10 20 30 40 50 60 70 80 2OPV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 30-JAN-07 2OPV
TITLE SOLUTION NMR STRUCTURE OF THE SECOND DOMAIN OF KSRP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: KHSRP PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KH1 DOMAIN OF K-HOMOLOGY SPLICING RECOGNITION COMPND 5 PROTEIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KHSRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-JDK
KEYWDS KH DOMAIN, RNA BINDING PROTEIN, KSRP
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR I.DIAZ-MORENO,A.RAMOS,M.F.GARCIA-MAYORAL,D.HOLLINGWORTH
REVDAT 2 24-FEB-09 2OPV 1 VERSN REVDAT 1 26-FEB-08 2OPV 0
JRNL AUTH I.DIAZ-MORENO,D.HOLLINGWORTH,M.F.GARCIA-MAYORAL, JRNL AUTH 2 A.RAMOS JRNL TITL THE NMR STRUCTURES OF THE N-TERMINAL DOMAINS OF JRNL TITL 2 KSRP JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 2224 RESTRAINTS, 2149 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 52 DIHEDRAL ANGLE RESTRAINTS, 23 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS.
REMARK 4 REMARK 4 2OPV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB041439.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM KH2 U-15N,13C; 10MM TRIS- REMARK 210 HCL PH 7.4; 100MM NACL; 1MM REMARK 210 TCEP; 90% H2O, 10% D2O; 1MM REMARK 210 KH2 U-15N; 10MM TRIS-HCL PH REMARK 210 7.4; 100MM NACL; 1MM TCEP; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_HNCACB, 3D_HNCO, 3D_13C- REMARK 210 NOESY-HSQC, 3D_15N-NOESY-HSQC, REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 1.1, NMRPIPE 2.5, XEASY REMARK 210 2.0, SPARKY 3.11, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 10 -73.08 -141.35 REMARK 500 1 ALA A 11 53.84 -119.17 REMARK 500 1 SER A 58 -172.59 65.37 REMARK 500 1 GLN A 59 -62.29 71.76 REMARK 500 1 VAL A 63 -153.35 -131.83 REMARK 500 2 GLN A 6 87.75 59.67 REMARK 500 2 HIS A 8 145.67 74.06 REMARK 500 2 ASN A 10 101.32 -162.90 REMARK 500 2 ALA A 11 123.60 72.17 REMARK 500 2 ASN A 16 -71.14 -114.23 REMARK 500 2 VAL A 63 -159.01 -136.03 REMARK 500 3 HIS A 8 35.82 -154.66 REMARK 500 3 ASP A 9 -65.75 66.19 REMARK 500 3 ALA A 11 135.95 69.13 REMARK 500 3 SER A 58 -158.59 51.47 REMARK 500 3 GLN A 59 -82.69 65.28 REMARK 500 3 VAL A 63 -154.95 -93.11 REMARK 500 4 ASN A 10 -72.94 -84.96 REMARK 500 4 ASN A 16 -2.43 59.20 REMARK 500 4 SER A 58 -169.77 64.37 REMARK 500 4 GLN A 59 -79.23 67.76 REMARK 500 4 VAL A 63 -60.79 -126.51 REMARK 500 4 ASP A 64 -163.68 -120.63 REMARK 500 5 HIS A 8 77.51 70.25 REMARK 500 5 ASP A 9 -57.94 72.63 REMARK 500 5 ASN A 16 -80.52 -118.96 REMARK 500 5 LYS A 35 39.33 -92.29 REMARK 500 5 SER A 58 -127.28 62.10 REMARK 500 5 GLN A 59 -57.05 78.70 REMARK 500 5 ASN A 60 52.82 -100.03 REMARK 500 5 VAL A 63 -159.64 -108.86 REMARK 500 6 PHE A 7 -70.56 -64.71 REMARK 500 6 ASN A 10 -84.91 60.50 REMARK 500 6 ALA A 11 -51.32 -134.46 REMARK 500 6 SER A 58 -167.52 -72.74 REMARK 500 6 GLN A 59 -60.74 74.87 REMARK 500 6 VAL A 63 -157.58 -127.87 REMARK 500 7 HIS A 8 52.62 -162.53 REMARK 500 7 ASN A 12 75.64 -168.72 REMARK 500 7 LYS A 35 -56.81 73.10 REMARK 500 7 VAL A 63 -154.12 -133.65 REMARK 500 8 HIS A 8 16.82 -175.83 REMARK 500 8 ASP A 9 -96.16 64.37 REMARK 500 8 ALA A 11 55.29 -104.40 REMARK 500 8 VAL A 63 -153.11 -132.10 REMARK 500 9 ASN A 10 -62.18 68.87 REMARK 500 9 VAL A 63 -145.53 -132.61 REMARK 500 10 HIS A 8 115.76 71.25 REMARK 500 10 ALA A 11 -95.39 60.32 REMARK 500 10 ASN A 12 -34.10 164.86 REMARK 500 10 ASN A 16 -79.51 -79.69 REMARK 500 10 LYS A 35 -64.51 69.70 REMARK 500 10 GLN A 55 -36.70 -137.25 REMARK 500 10 VAL A 63 -163.65 -126.48 REMARK 500 11 GLN A 6 -85.69 61.16 REMARK 500 11 HIS A 8 -92.77 -173.12 REMARK 500 11 ASN A 10 -108.79 52.22 REMARK 500 11 LYS A 35 48.76 -81.60 REMARK 500 11 GLN A 59 -72.64 68.46 REMARK 500 11 VAL A 63 -156.93 -136.73 REMARK 500 12 PHE A 7 -143.04 -155.94 REMARK 500 12 HIS A 8 100.24 79.11 REMARK 500 12 ASP A 9 -53.47 179.08 REMARK 500 12 ASN A 10 -5.04 -150.21 REMARK 500 12 ASN A 60 30.02 -95.60 REMARK 500 12 VAL A 63 -139.27 -133.46 REMARK 500 13 ASP A 9 -102.67 36.68 REMARK 500 13 ASN A 16 -64.29 -101.12 REMARK 500 13 VAL A 63 -155.42 -121.01 REMARK 500 14 GLN A 6 -74.54 65.87 REMARK 500 14 HIS A 8 98.74 67.22 REMARK 500 14 ALA A 11 -68.39 -172.56 REMARK 500 14 SER A 58 -155.26 59.11 REMARK 500 14 GLN A 59 -62.20 72.89 REMARK 500 14 VAL A 63 -156.94 -132.72 REMARK 500 15 PHE A 7 8.30 -69.85 REMARK 500 15 ASP A 9 -164.22 -124.21 REMARK 500 15 ASN A 16 42.02 -144.91 REMARK 500 15 VAL A 63 -144.62 -131.69 REMARK 500 16 GLN A 6 35.24 -81.64 REMARK 500 16 PHE A 7 152.87 67.57 REMARK 500 16 HIS A 8 -76.08 -157.51 REMARK 500 16 ASP A 9 128.02 174.12 REMARK 500 16 ASN A 10 -68.50 70.26 REMARK 500 16 ASN A 16 -68.77 67.81 REMARK 500 16 VAL A 63 -57.48 -138.44 REMARK 500 16 ASP A 64 -166.07 -128.92 REMARK 500 17 PHE A 7 -97.94 61.05 REMARK 500 17 HIS A 8 176.85 64.64 REMARK 500 17 ASN A 10 -77.13 179.39 REMARK 500 17 ALA A 11 99.88 -172.37 REMARK 500 17 ASN A 16 -176.29 65.32 REMARK 500 17 SER A 58 27.83 -149.92 REMARK 500 17 ASN A 60 35.21 -142.88 REMARK 500 17 VAL A 63 -146.56 -125.28 REMARK 500 18 PHE A 7 -119.87 55.63 REMARK 500 18 HIS A 8 138.94 76.24 REMARK 500 18 ALA A 11 105.63 71.48 REMARK 500 18 VAL A 63 -151.72 -121.59 REMARK 500 19 GLN A 6 77.49 61.26 REMARK 500 19 HIS A 8 -165.69 67.54 REMARK 500 19 ASN A 10 -50.69 -143.28 REMARK 500 19 SER A 58 -139.35 58.22 REMARK 500 19 GLN A 59 -72.27 70.57 REMARK 500 19 ASN A 60 42.01 -102.86 REMARK 500 19 VAL A 63 -160.32 -111.80 REMARK 500 20 HIS A 8 -74.91 70.78 REMARK 500 20 ASP A 9 -55.29 -158.87 REMARK 500 20 ASN A 10 -65.19 -131.39 REMARK 500 20 ASP A 56 -50.59 -124.09 REMARK 500 20 SER A 58 -36.44 -170.29 REMARK 500 20 GLN A 59 -11.58 73.20 REMARK 500 20 VAL A 63 -64.14 -105.71 REMARK 500 21 PHE A 7 -78.27 71.97 REMARK 500 21 HIS A 8 76.50 60.94 REMARK 500 21 ALA A 11 86.48 59.14 REMARK 500 21 SER A 58 -154.46 57.32 REMARK 500 21 GLN A 59 -77.79 68.56 REMARK 500 21 VAL A 63 -126.14 -113.96 REMARK 500 21 PRO A 66 104.56 -58.09 REMARK 500 22 PHE A 7 -86.12 63.95 REMARK 500 22 HIS A 8 62.80 -110.61 REMARK 500 22 ASP A 9 -74.29 65.47 REMARK 500 22 ASN A 10 -50.07 -123.41 REMARK 500 22 ASN A 12 -64.30 -92.05 REMARK 500 22 ASN A 16 -70.70 -91.55 REMARK 500 22 ASP A 56 11.17 -146.42 REMARK 500 22 VAL A 63 -147.85 -137.77 REMARK 500 23 PHE A 7 105.43 83.41 REMARK 500 23 HIS A 8 -85.91 58.73 REMARK 500 23 ASN A 10 -53.08 73.94 REMARK 500 24 GLN A 6 42.34 -94.91 REMARK 500 24 PHE A 7 25.76 -74.28 REMARK 500 24 HIS A 8 36.09 -171.89 REMARK 500 24 ASN A 10 -58.71 70.51 REMARK 500 24 ALA A 11 -157.09 -98.15 REMARK 500 24 ASN A 12 -168.44 68.89 REMARK 500 24 VAL A 63 -156.72 -135.39 REMARK 500 25 HIS A 8 31.26 -160.07 REMARK 500 25 ALA A 11 71.66 51.51 REMARK 500 25 SER A 58 -171.89 62.91 REMARK 500 25 VAL A 63 -155.54 -133.72 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HH3 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE THIRD KH DOMAIN OF KSRP REMARK 900 RELATED ID: 2HH2 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE FOURTH KH DOMAIN OF KSRP
DBREF 2OPV A 5 89 UNP Q5U4P6 Q5U4P6_HUMAN 221 305
SEQRES 1 A 85 GLY GLN PHE HIS ASP ASN ALA ASN GLY GLY GLN ASN GLY SEQRES 2 A 85 THR VAL GLN GLU ILE MET ILE PRO ALA GLY LYS ALA GLY SEQRES 3 A 85 LEU VAL ILE GLY LYS GLY GLY GLU THR ILE LYS GLN LEU SEQRES 4 A 85 GLN GLU ARG ALA GLY VAL LYS MET ILE LEU ILE GLN ASP SEQRES 5 A 85 GLY SER GLN ASN THR ASN VAL ASP LYS PRO LEU ARG ILE SEQRES 6 A 85 ILE GLY ASP PRO TYR LYS VAL GLN GLN ALA CYS GLU MET SEQRES 7 A 85 VAL MET ASP ILE LEU ARG GLU
HELIX 1 1 LYS A 28 GLY A 34 1 7 HELIX 2 2 GLY A 37 GLY A 48 1 12 HELIX 3 3 ASP A 72 ARG A 88 1 17
SHEET 1 A 3 THR A 18 ILE A 24 0 SHEET 2 A 3 LYS A 65 GLY A 71 -1 O LEU A 67 N ILE A 22 SHEET 3 A 3 LYS A 50 LEU A 53 -1 N LYS A 50 O ILE A 70
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000