10 20 30 40 50 60 70 80 2OZX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 27-FEB-07 2OZX
TITLE SOLUTION STRUCTURE OF HUMAN PHOSPHOHISTIDINE PHOSPHATASE 1 TITLE 2 IN PHOSPHATE FREE FORM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14 KDA PHOSPHOHISTIDINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOHISTIDINE PHOSPHATASE 1, PROTEIN JANUS-A COMPND 5 HOMOLOG; COMPND 6 EC: 3.1.3.-; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS ALPHA/BETA ARCHITECTURE, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 21
MDLTYP MINIMIZED AVERAGE
AUTHOR W.GONG,G.CUI,C.JIN,B.XIA
REVDAT 3 10-MAR-09 2OZX 1 JRNL REVDAT 2 24-FEB-09 2OZX 1 VERSN REVDAT 1 25-MAR-08 2OZX 0
JRNL AUTH W.GONG,Y.LI,G.CUI,J.HU,H.FANG,C.JIN,B.XIA JRNL TITL SOLUTION STRUCTURE AND CATALYTIC MECHANISM OF JRNL TITL 2 HUMAN PROTEIN HISTIDINE PHOSPHATASE 1. JRNL REF BIOCHEM.J. V. 418 337 2009 JRNL REFN ISSN 0264-6021 JRNL PMID 18991813 JRNL DOI 10.1042/BJ20081571
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7.0 REMARK 3 AUTHORS : DAVID, A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSION ANGLE DYNAMICS PERFORMED BY REMARK 3 DYANA, SIMULATED ANNEALING PERFORMED BY AMBER
REMARK 4 REMARK 4 2OZX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB041793.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 1MM PHPT1, 50MM TRIS, 50MM REMARK 210 NACL, 30MM DTT; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCACB,CBCA(CO)NH, HC(C)H REMARK 210 COSY, 3D_13C-SEPARATED_NOESY, REMARK 210 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, NMRVIEW 5.0, REMARK 210 DYANA CYANA2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 10 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 11 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 12 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 14 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 20 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 21 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 17 16.73 -156.52 REMARK 500 1 ALA A 30 61.02 -154.27 REMARK 500 1 ARG A 32 26.65 45.44 REMARK 500 1 ALA A 38 32.46 -151.03 REMARK 500 1 SER A 83 25.09 45.52 REMARK 500 1 GLN A 84 -56.11 -164.30 REMARK 500 1 LYS A 86 -79.58 70.84 REMARK 500 1 TYR A 97 -57.90 -141.01 REMARK 500 2 ASP A 15 74.84 -155.92 REMARK 500 2 ALA A 30 46.25 -147.33 REMARK 500 2 ALA A 38 31.11 -151.47 REMARK 500 2 GLN A 82 55.42 -150.22 REMARK 500 2 ASP A 85 -25.19 -147.24 REMARK 500 2 TYR A 97 -47.63 -142.75 REMARK 500 2 ASN A 122 27.65 -146.64 REMARK 500 3 ASP A 17 -35.37 -165.86 REMARK 500 3 ALA A 30 61.44 -154.03 REMARK 500 3 ARG A 32 -61.38 65.92 REMARK 500 3 SER A 33 -33.19 -171.11 REMARK 500 3 ALA A 38 30.21 -148.38 REMARK 500 3 GLN A 84 -17.63 -157.33 REMARK 500 3 LYS A 86 -162.66 53.80 REMARK 500 3 LYS A 87 -144.81 -135.45 REMARK 500 3 SER A 94 -25.55 50.53 REMARK 500 3 MET A 95 -48.39 66.58 REMARK 500 3 TYR A 97 -50.25 -133.93 REMARK 500 3 TYR A 113 57.59 38.25 REMARK 500 4 ALA A 30 57.31 -149.36 REMARK 500 4 ARG A 32 26.04 47.34 REMARK 500 4 ALA A 38 31.50 -145.70 REMARK 500 4 GLN A 84 -26.30 51.48 REMARK 500 4 LYS A 87 -179.86 54.53 REMARK 500 4 TYR A 97 -54.53 -128.17 REMARK 500 4 TYR A 116 -140.87 50.78 REMARK 500 4 ASN A 122 23.69 -147.98 REMARK 500 5 ASP A 17 25.41 -149.84 REMARK 500 5 ALA A 30 61.83 -154.00 REMARK 500 5 ARG A 32 23.72 48.18 REMARK 500 5 ALA A 38 28.53 -149.79 REMARK 500 5 GLN A 84 14.57 -154.24 REMARK 500 5 TYR A 93 24.81 -141.90 REMARK 500 5 SER A 94 -174.89 59.46 REMARK 500 5 ALA A 96 -28.83 -145.24 REMARK 500 5 TYR A 97 -52.54 -139.89 REMARK 500 5 ASP A 115 -48.19 -156.09 REMARK 500 6 SER A 16 22.82 -152.89 REMARK 500 6 ALA A 30 60.20 -153.90 REMARK 500 6 ARG A 32 16.17 53.12 REMARK 500 6 ALA A 38 26.17 -150.36 REMARK 500 6 SER A 83 -37.17 -144.44 REMARK 500 6 TYR A 97 -52.20 -136.32 REMARK 500 6 TYR A 113 -52.62 -158.88 REMARK 500 6 ALA A 121 -32.08 -149.93 REMARK 500 6 ASN A 122 62.69 38.98 REMARK 500 7 SER A 16 41.75 -75.28 REMARK 500 7 ALA A 30 65.46 -160.57 REMARK 500 7 ARG A 32 21.90 48.88 REMARK 500 7 ALA A 38 27.94 -149.97 REMARK 500 7 GLN A 82 171.16 59.67 REMARK 500 7 SER A 83 -20.72 64.10 REMARK 500 7 TYR A 91 -167.13 -169.31 REMARK 500 7 ASN A 122 48.26 -78.36 REMARK 500 8 ASP A 15 90.30 -61.90 REMARK 500 8 ALA A 30 66.45 -156.05 REMARK 500 8 PRO A 36 35.70 -78.45 REMARK 500 8 ALA A 38 28.39 -152.32 REMARK 500 8 SER A 83 -93.63 -150.46 REMARK 500 8 TYR A 97 -43.77 -132.97 REMARK 500 8 TYR A 116 46.17 -81.93 REMARK 500 8 ASN A 122 46.25 -147.76 REMARK 500 9 ASP A 15 81.74 -66.56 REMARK 500 9 LYS A 21 159.39 56.26 REMARK 500 9 ALA A 30 65.97 -153.48 REMARK 500 9 PRO A 36 32.99 -86.54 REMARK 500 9 ALA A 38 28.46 49.11 REMARK 500 9 LYS A 86 46.73 39.68 REMARK 500 9 TYR A 97 -50.68 -134.90 REMARK 500 10 ASP A 17 18.13 -149.68 REMARK 500 10 ALA A 30 52.70 -151.41 REMARK 500 10 PRO A 36 39.53 -75.92 REMARK 500 10 ALA A 38 28.92 -140.81 REMARK 500 10 SER A 83 -58.36 -149.61 REMARK 500 10 GLN A 84 58.50 -151.68 REMARK 500 10 LYS A 87 162.37 62.76 REMARK 500 10 ASN A 122 37.68 -150.26 REMARK 500 11 ASP A 17 -36.71 -157.69 REMARK 500 11 ALA A 30 67.81 -159.35 REMARK 500 11 ARG A 32 39.06 37.03 REMARK 500 11 ALA A 38 28.05 -151.06 REMARK 500 11 HIS A 53 -46.57 63.38 REMARK 500 11 GLN A 84 51.88 -157.68 REMARK 500 11 ALA A 96 -32.42 -140.29 REMARK 500 11 TYR A 97 -46.13 -137.38 REMARK 500 11 ASP A 115 -120.91 49.10 REMARK 500 11 TYR A 116 -35.48 -133.48 REMARK 500 12 SER A 16 27.04 -142.65 REMARK 500 12 ALA A 30 62.31 -154.93 REMARK 500 12 ARG A 32 19.34 51.66 REMARK 500 12 ALA A 38 39.50 -153.67 REMARK 500 12 TYR A 97 -48.91 -146.43 REMARK 500 12 ALA A 100 27.95 -73.33 REMARK 500 12 TYR A 113 58.19 38.09 REMARK 500 12 ASN A 122 52.98 -144.19 REMARK 500 13 SER A 16 16.58 -61.76 REMARK 500 13 ALA A 30 68.11 -151.37 REMARK 500 13 ARG A 32 20.99 45.86 REMARK 500 13 PRO A 36 32.83 -85.55 REMARK 500 13 ALA A 38 26.74 48.82 REMARK 500 13 GLN A 84 -33.76 -158.33 REMARK 500 13 LYS A 86 73.03 -66.38 REMARK 500 13 MET A 95 28.73 -77.81 REMARK 500 13 ALA A 96 -41.50 -147.36 REMARK 500 13 TYR A 97 -51.28 -133.42 REMARK 500 13 HIS A 102 -30.91 -39.09 REMARK 500 13 ASN A 122 37.94 -144.21 REMARK 500 14 SER A 16 60.95 -68.05 REMARK 500 14 ASP A 17 39.58 -77.04 REMARK 500 14 LYS A 21 146.30 64.17 REMARK 500 14 ALA A 30 62.15 -155.72 REMARK 500 14 ARG A 32 25.38 47.69 REMARK 500 14 ALA A 38 29.77 -150.06 REMARK 500 14 SER A 83 166.53 64.94 REMARK 500 14 TYR A 97 -58.91 -130.15 REMARK 500 14 ASN A 122 48.27 -80.74 REMARK 500 15 ASP A 15 24.01 -140.25 REMARK 500 15 ALA A 30 59.35 -150.12 REMARK 500 15 ARG A 32 21.19 45.26 REMARK 500 15 ALA A 38 30.56 -150.15 REMARK 500 15 SER A 83 -94.84 -162.26 REMARK 500 15 LYS A 86 46.73 -79.60 REMARK 500 15 TYR A 97 -41.68 -149.35 REMARK 500 15 ALA A 100 34.50 -76.87 REMARK 500 15 GLN A 101 59.31 35.28 REMARK 500 15 ASN A 122 51.42 -140.52 REMARK 500 16 ALA A 30 54.95 -147.90 REMARK 500 16 ARG A 32 29.25 41.12 REMARK 500 16 PRO A 36 49.50 -77.23 REMARK 500 16 ALA A 38 26.61 -142.57 REMARK 500 16 GLN A 84 22.23 -143.81 REMARK 500 16 ASN A 122 34.64 -149.30 REMARK 500 17 ASP A 15 35.62 -145.71 REMARK 500 17 ASP A 17 40.64 -75.23 REMARK 500 17 ALA A 30 67.74 -157.86 REMARK 500 17 PRO A 36 44.49 -81.64 REMARK 500 17 ALA A 38 27.98 -151.55 REMARK 500 17 ASP A 85 -39.57 -143.08 REMARK 500 17 TYR A 97 -50.48 -135.71 REMARK 500 17 TYR A 113 60.63 36.83 REMARK 500 17 GLU A 117 146.43 65.27 REMARK 500 18 ASP A 15 81.14 -64.46 REMARK 500 18 ALA A 30 71.07 -157.00 REMARK 500 18 PRO A 36 41.66 -79.65 REMARK 500 18 ALA A 38 27.52 -150.04 REMARK 500 18 ASP A 85 -7.45 65.07 REMARK 500 18 TYR A 97 -55.63 -146.68 REMARK 500 18 ASN A 122 20.27 -145.33 REMARK 500 19 ASP A 15 83.09 -154.55 REMARK 500 19 ALA A 30 62.40 -151.42 REMARK 500 19 PRO A 36 42.96 -79.90 REMARK 500 19 ALA A 38 16.79 -155.21 REMARK 500 19 ASP A 85 -43.30 -157.68 REMARK 500 19 TYR A 97 -37.11 -150.56 REMARK 500 19 ALA A 100 32.75 -74.44 REMARK 500 19 GLN A 101 55.45 37.66 REMARK 500 19 GLU A 117 31.77 -77.94 REMARK 500 19 ALA A 121 -23.52 -143.89 REMARK 500 20 ALA A 30 62.17 -156.48 REMARK 500 20 ARG A 32 26.96 44.76 REMARK 500 20 ALA A 38 25.17 -150.10 REMARK 500 20 TYR A 97 -59.03 -148.11 REMARK 500 20 GLU A 117 36.49 -140.71 REMARK 500 21 ASP A 17 -35.34 -163.92 REMARK 500 21 ALA A 30 59.58 -150.78 REMARK 500 21 ARG A 32 16.73 52.20 REMARK 500 21 ALA A 38 30.09 -150.75 REMARK 500 21 ASP A 85 -32.93 -144.91 REMARK 500 21 ALA A 96 -44.97 -152.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 45 0.10 SIDE_CHAIN REMARK 500 2 ARG A 45 0.10 SIDE_CHAIN REMARK 500 3 ARG A 45 0.11 SIDE_CHAIN REMARK 500 4 ARG A 45 0.12 SIDE_CHAIN REMARK 500 5 ARG A 45 0.10 SIDE_CHAIN REMARK 500 5 TYR A 125 0.07 SIDE_CHAIN REMARK 500 6 ARG A 45 0.10 SIDE_CHAIN REMARK 500 7 ARG A 45 0.10 SIDE_CHAIN REMARK 500 8 ARG A 45 0.10 SIDE_CHAIN REMARK 500 9 ARG A 45 0.11 SIDE_CHAIN REMARK 500 10 ARG A 45 0.12 SIDE_CHAIN REMARK 500 11 ARG A 45 0.12 SIDE_CHAIN REMARK 500 12 ARG A 45 0.11 SIDE_CHAIN REMARK 500 13 ARG A 45 0.12 SIDE_CHAIN REMARK 500 14 ARG A 45 0.10 SIDE_CHAIN REMARK 500 15 ARG A 45 0.09 SIDE_CHAIN REMARK 500 16 ARG A 45 0.10 SIDE_CHAIN REMARK 500 17 ARG A 45 0.11 SIDE_CHAIN REMARK 500 18 ARG A 45 0.09 SIDE_CHAIN REMARK 500 19 ARG A 45 0.10 SIDE_CHAIN REMARK 500 21 ARG A 45 0.11 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AI6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF PHPT1 IN PBS BUFFER REMARK 900 RELATED ID: 2OZW RELATED DB: PDB REMARK 900 STRUCTURE IN PBS BUFFER WITH PHOSPHATE LIGAND
DBREF 2OZX A 1 125 UNP Q9NRX4 PHP14_HUMAN 1 125
SEQRES 1 A 125 MET ALA VAL ALA ASP LEU ALA LEU ILE PRO ASP VAL ASP SEQRES 2 A 125 ILE ASP SER ASP GLY VAL PHE LYS TYR VAL LEU ILE ARG SEQRES 3 A 125 VAL HIS SER ALA PRO ARG SER GLY ALA PRO ALA ALA GLU SEQRES 4 A 125 SER LYS GLU ILE VAL ARG GLY TYR LYS TRP ALA GLU TYR SEQRES 5 A 125 HIS ALA ASP ILE TYR ASP LYS VAL SER GLY ASP MET GLN SEQRES 6 A 125 LYS GLN GLY CYS ASP CYS GLU CYS LEU GLY GLY GLY ARG SEQRES 7 A 125 ILE SER HIS GLN SER GLN ASP LYS LYS ILE HIS VAL TYR SEQRES 8 A 125 GLY TYR SER MET ALA TYR GLY PRO ALA GLN HIS ALA ILE SEQRES 9 A 125 SER THR GLU LYS ILE LYS ALA LYS TYR PRO ASP TYR GLU SEQRES 10 A 125 VAL THR TRP ALA ASN ASP GLY TYR
HELIX 1 1 PRO A 31 GLY A 34 5 4 HELIX 2 2 TYR A 52 GLY A 68 1 17 HELIX 3 3 GLN A 101 TYR A 113 1 13
SHEET 1 A 6 VAL A 12 ILE A 14 0 SHEET 2 A 6 SER A 40 GLY A 46 1 O VAL A 44 N ASP A 13 SHEET 3 A 6 VAL A 19 SER A 29 -1 N VAL A 27 O LYS A 41 SHEET 4 A 6 CYS A 69 SER A 80 -1 O GLU A 72 N ARG A 26 SHEET 5 A 6 ILE A 88 TYR A 91 -1 O TYR A 91 N ARG A 78 SHEET 6 A 6 VAL A 118 TRP A 120 1 O THR A 119 N VAL A 90
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000