O; 0.65 MM REMARK 210 MJ0056 U-15N; 30 MM PHOSPHATE REMARK 210 BUFFER; 150 MM 90% H2O, 10% REMARK 210 D2O; 0.65 MM MJ005 15N,13C; 30 REMARK 210 MM PHOSPHATE BUFFER 150 MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_15N-SEPARATED_ REMARK 210 NOESY, 3D_NNH_NOESY, HNHA, REMARK 210 HNHB, 3D_13C-SEPARATED_NOESY, REMARK 210 3D_CNH_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : DMX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, SPARKY, X-PLOR REMARK 210 NIH 2.9.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REPRESENTATIVE CONFORMER IS THE REGULARISED AVERAGE REMARK 210 STRUCTURE
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 15 -46.69 -155.16 REMARK 500 2 TYR A 100 -60.01 -94.90 REMARK 500 3 LEU A 15 -47.45 -154.97 REMARK 500 3 PHE A 21 33.67 -148.24 REMARK 500 3 LYS A 134 -59.82 -154.27 REMARK 500 4 PHE A 21 35.35 -154.81 REMARK 500 4 ASP A 133 -60.05 -155.04 REMARK 500 5 LEU A 15 -52.57 -155.07 REMARK 500 6 LEU A 15 -49.04 -143.04 REMARK 500 7 ASP A 133 33.31 -154.99 REMARK 500 8 LEU A 15 -60.05 -153.55 REMARK 500 9 LEU A 15 30.76 -99.40 REMARK 500 10 ASP A 133 78.86 -155.07 REMARK 500 11 LEU A 15 -45.69 -155.11 REMARK 500 12 GLU A 17 100.50 -163.53 REMARK 500 13 GLU A 17 32.48 -99.77 REMARK 500 14 LEU A 15 -46.84 -155.11 REMARK 500 14 ASP A 135 -48.26 -138.34 REMARK 500 15 VAL A 2 68.50 -152.53 REMARK 500 15 LEU A 15 -47.80 -155.11 REMARK 500 16 ARG A 19 38.69 -141.79 REMARK 500 17 GLU A 17 32.64 -99.95 REMARK 500 18 SER A 23 31.25 -94.65 REMARK 500 19 LYS A 3 50.58 -140.84 REMARK 500 20 LEU A 15 -48.68 -143.39 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VBS RELATED DB: PDB REMARK 900 RELATED ID: 2VBU RELATED DB: PDB REMARK 900 RELATED ID: 2VBT RELATED DB: PDB REMARK 900 RELATED ID: 2VBV RELATED DB: PDB
DBREF 2P3M A 1 136 UNP Q60365 Y056_METJA 1 136
SEQRES 1 A 136 MET VAL LYS LEU MET ILE ILE GLU GLY GLU VAL VAL SER SEQRES 2 A 136 GLY LEU GLY GLU GLY ARG TYR PHE LEU SER LEU PRO PRO SEQRES 3 A 136 TYR LYS GLU ILE PHE LYS LYS ILE LEU GLY PHE GLU PRO SEQRES 4 A 136 TYR GLU GLY THR LEU ASN LEU LYS LEU ASP ARG GLU PHE SEQRES 5 A 136 ASP ILE ASN LYS PHE LYS TYR ILE GLU THR GLU ASP PHE SEQRES 6 A 136 GLU PHE ASN GLY LYS ARG PHE PHE GLY VAL LYS VAL LEU SEQRES 7 A 136 PRO ILE LYS ILE LEU ILE GLY ASN LYS LYS ILE ASP GLY SEQRES 8 A 136 ALA ILE VAL VAL PRO LYS LYS THR TYR HIS SER SER GLU SEQRES 9 A 136 ILE ILE GLU ILE ILE ALA PRO MET LYS LEU ARG GLU GLN SEQRES 10 A 136 PHE ASN LEU LYS ASP GLY ASP VAL ILE LYS ILE LEU ILE SEQRES 11 A 136 LYS GLY ASP LYS ASP GLU
HELIX 1 1 LEU A 24 GLY A 36 1 13 HELIX 2 2 ASP A 53 PHE A 57 5 5 HELIX 3 3 LYS A 113 PHE A 118 1 6
SHEET 1 A 8 ILE A 60 THR A 62 0 SHEET 2 A 8 VAL A 75 ILE A 84 -1 O VAL A 77 N ILE A 60 SHEET 3 A 8 VAL A 125 ILE A 130 -1 O LYS A 127 N LEU A 83 SHEET 4 A 8 MET A 5 VAL A 12 -1 N ILE A 7 O ILE A 128 SHEET 5 A 8 LEU A 44 LYS A 47 -1 O ASN A 45 N VAL A 12 SHEET 6 A 8 ILE A 105 ILE A 109 -1 O ILE A 106 N LEU A 46 SHEET 7 A 8 LYS A 87 PRO A 96 -1 N VAL A 94 O GLU A 107 SHEET 8 A 8 VAL A 75 ILE A 84 -1 N LYS A 76 O VAL A 95 SHEET 1 B 2 PHE A 65 PHE A 67 0 SHEET 2 B 2 LYS A 70 PHE A 72 -1 O LYS A 70 N PHE A 67
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000