10 20 30 40 50 60 70 80 2OS6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 05-FEB-07 2OS6
TITLE SOLUTION STRUCTURE OF LARG PDZ DOMAIN IN COMPLEX WITH C- TITLE 2 TERMINAL OCTA-PEPTIDE OF PLEXIN B1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: LARG PROTEIN, LEUKEMIA-ASSOCIATED RHOGEF; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: C-TERMINAL PEPTIDE OF PLEXIN-B1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SEMAPHORIN RECEPTOR SEP; COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B (+); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS
KEYWDS NERVE SYSTEM DEVELOPMENT, CYTOSKELETON REARRANGEMENT, CELL KEYWDS 2 ADHESION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.LIU,H.HUANG,Y.YANG
REVDAT 2 24-FEB-09 2OS6 1 VERSN REVDAT 1 12-FEB-08 2OS6 0
JRNL AUTH J.LIU,H.HUANG,Y.YANG JRNL TITL SOLUTION STRUCTURE OF THE LARG PDZ DOMAIN IN JRNL TITL 2 COMPLEX WITH C-TERMINAL PEPTIDE OF PLEXIN B1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CSI 1.0 CSI 1.0 REMARK 3 AUTHORS : DAVID S. WISHART REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE COMPLEX STRUCTURE IS SOLVED REMARK 3 USING A TOTAL OF 1306 EXPERIMENTAL RESTRAINTS THAT INCLUDE REMARK 3 1155 INTRAMOLECULAR NOES, 90 DIHEDRAL ANGLE RESTRAINTS AND 61 REMARK 3 INTERMOLECULAR NOES DERIVED FROM NMR SPECTROSCOPY
REMARK 4 REMARK 4 2OS6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB041519.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 MM PHOSPHATE BUFFER, 50MM REMARK 210 NACL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 0.8MM 15N, 13C-LABELED LARG REMARK 210 PDZ DOMAIN, 5MM EDTA, 1MM DTT, REMARK 210 7.6MM SYNTHETIC PEPTIDE, 50MM REMARK 210 PHOSPHATE BUFFER, 90% H2O, 10% REMARK 210 D2O; 0.8MM 15N, 13C-LABELED REMARK 210 LARG PDZ DOMAIN, 5MM EDTA, 1MM REMARK 210 DTT, 7.6MM SYNTHETIC PEPTIDE, REMARK 210 50MM PHOSPHATE BUFFER, 99.9% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 2D, 13C, REMARK 210 15N-FILTERED, 13C-EDITED REMARK 210 NOESY, DQF-COSY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS CNS 1.1, NMRPIPE NMRPIPE REMARK 210 2.2, SPARKY 3 SPARKY 3, MOLMOL REMARK 210 2K.2 MOLMOL 2K.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 94.56 67.41 REMARK 500 1 ASN A 28 -92.33 30.46 REMARK 500 1 VAL A 60 30.24 -91.26 REMARK 500 1 HIS A 62 -50.07 -154.74 REMARK 500 1 GLU B 91 111.17 -161.05 REMARK 500 1 LYS B 93 42.18 -150.77 REMARK 500 2 HIS A 3 24.70 -141.38 REMARK 500 2 MET A 4 31.88 -158.99 REMARK 500 2 LEU A 6 74.63 -156.62 REMARK 500 2 ASP A 16 -166.89 -128.92 REMARK 500 2 ASP A 27 -94.66 -132.09 REMARK 500 2 GLN A 33 -79.11 -83.40 REMARK 500 2 LYS A 36 92.47 -59.73 REMARK 500 2 VAL A 60 35.45 -92.98 REMARK 500 2 GLU B 91 163.48 71.66 REMARK 500 3 ASN A 28 -91.08 30.30 REMARK 500 3 VAL A 60 37.45 -93.12 REMARK 500 3 HIS A 62 63.98 -175.81 REMARK 500 3 ASN B 92 38.26 -141.07 REMARK 500 4 HIS A 3 -61.68 -175.33 REMARK 500 4 MET A 4 160.17 66.25 REMARK 500 4 ASP A 27 -84.18 -127.12 REMARK 500 4 GLN A 33 -75.03 -80.17 REMARK 500 5 MET A 4 -177.58 66.28 REMARK 500 5 ASP A 27 -79.54 -133.38 REMARK 500 5 SER A 34 131.11 179.99 REMARK 500 5 VAL A 60 30.75 -94.10 REMARK 500 5 ARG A 85 -61.45 -176.21 REMARK 500 5 LYS B 93 50.28 -157.33 REMARK 500 6 SER A 2 -75.69 69.29 REMARK 500 6 HIS A 3 174.09 62.42 REMARK 500 6 MET A 4 177.77 62.79 REMARK 500 6 LEU A 6 100.76 63.15 REMARK 500 6 ASN A 28 -86.78 21.87 REMARK 500 6 VAL A 30 153.10 -49.82 REMARK 500 6 GLN A 33 -64.79 -91.54 REMARK 500 6 ARG A 51 82.90 -69.89 REMARK 500 6 GLU B 91 -161.80 -67.94 REMARK 500 7 LEU A 6 -179.87 59.76 REMARK 500 7 ASP A 27 -84.76 -128.37 REMARK 500 7 HIS A 62 52.49 -171.74 REMARK 500 7 GLU B 91 86.59 62.68 REMARK 500 7 LYS B 93 48.48 -146.01 REMARK 500 8 HIS A 3 123.84 -173.32 REMARK 500 8 ASP A 27 -79.53 -133.15 REMARK 500 8 ASP A 38 51.67 -119.50 REMARK 500 8 ASN B 92 169.82 67.82 REMARK 500 9 SER A 2 42.58 -147.61 REMARK 500 9 LEU A 6 156.85 66.59 REMARK 500 9 ASP A 27 -82.65 -124.60 REMARK 500 9 GLN A 33 -75.09 -95.88 REMARK 500 9 HIS A 62 -43.03 -163.81 REMARK 500 10 ASP A 27 -82.53 -130.73 REMARK 500 10 ARG A 85 125.20 67.04 REMARK 500 10 LYS B 93 47.35 -104.19 REMARK 500 11 LEU A 6 105.43 61.37 REMARK 500 11 ASP A 27 -85.16 -133.76 REMARK 500 11 GLN A 33 -77.64 -88.72 REMARK 500 11 LYS A 36 108.54 -57.90 REMARK 500 11 ASN B 92 107.39 66.33 REMARK 500 12 HIS A 3 -66.49 -147.47 REMARK 500 12 MET A 4 153.66 67.44 REMARK 500 12 ASP A 27 -84.18 -142.74 REMARK 500 12 VAL A 60 37.74 -97.91 REMARK 500 12 HIS A 62 -48.26 -141.35 REMARK 500 12 SER A 76 -74.14 -74.37 REMARK 500 12 PRO A 87 104.89 -53.84 REMARK 500 13 ASN A 28 -95.06 35.55 REMARK 500 13 PRO A 86 106.77 -49.87 REMARK 500 13 PRO A 87 77.33 -68.42 REMARK 500 13 GLU B 91 72.04 57.78 REMARK 500 13 ASN B 92 -52.21 -157.94 REMARK 500 14 SER A 2 -75.56 -106.37 REMARK 500 14 MET A 4 91.73 -177.57 REMARK 500 14 ASP A 27 -92.30 -132.12 REMARK 500 14 VAL A 60 35.51 -97.43 REMARK 500 14 PRO A 86 109.76 -58.34 REMARK 500 14 LYS B 93 94.54 -165.65 REMARK 500 15 HIS A 3 41.19 -160.93 REMARK 500 15 ASP A 27 -89.31 -149.73 REMARK 500 15 GLN A 33 -71.70 -98.40 REMARK 500 15 HIS A 62 31.50 -144.59 REMARK 500 15 PRO A 87 -172.17 -62.25 REMARK 500 15 GLU B 91 128.08 -170.58 REMARK 500 16 MET A 4 146.00 74.22 REMARK 500 16 ASP A 27 -79.03 -122.99 REMARK 500 16 VAL A 60 32.54 -94.95 REMARK 500 16 SER A 76 -71.54 -91.05 REMARK 500 17 SER A 2 78.19 56.92 REMARK 500 17 HIS A 3 76.79 56.48 REMARK 500 17 ASP A 27 -82.73 -136.77 REMARK 500 17 LYS A 36 95.65 -67.03 REMARK 500 17 VAL A 60 35.51 -93.94 REMARK 500 17 LYS B 93 45.17 -150.89 REMARK 500 18 SER A 2 74.55 56.65 REMARK 500 18 ASN A 28 -93.36 33.80 REMARK 500 18 GLN A 33 -72.11 -79.51 REMARK 500 18 ASP A 38 41.29 -103.91 REMARK 500 18 THR A 58 97.26 -67.64 REMARK 500 18 VAL A 60 35.72 -98.17 REMARK 500 18 HIS A 62 44.69 -171.49 REMARK 500 18 PRO A 87 -177.13 -61.86 REMARK 500 19 ASP A 27 -95.98 -137.75 REMARK 500 19 ARG A 51 79.16 -116.07 REMARK 500 19 VAL A 60 34.08 -94.18 REMARK 500 19 LYS B 93 79.82 -115.38 REMARK 500 20 HIS A 3 -175.29 -69.72 REMARK 500 20 ASP A 27 -166.51 -106.02 REMARK 500 20 ASN A 28 -85.58 21.27 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OMJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH C-TERMINAL PEPTIDE OF REMARK 900 PLEXIN B1
DBREF 2OS6 A 5 89 UNP Q9NZN5 ARHGC_HUMAN 67 151 DBREF 2OS6 B 90 97 UNP O43157 PLXB1_HUMAN 2128 2135
SEQADV 2OS6 GLY A 1 UNP Q9NZN5 EXPRESSION TAG SEQADV 2OS6 SER A 2 UNP Q9NZN5 EXPRESSION TAG SEQADV 2OS6 HIS A 3 UNP Q9NZN5 EXPRESSION TAG SEQADV 2OS6 MET A 4 UNP Q9NZN5 EXPRESSION TAG
SEQRES 1 A 89 GLY SER HIS MET GLY LEU VAL GLN ARG CYS VAL ILE ILE SEQRES 2 A 89 GLN LYS ASP ASP ASN GLY PHE GLY LEU THR VAL SER GLY SEQRES 3 A 89 ASP ASN PRO VAL PHE VAL GLN SER VAL LYS GLU ASP GLY SEQRES 4 A 89 ALA ALA MET ARG ALA GLY VAL GLN THR GLY ASP ARG ILE SEQRES 5 A 89 ILE LYS VAL ASN GLY THR LEU VAL THR HIS SER ASN HIS SEQRES 6 A 89 LEU GLU VAL VAL LYS LEU ILE LYS SER GLY SER TYR VAL SEQRES 7 A 89 ALA LEU THR VAL GLN GLY ARG PRO PRO GLY SER SEQRES 1 B 8 VAL GLU ASN LYS VAL THR ASP LEU
HELIX 1 1 GLY A 39 ALA A 44 1 6 HELIX 2 2 ASN A 64 SER A 74 1 11
SHEET 1 A 4 VAL A 7 ILE A 13 0 SHEET 2 A 4 VAL A 78 GLY A 84 -1 O VAL A 82 N ARG A 9 SHEET 3 A 4 ARG A 51 VAL A 55 -1 N LYS A 54 O THR A 81 SHEET 4 A 4 THR A 58 LEU A 59 -1 O THR A 58 N VAL A 55 SHEET 1 B 3 PHE A 31 VAL A 35 0 SHEET 2 B 3 LEU A 22 SER A 25 -1 N THR A 23 O SER A 34 SHEET 3 B 3 VAL B 94 ASP B 96 -1 O THR B 95 N VAL A 24
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000