10 20 30 40 50 60 70 80 2OSQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 06-FEB-07 2OSQ
TITLE NMR STRUCTURE OF RRM-1 OF YEAST NPL3 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLAR PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM 1 DOMAIN (RESIDUES 121-194); COMPND 5 SYNONYM: MITOCHONDRIAL TARGETING SUPPRESSOR 1 PROTEIN, COMPND 6 NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN 1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NOP3, MTS1, NAB1, NPL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET151
KEYWDS NPL3, RRM, SR PROTEIN, MRNA, RNA-BINDING, RNA BINDING KEYWDS 2 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR P.DEKA,M.BUCHELI,L.SKRISOVSKA,F.H.ALLAIN,C.MOORE, AUTHOR 2 S.BURATOWSKI,G.VARANI
REVDAT 2 24-FEB-09 2OSQ 1 VERSN REVDAT 1 18-DEC-07 2OSQ 0
JRNL AUTH P.DEKA,M.E.BUCHELI,C.MOORE,S.BURATOWSKI,G.VARANI JRNL TITL STRUCTURE OF THE YEAST SR PROTEIN NPL3 AND JRNL TITL 2 INTERACTION WITH MRNA 3'-END PROCESSING SIGNALS. JRNL REF J.MOL.BIOL. V. 375 136 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18022637 JRNL DOI 10.1016/J.JMB.2007.09.029
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, P. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2OSQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB041538.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20MM POTASSIUM PHOSPHATE, REMARK 210 20MM POTASSIUM CHLORIDE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, 3D_13C-SEPARATED_ REMARK 210 NOESY, 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX, INOVA, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 12 118.54 178.99 REMARK 500 1 PRO A 19 -161.49 -69.75 REMARK 500 1 PRO A 33 60.36 -69.75 REMARK 500 1 PHE A 34 -41.54 -148.89 REMARK 500 1 PRO A 36 91.50 -69.81 REMARK 500 1 ASN A 44 93.77 -60.98 REMARK 500 1 GLU A 63 -61.79 -94.94 REMARK 500 1 PHE A 69 132.50 -171.97 REMARK 500 2 LEU A 8 177.17 -58.54 REMARK 500 2 ARG A 12 121.73 179.92 REMARK 500 2 PRO A 19 -162.04 -69.73 REMARK 500 2 PRO A 33 59.68 -69.77 REMARK 500 2 PHE A 34 -41.63 -148.37 REMARK 500 2 PRO A 36 87.87 -69.79 REMARK 500 2 ASN A 44 91.76 -62.94 REMARK 500 2 GLU A 63 -64.34 -93.17 REMARK 500 2 PHE A 69 138.33 -172.16 REMARK 500 3 ARG A 12 120.82 -179.72 REMARK 500 3 PRO A 19 -161.72 -69.79 REMARK 500 3 PRO A 33 60.09 -69.77 REMARK 500 3 PHE A 34 -41.05 -151.47 REMARK 500 3 PRO A 36 94.14 -69.73 REMARK 500 3 ASN A 44 90.33 -63.28 REMARK 500 3 GLU A 63 -67.62 -91.50 REMARK 500 3 LYS A 67 -177.85 -69.41 REMARK 500 3 PHE A 69 136.79 -172.19 REMARK 500 4 ARG A 12 120.47 -179.42 REMARK 500 4 PRO A 19 -161.44 -69.79 REMARK 500 4 PRO A 33 60.12 -69.73 REMARK 500 4 PHE A 34 -42.28 -150.77 REMARK 500 4 PRO A 36 94.88 -69.74 REMARK 500 4 ASN A 44 94.65 -58.73 REMARK 500 4 GLU A 63 -66.12 -95.97 REMARK 500 4 PHE A 69 129.68 -172.31 REMARK 500 5 ARG A 12 117.54 179.30 REMARK 500 5 PRO A 19 -161.61 -69.83 REMARK 500 5 PRO A 33 59.48 -69.72 REMARK 500 5 PHE A 34 -42.05 -149.85 REMARK 500 5 PRO A 36 93.85 -69.71 REMARK 500 5 ASN A 44 94.43 -60.83 REMARK 500 5 GLU A 63 -66.19 -93.54 REMARK 500 5 PHE A 69 130.71 -171.69 REMARK 500 6 ARG A 12 121.02 -179.83 REMARK 500 6 PRO A 19 -162.55 -69.77 REMARK 500 6 PRO A 33 60.30 -69.74 REMARK 500 6 PHE A 34 -42.26 -149.90 REMARK 500 6 PRO A 36 85.72 -69.69 REMARK 500 6 ASN A 44 94.05 -59.08 REMARK 500 6 GLU A 63 -65.00 -94.69 REMARK 500 6 PHE A 69 132.69 -172.50 REMARK 500 7 ARG A 12 120.57 -179.86 REMARK 500 7 PRO A 19 -162.33 -69.78 REMARK 500 7 PRO A 33 59.58 -69.83 REMARK 500 7 PHE A 34 -42.49 -150.33 REMARK 500 7 PRO A 36 98.34 -69.78 REMARK 500 7 ASN A 44 91.76 -62.29 REMARK 500 7 PHE A 69 135.56 -171.61 REMARK 500 8 ARG A 12 122.12 -179.78 REMARK 500 8 PRO A 19 -162.26 -69.74 REMARK 500 8 PRO A 33 59.38 -69.75 REMARK 500 8 PHE A 34 -41.73 -149.59 REMARK 500 8 PRO A 36 93.37 -69.76 REMARK 500 8 ASN A 44 89.12 -63.39 REMARK 500 8 GLU A 63 -66.91 -90.08 REMARK 500 8 PHE A 69 129.79 -172.05 REMARK 500 9 LEU A 8 170.56 -59.64 REMARK 500 9 ARG A 12 123.04 -179.92 REMARK 500 9 PRO A 19 -161.16 -69.76 REMARK 500 9 PRO A 33 59.56 -69.76 REMARK 500 9 PHE A 34 -41.09 -150.23 REMARK 500 9 ASN A 44 92.10 -64.61 REMARK 500 9 PHE A 69 133.93 -171.93 REMARK 500 10 LEU A 8 173.76 -57.84 REMARK 500 10 ARG A 12 116.57 179.52 REMARK 500 10 PRO A 19 -160.88 -69.74 REMARK 500 10 PRO A 33 60.61 -69.83 REMARK 500 10 PHE A 34 -41.87 -148.59 REMARK 500 10 PRO A 36 87.62 -69.76 REMARK 500 10 ASN A 44 93.75 -63.14 REMARK 500 10 GLU A 63 -61.02 -91.29 REMARK 500 10 PHE A 69 131.24 -171.78 REMARK 500 11 ARG A 12 115.59 179.27 REMARK 500 11 PRO A 19 -161.28 -69.75 REMARK 500 11 PRO A 33 59.67 -69.79 REMARK 500 11 PHE A 34 -41.95 -150.04 REMARK 500 11 PRO A 36 93.47 -69.79 REMARK 500 11 ASN A 44 94.59 -61.09 REMARK 500 11 PHE A 69 132.19 -171.84 REMARK 500 12 ARG A 12 118.49 178.89 REMARK 500 12 PRO A 19 -161.08 -69.72 REMARK 500 12 PRO A 33 59.21 -69.78 REMARK 500 12 PHE A 34 -41.64 -148.36 REMARK 500 12 ASN A 44 92.56 -63.56 REMARK 500 12 PHE A 69 131.34 -172.14 REMARK 500 12 TYR A 78 98.38 -68.20 REMARK 500 13 ARG A 12 118.77 178.64 REMARK 500 13 PRO A 19 -160.34 -69.80 REMARK 500 13 PRO A 33 61.16 -69.78 REMARK 500 13 PHE A 34 -42.35 -148.29 REMARK 500 13 PRO A 36 85.87 -69.74 REMARK 500 13 ASN A 44 94.52 -61.89 REMARK 500 13 GLU A 63 -62.62 -93.97 REMARK 500 13 PHE A 69 136.12 -172.23 REMARK 500 14 ARG A 12 116.12 179.48 REMARK 500 14 PRO A 19 -161.61 -69.72 REMARK 500 14 PRO A 33 59.97 -69.77 REMARK 500 14 PHE A 34 -41.57 -150.65 REMARK 500 14 PRO A 36 97.73 -69.72 REMARK 500 14 ASN A 44 89.21 -63.93 REMARK 500 14 GLU A 63 -67.28 -95.09 REMARK 500 14 PHE A 69 131.12 -171.84 REMARK 500 15 ARG A 12 116.96 179.16 REMARK 500 15 PRO A 19 -161.62 -69.79 REMARK 500 15 PRO A 33 59.98 -69.74 REMARK 500 15 PHE A 34 -41.10 -150.45 REMARK 500 15 PRO A 36 95.59 -69.74 REMARK 500 15 ASN A 44 93.65 -60.86 REMARK 500 15 PHE A 69 130.75 -172.19 REMARK 500 16 ARG A 12 121.22 -179.59 REMARK 500 16 PRO A 19 -161.98 -69.74 REMARK 500 16 PRO A 33 59.93 -69.71 REMARK 500 16 PHE A 34 -42.24 -150.34 REMARK 500 16 PRO A 36 94.88 -69.79 REMARK 500 16 ASN A 44 90.46 -63.03 REMARK 500 16 GLU A 63 -67.94 -94.99 REMARK 500 16 PHE A 69 140.63 -171.77 REMARK 500 17 LEU A 8 170.83 -58.03 REMARK 500 17 ARG A 12 122.13 -179.98 REMARK 500 17 PRO A 19 -160.88 -69.75 REMARK 500 17 PRO A 33 60.51 -69.79 REMARK 500 17 PHE A 34 -41.97 -150.57 REMARK 500 17 PRO A 36 96.82 -69.79 REMARK 500 17 ASN A 44 91.23 -65.49 REMARK 500 17 GLU A 63 -65.39 -91.02 REMARK 500 17 PHE A 69 134.37 -172.01 REMARK 500 18 ARG A 12 117.92 179.23 REMARK 500 18 PRO A 19 -161.24 -69.78 REMARK 500 18 PRO A 33 60.08 -69.76 REMARK 500 18 PHE A 34 -43.02 -149.82 REMARK 500 18 ASN A 44 88.65 -64.16 REMARK 500 18 GLU A 63 -66.47 -91.29 REMARK 500 18 PHE A 69 133.34 -172.08 REMARK 500 19 ARG A 12 120.87 -179.45 REMARK 500 19 PRO A 19 -161.46 -69.83 REMARK 500 19 PRO A 33 60.60 -69.85 REMARK 500 19 PHE A 34 -41.52 -148.18 REMARK 500 19 PRO A 36 92.32 -69.80 REMARK 500 19 ASN A 44 94.93 -64.83 REMARK 500 19 PHE A 69 133.27 -172.23 REMARK 500 19 TYR A 78 99.94 -68.73 REMARK 500 20 ARG A 12 121.50 -179.65 REMARK 500 20 PRO A 19 -161.70 -69.83 REMARK 500 20 PRO A 33 59.83 -69.79 REMARK 500 20 PHE A 34 -42.30 -149.89 REMARK 500 20 ASN A 44 90.14 -63.26 REMARK 500 20 PHE A 69 139.97 -171.94 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OSR RELATED DB: PDB
DBREF 2OSQ A 7 80 UNP Q01560 NOP3_YEAST 121 194
SEQRES 1 A 74 GLU LEU SER ASN THR ARG LEU PHE VAL ARG PRO PHE PRO SEQRES 2 A 74 LEU ASP VAL GLN GLU SER GLU LEU ASN GLU ILE PHE GLY SEQRES 3 A 74 PRO PHE GLY PRO MET LYS GLU VAL LYS ILE LEU ASN GLY SEQRES 4 A 74 PHE ALA PHE VAL GLU PHE GLU GLU ALA GLU SER ALA ALA SEQRES 5 A 74 LYS ALA ILE GLU GLU VAL HIS GLY LYS SER PHE ALA ASN SEQRES 6 A 74 GLN PRO LEU GLU VAL VAL TYR SER LYS
HELIX 1 1 GLN A 23 GLY A 32 1 10 HELIX 2 2 GLU A 53 VAL A 64 1 12
SHEET 1 A 4 MET A 37 LEU A 43 0 SHEET 2 A 4 PHE A 46 PHE A 51 -1 O PHE A 48 N LYS A 41 SHEET 3 A 4 LEU A 13 VAL A 15 -1 N LEU A 13 O VAL A 49 SHEET 4 A 4 VAL A 76 TYR A 78 -1 O VAL A 77 N PHE A 14 SHEET 1 B 2 SER A 68 PHE A 69 0 SHEET 2 B 2 GLN A 72 PRO A 73 -1 O GLN A 72 N PHE A 69
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000