10 20 30 40 50 60 70 80 2OPU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 30-JAN-07 2OPU
TITLE SOLUTION NMR STRUCTURE OF THE FIRST DOMAIN OF KSRP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: KHSRP PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KH DOMAIN; COMPND 5 SYNONYM: KH1 DOMAIN OF K-HOMOLOGY SPLICING RECOGNITION COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KHSRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-JDK
KEYWDS KH DOMAIN, RNA BINDING PROTEIN, KSRP
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR I.DIAZ-MORENO,A.RAMOS,M.F.GARCIA-MAYORAL,D.HOLLINGWORTH
REVDAT 3 17-MAR-09 2OPU 1 JRNL REVDAT 2 10-FEB-09 2OPU 1 JRNL VERSN REVDAT 1 26-FEB-08 2OPU 0
JRNL AUTH I.DIAZ-MORENO,D.HOLLINGWORTH,T.A.FRENKIEL,G.KELLY, JRNL AUTH 2 S.MARTIN,S.HOWELL,M.GARCIA-MAYORAL,R.GHERZI, JRNL AUTH 3 P.BRIATA,A.RAMOS JRNL TITL PHOSPHORYLATION-MEDIATED UNFOLDING OF A KH DOMAIN JRNL TITL 2 REGULATES KSRP LOCALIZATION VIA 14-3-3 BINDING. JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 238 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19198587 JRNL DOI 10.1038/NSMB.1558
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1908 RESTRAINTS, 1822 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 57 DIHEDRAL ANGLE RESTRAINTS, 29 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS.
REMARK 4 REMARK 4 2OPU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB041438.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM KH1 U-15N,13C; 10MM TRIS- REMARK 210 HCL PH 7.4; 100MM NACL; 1MM REMARK 210 TCEP; 90% H2O, 10% D2O; 1MM REMARK 210 KH1 U-15N; 10MM TRIS-HCL PH REMARK 210 7.4; 100MM NACL; 1MM TCEP; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_HNCACB, 3D_HNCO, 3D_13C- REMARK 210 NOESY-HSQC, 3D_15N-NOESY-HSQC, REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 1.1, NMRPIPE 2.5, XEASY REMARK 210 2.0, SPARKY 3.11, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 7 -35.66 72.90 REMARK 500 1 GLN A 8 -68.20 67.58 REMARK 500 1 LEU A 9 -87.83 70.89 REMARK 500 1 PRO A 14 163.08 -36.21 REMARK 500 1 PRO A 15 161.78 -42.61 REMARK 500 1 PRO A 16 3.62 -60.37 REMARK 500 1 THR A 18 -19.81 -151.11 REMARK 500 1 SER A 59 -74.47 70.45 REMARK 500 2 SER A 7 -69.71 74.11 REMARK 500 2 GLN A 8 106.35 -161.42 REMARK 500 2 PRO A 14 159.01 -39.15 REMARK 500 2 PRO A 15 144.38 -38.16 REMARK 500 2 PRO A 16 31.32 -66.77 REMARK 500 2 THR A 18 -17.76 -179.46 REMARK 500 2 SER A 19 -80.92 -78.32 REMARK 500 2 ARG A 37 44.90 -76.99 REMARK 500 2 SER A 59 -54.09 71.41 REMARK 500 2 GLU A 64 -141.05 -111.03 REMARK 500 3 GLN A 8 -162.30 53.78 REMARK 500 3 LEU A 9 -69.14 173.05 REMARK 500 3 PRO A 14 -176.62 -46.10 REMARK 500 3 PRO A 15 158.70 -42.14 REMARK 500 3 PRO A 16 17.07 -64.40 REMARK 500 3 THR A 18 -25.96 -158.71 REMARK 500 3 MET A 20 32.67 -145.58 REMARK 500 3 SER A 59 -67.53 73.19 REMARK 500 4 SER A 7 -80.90 -173.31 REMARK 500 4 PRO A 14 162.55 -38.81 REMARK 500 4 PRO A 16 7.56 -65.99 REMARK 500 4 THR A 18 7.14 -159.29 REMARK 500 4 SER A 19 -104.64 -93.28 REMARK 500 4 MET A 20 74.22 -63.95 REMARK 500 4 ARG A 37 48.68 -72.99 REMARK 500 4 SER A 59 -69.11 70.72 REMARK 500 4 GLU A 64 -104.06 -110.64 REMARK 500 4 ARG A 91 -77.94 -92.22 REMARK 500 5 PRO A 14 -166.89 -61.06 REMARK 500 5 PRO A 16 33.63 -67.10 REMARK 500 5 THR A 18 -15.25 174.53 REMARK 500 5 MET A 20 58.14 -159.42 REMARK 500 5 ARG A 91 -50.64 -160.44 REMARK 500 6 SER A 7 -163.63 70.53 REMARK 500 6 PRO A 16 26.83 -65.53 REMARK 500 6 THR A 18 34.05 -168.62 REMARK 500 6 SER A 19 -80.66 -126.12 REMARK 500 6 SER A 59 -77.32 65.39 REMARK 500 6 GLU A 64 -147.54 -104.27 REMARK 500 7 SER A 7 -153.27 62.91 REMARK 500 7 GLN A 8 -31.63 170.83 REMARK 500 7 LEU A 9 -90.77 67.55 REMARK 500 7 PRO A 14 144.64 -32.58 REMARK 500 7 PRO A 16 60.43 -51.79 REMARK 500 7 THR A 18 -25.19 -178.87 REMARK 500 7 MET A 20 31.10 -147.38 REMARK 500 7 ARG A 37 28.15 -77.06 REMARK 500 7 GLU A 64 -154.26 -91.69 REMARK 500 8 SER A 6 -145.29 65.74 REMARK 500 8 PRO A 14 154.24 -40.58 REMARK 500 8 PRO A 15 152.99 -46.58 REMARK 500 8 PRO A 16 24.85 -65.51 REMARK 500 8 THR A 18 10.81 -163.25 REMARK 500 8 SER A 19 -86.31 -105.22 REMARK 500 8 MET A 20 85.87 -69.13 REMARK 500 8 SER A 59 -78.98 55.05 REMARK 500 9 SER A 7 -162.58 62.98 REMARK 500 9 PRO A 14 167.90 -41.27 REMARK 500 9 PRO A 15 156.45 -42.30 REMARK 500 9 PRO A 16 28.12 -65.48 REMARK 500 9 THR A 18 8.18 -163.88 REMARK 500 9 SER A 19 -94.06 -92.90 REMARK 500 9 ARG A 37 42.75 -77.26 REMARK 500 9 SER A 59 -85.89 49.93 REMARK 500 9 GLU A 64 -164.75 -105.27 REMARK 500 10 SER A 6 135.64 71.56 REMARK 500 10 SER A 7 -61.22 70.75 REMARK 500 10 GLN A 8 -161.80 57.78 REMARK 500 10 LEU A 9 -72.27 171.66 REMARK 500 10 PRO A 14 130.34 -31.45 REMARK 500 10 PRO A 15 127.08 -33.89 REMARK 500 10 PRO A 16 53.26 -19.62 REMARK 500 10 THR A 18 -13.61 -178.62 REMARK 500 10 MET A 20 52.69 -117.68 REMARK 500 10 ARG A 37 38.93 -77.70 REMARK 500 10 ARG A 91 36.25 -91.58 REMARK 500 11 SER A 7 -73.16 73.62 REMARK 500 11 PRO A 14 168.52 -39.37 REMARK 500 11 PRO A 15 153.65 -42.56 REMARK 500 11 PRO A 16 27.95 -69.51 REMARK 500 11 THR A 18 18.51 -160.92 REMARK 500 11 SER A 19 -98.85 -99.50 REMARK 500 11 MET A 20 88.77 -64.83 REMARK 500 11 SER A 59 -83.08 53.64 REMARK 500 11 GLU A 64 -162.01 -104.09 REMARK 500 11 ARG A 91 -51.54 -162.37 REMARK 500 12 SER A 6 137.91 61.51 REMARK 500 12 PRO A 14 164.21 -35.90 REMARK 500 12 PRO A 16 3.91 -63.79 REMARK 500 12 SER A 19 -96.52 -84.52 REMARK 500 12 MET A 20 80.05 -68.09 REMARK 500 12 GLU A 64 -155.62 -99.34 REMARK 500 13 SER A 7 -147.24 68.39 REMARK 500 13 GLN A 8 -143.41 -175.40 REMARK 500 13 LEU A 9 -61.15 -167.09 REMARK 500 13 PRO A 14 -162.56 -57.99 REMARK 500 13 PRO A 15 155.83 -38.59 REMARK 500 13 PRO A 16 23.68 -64.68 REMARK 500 13 THR A 18 2.27 -179.13 REMARK 500 13 MET A 20 52.90 -146.43 REMARK 500 13 ARG A 37 37.89 -77.50 REMARK 500 13 SER A 59 -65.52 71.02 REMARK 500 14 SER A 7 -166.45 68.78 REMARK 500 14 PRO A 14 161.53 -39.27 REMARK 500 14 PRO A 16 31.05 -70.35 REMARK 500 14 THR A 18 1.37 -174.33 REMARK 500 14 SER A 19 -85.09 -93.74 REMARK 500 14 GLU A 64 -110.57 -108.45 REMARK 500 15 SER A 6 178.38 67.54 REMARK 500 15 SER A 7 -69.15 68.49 REMARK 500 15 GLN A 8 -156.47 48.51 REMARK 500 15 LEU A 9 -41.92 174.33 REMARK 500 15 PRO A 14 164.07 -38.05 REMARK 500 15 PRO A 15 146.04 -26.98 REMARK 500 15 PRO A 16 12.90 -65.96 REMARK 500 15 THR A 18 -25.21 -159.83 REMARK 500 15 MET A 20 37.40 -144.52 REMARK 500 15 ARG A 91 -56.45 -156.19 REMARK 500 16 SER A 7 -163.46 68.51 REMARK 500 16 GLN A 8 -36.93 -162.53 REMARK 500 16 LEU A 9 -126.96 70.16 REMARK 500 16 PRO A 14 127.84 -35.01 REMARK 500 16 PRO A 15 132.40 -36.97 REMARK 500 16 PRO A 16 62.13 -25.23 REMARK 500 16 THR A 18 -8.07 174.11 REMARK 500 16 MET A 20 70.17 -155.26 REMARK 500 17 SER A 6 -160.35 -115.94 REMARK 500 17 SER A 7 -170.96 68.21 REMARK 500 17 PRO A 14 165.76 -37.69 REMARK 500 17 PRO A 16 21.91 -64.29 REMARK 500 17 THR A 18 6.58 -164.50 REMARK 500 17 SER A 19 -99.17 -92.36 REMARK 500 17 MET A 20 84.37 -60.98 REMARK 500 17 ARG A 37 37.11 -75.07 REMARK 500 17 SER A 59 -154.40 62.33 REMARK 500 17 GLU A 64 -115.24 -111.11 REMARK 500 18 SER A 7 -169.78 70.57 REMARK 500 18 GLN A 8 117.37 -36.42 REMARK 500 18 PRO A 14 171.26 -41.79 REMARK 500 18 PRO A 15 150.20 -33.99 REMARK 500 18 PRO A 16 27.25 -66.26 REMARK 500 18 THR A 18 12.33 -164.45 REMARK 500 18 SER A 19 -99.43 -92.86 REMARK 500 18 MET A 20 78.07 -68.71 REMARK 500 18 SER A 59 -64.94 73.78 REMARK 500 18 ARG A 91 39.26 -89.41 REMARK 500 19 SER A 7 -161.41 62.26 REMARK 500 19 GLN A 8 -93.13 -147.92 REMARK 500 19 LEU A 9 -173.40 172.97 REMARK 500 19 PRO A 14 167.25 -39.50 REMARK 500 19 PRO A 15 165.61 -49.29 REMARK 500 19 PRO A 16 34.71 -63.75 REMARK 500 19 THR A 18 -12.77 -178.92 REMARK 500 19 MET A 20 72.73 -164.26 REMARK 500 19 ARG A 37 48.39 -76.69 REMARK 500 19 LYS A 52 71.58 -105.58 REMARK 500 19 SER A 59 -59.64 70.03 REMARK 500 19 GLU A 64 -84.16 -88.44 REMARK 500 20 SER A 6 -162.37 56.09 REMARK 500 20 SER A 7 -168.66 62.37 REMARK 500 20 PRO A 14 166.52 -37.12 REMARK 500 20 PRO A 15 153.92 -45.13 REMARK 500 20 PRO A 16 12.92 -64.54 REMARK 500 20 THR A 18 -5.62 -154.10 REMARK 500 20 SER A 19 -90.94 -79.79 REMARK 500 20 LYS A 52 76.25 -101.30 REMARK 500 20 SER A 59 -68.33 68.65 REMARK 500 21 SER A 6 92.70 67.90 REMARK 500 21 SER A 7 -152.20 63.19 REMARK 500 21 GLN A 8 -103.45 -178.77 REMARK 500 21 LEU A 9 -85.82 158.83 REMARK 500 21 PRO A 14 -175.50 -56.40 REMARK 500 21 PRO A 15 153.70 -44.22 REMARK 500 21 PRO A 16 33.81 -65.46 REMARK 500 21 THR A 18 -16.32 -176.02 REMARK 500 21 MET A 20 31.23 -146.47 REMARK 500 21 ARG A 37 20.84 -77.34 REMARK 500 21 GLU A 64 -153.27 -119.52 REMARK 500 22 SER A 7 -69.67 73.42 REMARK 500 22 PRO A 14 168.59 -42.23 REMARK 500 22 PRO A 15 157.21 -41.25 REMARK 500 22 PRO A 16 28.60 -66.83 REMARK 500 22 THR A 18 10.16 -158.36 REMARK 500 22 GLU A 64 -86.07 -83.41 REMARK 500 22 ARG A 91 100.95 -164.03 REMARK 500 23 SER A 7 -68.61 75.19 REMARK 500 23 PRO A 14 178.99 -56.34 REMARK 500 23 PRO A 15 153.01 -40.18 REMARK 500 23 PRO A 16 34.88 -71.04 REMARK 500 23 THR A 18 23.24 -164.56 REMARK 500 23 SER A 19 -90.11 -101.16 REMARK 500 23 SER A 59 -85.14 47.58 REMARK 500 23 GLU A 64 -102.47 -110.86 REMARK 500 23 ARG A 91 -48.17 -157.40 REMARK 500 24 SER A 7 -4.27 74.03 REMARK 500 24 PRO A 14 171.77 -39.94 REMARK 500 24 PRO A 15 156.60 -49.02 REMARK 500 24 PRO A 16 11.36 -65.21 REMARK 500 24 THR A 18 -11.01 -157.75 REMARK 500 24 SER A 19 -83.65 -79.86 REMARK 500 24 GLU A 64 -94.75 -101.16 REMARK 500 25 SER A 7 -155.26 64.47 REMARK 500 25 HIS A 13 31.42 -96.26 REMARK 500 25 PRO A 14 -163.97 -57.85 REMARK 500 25 PRO A 16 33.69 -67.76 REMARK 500 25 THR A 18 -16.58 171.47 REMARK 500 25 MET A 20 69.75 -150.56 REMARK 500 25 ARG A 37 -32.17 -174.75 REMARK 500 25 SER A 59 -80.48 68.94 REMARK 500 25 GLU A 64 -154.21 -126.70 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HH3 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE THIRD KH DOMAIN OF KSRP REMARK 900 RELATED ID: 2HH2 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE FOURTH KH DOMAIN OF KSRP
DBREF 2OPU A 5 93 UNP Q5U4P6 Q5U4P6_HUMAN 130 218
SEQRES 1 A 89 ILE SER SER GLN LEU GLY PRO ILE HIS PRO PRO PRO ARG SEQRES 2 A 89 THR SER MET THR GLU GLU TYR ARG VAL PRO ASP GLY MET SEQRES 3 A 89 VAL GLY LEU ILE ILE GLY ARG GLY GLY GLU GLN ILE ASN SEQRES 4 A 89 LYS ILE GLN GLN ASP SER GLY CYS LYS VAL GLN ILE SER SEQRES 5 A 89 PRO ASP SER GLY GLY LEU PRO GLU ARG SER VAL SER LEU SEQRES 6 A 89 THR GLY ALA PRO GLU SER VAL GLN LYS ALA LYS MET MET SEQRES 7 A 89 LEU ASP ASP ILE VAL SER ARG GLY ARG GLY GLY
HELIX 1 1 PRO A 15 MET A 20 1 6 HELIX 2 2 PRO A 27 ILE A 35 1 9 HELIX 3 3 GLY A 39 GLY A 50 1 12 HELIX 4 4 ALA A 72 GLY A 92 1 21
SHEET 1 A 4 SER A 7 LEU A 9 0 SHEET 2 A 4 THR A 21 VAL A 26 -1 N THR A 21 O LEU A 9 SHEET 3 A 4 ARG A 65 LEU A 69 -1 O VAL A 67 N TYR A 24 SHEET 4 A 4 GLN A 54 SER A 56 -1 N GLN A 54 O SER A 68
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000